Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11964
- Subject:
- XR_001751299.2
- Aligned Length:
- 2549
- Identities:
- 1317
- Gaps:
- 1232
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAAGTTAAGAGTGGCGCCAGGGATTTGAACCGCGCTGACGAAGTTTGGTGATCCATCTTCCGAGTATCGCCGGG 74
Query 1 -------------ATGATCATCCCCTCTCTAGAGGAGCTGGACTCCCTCAAGTACAGTGACCTGCAGAACTTAG 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 ATTTCGAATCGCGATGATCATCCCCTCTCTAGAGGAGCTGGACTCCCTCAAGTACAGTGACCTGCAGAACTTAG 148
Query 62 CCAAGAGTCTGGGTCTCCGGGCCAACCTGAGGGCAACCAAGTTGTTAAAAGCCTTGAAAGGCTACATTAAACAT 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CCAAGAGTCTGGGTCTCCGGGCCAACCTGAGGGCAACCAAGTTGTTAAAAGCCTTGAAAGGCTACATTAAACAT 222
Query 136 GAGGCAAGAAAAGGAAATGAGAATCAGGATGAAAGTCAAACTTCTGCATCCTCTTGTGATGAGACTGAGATACA 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GAGGCAAGAAAAGGAAATGAGAATCAGGATGAAAGTCAAACTTCTGCATCCTCTTGTGATGAGACTGAGATACA 296
Query 210 GATCAGCAACCAGGAAGAAGCTGAGAGACAGCCACTTGGCCATGTCACCAAAACAAGGAGAAGGTGCAAGACTG 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GATCAGCAACCAGGAAGAAGCTGAGAGACAGCCACTTGGCCATGTCACCAAAACAAGGAGAAGGTGCAAGACTG 370
Query 284 TCCGTGTGGACCCTGACTCA---CAGAATCATTCAGAGATAAAAATAAGTAATCCCACTGAATTCCAGAATCAT 354
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCCGTGTGGACCCTGACTCACAGCAGAATCATTCAGAGATAAAAATAAGTAATCCCACTGAATTCCAGAATCAT 444
Query 355 GAAAAGCAGGAAAGCCAGGATCTCAGAGCTACTGCAAAAGTTCCTTCTCCACCAGACGAGCACCAAGAAGCTGA 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GAAAAGCAGGAAAGCCAGGATCTCAGAGCTACTGCAAAAGTTCCTTCTCCACCAGACGAGCACCAAGAAGCTGA 518
Query 429 GAATGCTGTTTCCTCAGGTAACAGAGATTCAAAGGTACCTTCAGAAGGAAAGAAATCTCTCTACACAGATGAGT 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GAATGCTGTTTCCTCAGGTAACAGAGATTCAAAGGTACCTTCAGAAGGAAAGAAATCTCTCTACACAGATGAGT 592
Query 503 CATCCAAACCTGGAAAAAATAAAAGAACTGCAATCACTACTCCAAACTTTAAGAAGCTTCATGAAGCTCATTTT 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CATCCAAACCTGGAAAAAATAAAAGAACTGCAATCACTACTCCAAACTTTAAGAAGCTTCATGAAGCTCATTTT 666
Query 577 AAGGAAATGGAGTCCATTGATCAATATATTGAGAGAAAAAAGAAACATTTTGAAGAACACAATTCCATGAATGA 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGGAAATGGAGTCCATTGATCAATATATTGAGAGAAAAAAGAAACATTTTGAAGAACACAATTCCATGAATGA 740
Query 651 ACTGA---AGCAGCCCATCAATAAGGGAGGGGTCAGGACTCCAGTACCTCCAAGAGGAAGACTCTCTGTGGCTT 721
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACTGAAGCAGCAGCCCATCAATAAGGGAGGGGTCAGGACTCCAGTACCTCCAAGAGGAAGACTCTCTGTGGCTT 814
Query 722 CTACTCCCATCAGCCAACGACGCTCGCAAGGCCGGTCTTGTGGCCCTGCAAGTCAGAGTACCTTGGGTCTGAAG 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTACTCCCATCAGCCAACGACGCTCGCAAGGCCGGTCTTGTGGCCCTGCAAGTCAGAGTACCTTGGGTCTGAAG 888
Query 796 GGGTCACTCAAGCGCTCTGCTATCTCTGCAGCTAAAACGGGTGT------------------------------ 839
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GGGTCACTCAAGCGCTCTGCTATCTCTGCAGCTAAAACGGGTGTCAGGTAAAGAAATCACTCCAAAATGTAATC 962
Query 840 -------------------------------------------------------------------------- 839
Sbjct 963 ATGAACAAGATTTCACATGGACTATATAAAAAAAAAATTTTTAATTGGCAAATAATATTCGTACATACTCATAG 1036
Query 840 -------------------------------------------------------------------------- 839
Sbjct 1037 GGTACATAGTGATGTTTCTTTTCTTTTCTTTTTCTTTTTTTTTTTTTTGAGATGAGGTCTCGCTCTGTCGCCCA 1110
Query 840 -------------------------------------------------------------------------- 839
Sbjct 1111 GGCTGGAGTGCAGTGGCGCAATCTCAGCTCCCTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTTCTGCCTCA 1184
Query 840 ----------------------CAGGTTTTCAGCTGCTACTAAAGATAATGAGCATAAGCGTTCACTGACCAAG 891
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GCCTCCCGAGTAGCTGGGACTACAGGTTTTCAGCTGCTACTAAAGATAATGAGCATAAGCGTTCACTGACCAAG 1258
Query 892 ACTCCAGCCAGAAAGTCTGCACATGTGACCGTGTCTGGGGGCACCCCAAAAGGCGAGGCTGTGCTTGGGACACA 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACTCCAGCCAGAAAGTCTGCACATGTGACCGTGTCTGGGGGCACCCCAAAAGGCGAGGCTGTGCTTGGGACACA 1332
Query 966 CAAATTAAAGACCATCACGGGGAATTCTGCTGCTGTTATTACCCCATTCAAGTTGACAACTGAGGCAACGCAGA 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CAAATTAAAGACCATCACGGGGAATTCTGCTGCTGTTATTACCCCATTCAAGTTGACAACTGAGGCAACGCAGA 1406
Query 1040 CTCCAGTCTCCAATAAGAAACCAGTGTTTGATCTTAAAGCAAGTTTGTCTCGTCCCCTCAACTATGAACCACAC 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CTCCAGTCTCCAATAAGAAACCAGTGTTTGATCTTAAAGCAAGTTTGTCTCGTCCCCTCAACTATGAACCACAC 1480
Query 1114 AAAGGAAAGCTAAAACCATGGGGGCAATCTAAAGAAAATAATTATCTAAATCAACATGTCAACAGAATTAACTT 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AAAGGAAAGCTAAAACCATGGGGGCAATCTAAAGAAAATAATTATCTAAATCAACATGTCAACAGAATTAACTT 1554
Query 1188 CTACAAGAAAACTTACAAACAACCCCATCTCCAGACAAAGGAAGAGCAACGGAAGAAACGCGAGCAAGAACGAA 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CTACAAGAAAACTTACAAACAACCCCATCTCCAGACAAAGGAAGAGCAACGGAAGAAACGCGAGCAAGAACGAA 1628
Query 1262 AGGAGAAGAAAGCAAAGGTTTTGGGAATGCGAAGGGGCCTCATTTTGGCTGAAGAT------------------ 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AGGAGAAGAAAGCAAAGGTTTTGGGAATGCGAAGGGGCCTCATTTTGGCTGAAGATTAATAATTTTTTAACATC 1702
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1703 TTGTAAATATTCCTGTATTCTCAACTTTTTTCCTTTTGTAAATTTTTTTTTTTTGCTGTCATCCCCACTTTAGT 1776
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1777 CACGAGATCTTTTTCTGCTAACTGTTCATAGTCTGTGTAGTGTCCATGGGTTCTTCATGTGCTATGATCTCTGA 1850
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1851 AAAGACGTTATCACCTTAAAGCTCAAATTCTTTGGGATGGTTTTTACTTAAGTCCATTAACAATTCAGGTTTCT 1924
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1925 AACGAGACCCATCCTAAAATTCTGTTTCTAGATTTTTAATGTCAAGTTCCCAAGTTCCCCCTGCTGGTTCTAAT 1998
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1999 ATTAACAGAACTGCAGTCTTCTGCTAGCCAATAGCATTTACCTGATGGCAGCTAGTTATGCAAGCTTCAGGAGA 2072
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2073 ATTTGAACAATAACAAGAATAGGGTAAGCTGGGATAGAAAGGCCACCTCTTCACTCTCTATAGAATATAGTAAC 2146
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2147 CTTTATGAAACGGGGCCATATAGTTTGGTTATGACATCAATATTTTACCTAGGTGAAATTGTTTAGGCTTATGT 2220
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2221 ACCTTCGTTCAAATATCCTCATGTAATTGCCATCTGTCACTCACTATATTCACAAAAATAAAACTCTACAACTC 2294
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2295 ATTCTAACATTGCTTACTTAAAAGCTACATAGCCCTATCGAAATGCGAGGATTAATGCTTTAATGCTTTTAGAG 2368
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2369 ACAGGGTCTCACTGTGTTGCCCAGGCTGGTCTCAAACTCCACCAAATGTACTTCTTATTCATTTTATGGAAAAG 2442
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2443 ACTAGGCTTTGCTTAGTATCATGTCCATGTTTCCTTCACCTCAGTGGAGCTTCTGAGTTTTATACTGCTCAAGA 2516
Query 1318 --------------------------------- 1317
Sbjct 2517 TCGTCATAAATAAAATTTTTTCTCATTGTCATA 2549
