Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11953
- Subject:
- XR_001748739.2
- Aligned Length:
- 2473
- Identities:
- 1600
- Gaps:
- 872
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGACAGAGCCCGCTCCTCCAGGCTGGTGGGGCGGTGCGATGAGGCGGCTTCTGGGCCATACGTCAGCACGTGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGGCGCCGCACCCCTGAGGATCCCGGTCCACGCGGAGGAGTGGGGCTTTTCACCGCCGCCGCCGCCGCCCTCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GACCTCTCCCGGGATACTTCACATTTCCCTAGGGACGGGAGCCCGAGGGGTCCGTTCGGCCCTCTTCCTCTCGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGGGCCGACACCCCGCTGTAGGACCGTAACCCTTAGTCCCAATGCCTCCGTAAGCGGAGTTGAGTGGGTGCCTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTTGGAGCTGTGGAGGTGTCCCCGGTGGCGAGCGCGGCCAGAACTGCGGTCACTTAAGTTTTCCGTGTGCGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTTGCAAGGAGCGTGCGTGCGTCTGGTATAGGGAGGACACCTCTGGATTGAGGATCTTATGACCTACTTTAGAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GAAGGTATAATTTGGCTTCCTGAGATTCTGCCTTAGCAAGAAAGGAGTGGGAAATACCCTTGGAAAGAAAACTA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAACAGTAAGAAAGCCAAAACTTATTTTTACATGGTTGTCAGCACATTTACCGATATGGACACTTTTCCCAATA 592
Query 1 --------------------------------------------------------ATGTTAATTGATGAAAGG 18
||||||||||||||||||
Sbjct 593 ATTTTCCTCCTGGTGGAGACAGTGGATTGACAGGTTCTCAGTCGGAGTTCCAGAAAATGTTAATTGATGAAAGG 666
Query 19 TTACGATGTGAGCATCATAAAGCTAATTATCAGACACTGAAGGCTGAACACACAAGGTTGCAGAATGAACATGT 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTACGATGTGAGCATCATAAAGCTAATTATCAGACACTGAAGGCTGAACACACAAGGTTGCAGAATGAACATGT 740
Query 93 AAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAACTTCAGCTCCTGCTTG 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAACTTCAGCTCCTGCTTG 814
Query 167 AAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCAGATATTAACTCCACAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCAGATATTAACTCCACAA 888
Query 241 AAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAACGTTTTAGGAATCTAGA 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAACGTTTTAGGAATCTAGA 962
Query 315 TGAAGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGAACATACATTTCTCAAGTCAGAATTTG 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGAAGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGAACATACATTTCTCAAGTCAGAATTTG 1036
Query 389 AACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAAAATATGAATCAGAGATTGCAAGACTG 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAAAATATGAATCAGAGATTGCAAGACTG 1110
Query 463 GAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAGACAGCAAACGAGTGGAACA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAGACAGCAAACGAGTGGAACA 1184
Query 537 ACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAGTAGCGGAATTAAAGGCTG 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAGTAGCGGAATTAAAGGCTG 1258
Query 611 AAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCAGTTGGCTGAGATGCAGGCT 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCAGTTGGCTGAGATGCAGGCT 1332
Query 685 ACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCAGAACGCTTGGAAAAAGAGCTACAATC 758
|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 1333 ACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCAGAACGTTTGGAAAAAGAGCTACAATC 1406
Query 759 AAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGAACGAGAAATAAATACATTGTCCAGTA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGAACGAGAAATAAATACATTGTCCAGTA 1480
Query 833 AAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCAAACTGGAGACAGCAAGAGCTAAGAGT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCAAACTGGAGACAGCAAGAGCTAAGAGT 1554
Query 907 GAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGGATTACAGTCAGACAATGAAATTCTCAAAGC 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGGATTACAGTCAGACAATGAAATTCTCAAAGC 1628
Query 981 AGCTGTTGAACATCACAAAGTGCTCTTAGTAGAAAAGGATCGTGAATTAATACGTAAAGTACAAGCTGCCAAAG 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AGCTGTTGAACATCACAAAGTGCTCTTAGTAGAAAAGGATCGTGAATTAATACGTAAAGTACAAGCTGCCAAAG 1702
Query 1055 AAGAAGGTTATCAAAAACTTGTGGTATTACAAGATGAAAAGTTAGAACTCGAGAACAGATTAGCAGATTTGGAG 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AAGAAGGTTATCAAAAACTTGTGGTATTACAAGATGAAAAGTTAGAACTCGAGAACAGATTAGCAGATTTGGAG 1776
Query 1129 AAAATGAAAGTGGAACATGATGTCTGGAGGCAATCTGAAAAGGATCAGTATGAAGAGAAATTGCGGGCTTCACA 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AAAATGAAAGTGGAACATGATGTCTGGAGGCAATCTGAAAAGGATCAGTATGAAGAGAAATTGCGGGCTTCACA 1850
Query 1203 GATGGCAGAAGAGATCACCAGGAAGGAGCTTCAGAGTGT----------------------------------- 1241
|||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GATGGCAGAAGAGATCACCAGGAAGGAGCTTCAGAGTGTTAGGATGTTCTGTGATTCTCTTTCACTTTCCCTGC 1924
Query 1242 -------------------------------------------------------------------------- 1241
Sbjct 1925 CCCAGCCCTGGAATTAAACATTTATCTGAGGTGCTTTGATTCCTTTTTAATTGGAGAATGGCATTTAGAAACCA 1998
Query 1242 ------------TAGGTTAAAACTTCAGCAACAAATTGTGACTATTGAAAATGCAGAGAAGGAAAAAAATGAAA 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 AAATCTCAACTCTAGGTTAAAACTTCAGCAACAAATTGTGACTATTGAAAATGCAGAGAAGGAAAAAAATGAAA 2072
Query 1304 ATTCTGACCTAAAACAGCAAATCAGTAGTTTGCAGATCCAAGTGACTTCACTTGCACAGTCAGAGAATGACTTG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 ATTCTGACCTAAAACAGCAAATCAGTAGTTTGCAGATCCAAGTGACTTCACTTGCACAGTCAGAGAATGACTTG 2146
Query 1378 CTGAATTCAAACCAAATGCTGAAGGAAATGGTGGAGAGATTAAAACAAGAATGCCGAAATTTTAGAAGCCAAGC 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CTGAATTCAAACCAAATGCTGAAGGAAATGGTGGAGAGATTAAAACAAGAATGCCGAAATTTTAGAAGCCAAGC 2220
Query 1452 TGAAAAAGCGCAACTAGAAGCTGAAAAGACATTGGAAGAGAAACAGATACAGTGGTTGGAAGAAAAGCATAAGC 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 TGAAAAAGCGCAACTAGAAGCTGAAAAGACATTGGAAGAGAAACAGATACAGTGGTTGGAAGAAAAGCATAAGC 2294
Query 1526 TTCATGAGCGTATCACAGACAGAGAAGAAAAGTACAATCAAGCTAAGGAGAAACTGCAGCGAGCTGCAATTGCC 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 TTCATGAGCGTATCACAGACAGAGAAGAAAAGTACAATCAAGCTAAGGAGAAACTGCAGCGAGCTGCAATTGCC 2368
Query 1600 CAGAAAAAGCTTGAACAGGATCTTGAGTTGGGATGCCCTTCTGTGACTGATACATACAGAGAGAGTGTATTCCC 1673
||
Sbjct 2369 CA------------------------------------------------------------------------ 2370
Query 1674 CCCACCCCCATTGAAGAGAGATCTCTTGAAG 1704
Sbjct 2371 ------------------------------- 2370
