Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12015
- Subject:
- XR_001752529.1
- Aligned Length:
- 3612
- Identities:
- 220
- Gaps:
- 3376
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CATTTTGTCTTGTCGGCTCCTGTGTGTAGGAGGGATTTCGGCCTGAGAGCGGGCCGAGGAGATTGGCGACGGTG 74
Query 1 --------------------------------------------------------------ATGATTTCGGCC 12
||||||||||||
Sbjct 75 TCGCCCGTGTTTTCGTTGGCGGGTGCCTGGGCTGGTGGGAACAGCCGCCCGAAGGAAGCACCATGATTTCGGCC 148
Query 13 GCGCAGTTGTTGGATGAGTTAATGGGCCGGGACCGAAACCTAGCCCCGGACGAGAAGCGCAGCAACGTGCGGTG 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GCGCAGTTGTTGGATGAGTTAATGGGCCGGGACCGAAACCTAGCCCCGGACGAGAAGCGCAGCAACGTGCGGTG 222
Query 87 GGACCACGAGAGCGTTTGTAAATATTATCTCTGTGGTTTTTGTCCTGCGGAATTGTTCACAAATACACGTTCTG 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GGACCACGAGAGCGTTTGTAAATATTATCTCTGTGGTTTTTGTCCTGCGGAATTGTTCACAAATACACGTTCTG 296
Query 161 ATCTTGATGTATTTGGAA--------GAGGA--------GATAACATTAGTGA------------TGTCAGCAA 206
||||||.|...|.||.|| ||.|| ||.||||.|| ||| |.|||..||
Sbjct 297 ATCTTGGTCCGTGTGAAAAAATTCATGATGAAAATCTACGAAAACAGTA-TGAGAAGAGCTCTCGTTTCATGAA 369
Query 207 A------------------TTTTTG-GA---------AGATGAC------AAGT--------GGAT-GGAGGAG 237
| |||||| || ||.|.|| |||| |||| .||.|||
Sbjct 370 AGTTGGCTATGAGAGAGATTTTTTGCGATACTTACAGAGCTTACTTGCAGAAGTAGAACGTAGGATCAGACGAG 443
Query 238 -------------------------------------------------------------------------- 237
Sbjct 444 GCCATGCTCGTTTGGCATTATCTCAAAACCAGCAGTCTTCTGGGGCCGCTGGCCCAACAGGCAAAAATGAAGAA 517
Query 238 -------------------------------------------------------------------------- 237
Sbjct 518 AAAATTCAGGTTCTAACAGACAAAATTGATGTACTTCTGCAACAGATTGAAGAATTAGGGTCTGAAGGAAAAGT 591
Query 238 -------------------------------------------------------------------------- 237
Sbjct 592 AGAAGAAGCCCAGGGGATGATGAAATTAGTTGAGCAATTAAAAGAAGAGAGAGAACTGCTAAGGTCCACAACGT 665
Query 238 -------------------------------------------------------------------------- 237
Sbjct 666 CGACAATTGAAAGCTTTGCTGCACAAGAAAAACAAATGGAAGTTTGTGAAGTATGTGGAGCCTTTTTAATAGTA 739
Query 238 -------------------------------------------------------------------------- 237
Sbjct 740 GGAGATGCCCAGTCCCGGGTAGATGACCATTTGATGGGAAAACAACACATGGGCTATGCCAAAATTAAAGCTAC 813
Query 238 -------------------------------------------------------------------------- 237
Sbjct 814 TGTAGAAGAATTAAAAGAAAAGTTAAGGAAAAGAACCGAAGAACCTGATCGTGATGAGCGTCTAAAAAAGGAGA 887
Query 238 -------------------------------------------------------------------------- 237
Sbjct 888 AGCAAGAAAGAGAAGAAAGAGAAAAAGAACGGGAGAGAGAAAGGGAAGAAAGAGAAAGGAAAAGACGAAGGGAA 961
Query 238 -------------------------------------------------------------------------- 237
Sbjct 962 GAGGAAGAAAGAGAAAAAGAAAGGGCTCGTGACAGAGAAAGAAGAAAGAGAAGTCGTTCACGAAGTAGACACTC 1035
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1036 AAGCCGAACATCAGACAGAAGATGCAGCAGGTCTCGGGACCACAAAAGGTCACGAAGTAGAGAAAGAAGGCGGA 1109
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1110 GCAGAAGTAGAGATCGACGAAGAAGCAGAAGCCATGATCGATCAGAAAGAAAACACAGATCTCGAAGTCGGGAT 1183
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1184 CGAAGAAGATCAAAAAGCCGGGATCGAAAGTCATATAAGCACAGGAGCAAAAGTCGGGACAGAGAACAAGATAG 1257
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1258 AAAATCCAAGGAGAAAGGGCAGAAGATAAGATTATTGGACTGACTACTAGTCCTCTACGGGACAACAAGACGAC 1331
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1332 TCTTCCTCATTGAAGCTACCTGTGCACCGGAGAAGCCCATAAGGCACAAAGGGAGGACTTTCCCACAAGAAAAG 1405
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1406 AGGGGATCTGATGATAAAAAAAGTAGTGTGAAGTCCGGTAGTCGAGAAAAGCAGAGTGAAGACACAAACACTGA 1479
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1480 ATCGAAGGAAAGTGATACTAAGAATGAGGTCAATGGGACCAGTGAAGACATTAAATCTGAAGGTGACACTCAGT 1553
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1554 CCAATTAAAACTGATCTGATAAGACCTCAGATCAGACAGAGGTAAGTGTATTGTTTCTCACTTTGATTAGGGCT 1627
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1628 TTTTGTTACTGTTTGACAGTGCAGCGTAAGTATGCACAGATGAAGATGGAACTAAGCCGAGTAAGAAGACATAC 1701
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1702 AAAAGCCTCTTCTGAAGGAAAAGACAGTGTAGTCCTGCAAAACATTTTGAGGTACATTGTTTTGTCTCAGCTAT 1775
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1776 TTTGTAGCAGACTCGTGCCCCCATTAGTGTGCCTCTTTGGAAATTATCGCCCACATTTGTAATATAGTCGCCAT 1849
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1850 TGAAAAGTTAATTATCCTTTTTTTAGGGATTTTGATGTCATTTCTTTTTTTTTTTTAATAAAAAGGTTGAACTG 1923
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1924 TTTTTTTTTTTCTTTTTGGTATTAAGTCCATCTTGTGTTGGTACATTGGCAGAGACATATGCTTTAAAAACTTA 1997
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1998 AATATTTCGGAGGCACATGTTGGACTACTTTGTTTTAATTAAACTGCTAGTATTTCTTTGTCAAGGATGTTTCT 2071
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2072 AGTTTTTTGCTTTATTGCCTTGCATTCTAATGCAGTTTGTTCTGTAACTCGAGAGCCAGTAGCATTGGATTGAT 2145
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2146 GGAAGTGTAGGGTTTATGAATTATTGCAGCTGACTACCATACCTCACACAGCGTTGGTGTTGTGAGCGGCCCAT 2219
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2220 GAAAAGCCAAATTAAAAATCAAGGATTCAGTCAAACTAAGCAGGTACTCATGCCAGGTACTCCTTTCTCTACCC 2293
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2294 ACATCCATGTTTGAATGCTATTGCCTGTGATCTTTACGCTTAACTGTTGTGTATCTTTTTTGTTCTTTACAAGA 2367
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2368 AGTGCAGAGGGGTTTTTTGTGTATTGCGTGAAAACTTATAAAACAAATGTTAACAGAATGGAATTTTTTTTCAA 2441
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2442 CTGTATGTAGGGCTGCAGTGGTGGCCAGAATTAGATATCTTTAAAGAATTTTAAATACAATAAACACTTCATAT 2515
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2516 TATTCGCCTTGTTACACTCAATGCAATTCTCAAGTCTATAAGAGGTATGTGCTTAATATTTCCTACTGTGTAGG 2589
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2590 AGAATTTGCAGTCAGCCATAGGTATGTAGGAATAGTCACTCACTGGCTGATACATTTAAAGCAGCAGTGTGAAT 2663
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2664 AGCAAGGACAGACACCTTCAATTTGTGAAATCAAAGAACTGATGCACTATATAGAACGAATTTGGGTTTTTAAA 2737
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2738 GAAATATTAAAAGTTAGGTACTGTAAGTGTTCTTAAAACCTGTAAACTTCATTCTGTGGGCTAGTGGTGTGGGA 2811
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2812 CAAAATATTCCTAATGAAAGGAAGTACCAATTAGTTGATTTGTTGGTGGCATTCCCCTTTTGGGAAAGCAATGT 2885
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2886 AAGGTTATGTCTGTGTATGTCATTCACACTTAGGCAAGCATACACAGGCACATGGCTTTAAGAACCACACTGAT 2959
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2960 GCCTTGATAATTAAAAAGAATACAAGCATTCCATGTACACATGTTAATTAGCAGTTAGTGACTGGGCCAACACT 3033
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3034 TTCTCATAAAAATTGGCCTTTTACATGTTGTCTAATTATCATTTTTCCCCAAATTTTGCGTTGTAGGACTACTG 3107
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3108 TTCGAAGATTTTTGGAAGAATACTGAGAACGGCATAAAGTGAAGATCGACATTTAAAAAATGAGGTGAAAGAAA 3181
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3182 GCTATAGTGGCATAGAAAAAGTATAAAGCTCAGTTAGTTTTTTTATTATTATTATTATTAAAAGTTAATTCAGG 3255
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3256 ACTGATGTGACCTACCAGATTTCAGAACATGTGTTAATAGTATATATGCCACTGAAAACTTAGGTCCTGTATCA 3329
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3330 TACTTTTTTCTTTAAGACTTTTTAAGAAATATTACTTAAACATGTGGCTTGCTCAGTGTTTAATTGCAAGTTTT 3403
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3404 CAATCTTGGACTTTGAAAACAGGATTAAACGTTAGTATTCGTGTGAATCAGACTAAGTGGGATTTCATTTTTAC 3477
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3478 AACTCTGCTCTACTTAGCCTTTGGATTTAGAAGTAAAAATAAAGTATCTCTGACTTTCTGTTACAAAGTTGATT 3551
Query 238 ------------------------------------------------------------ 237
Sbjct 3552 GTCTCTGTCATTGAAAAGTTTTAGTATTAATCTTTTTCTAATAAAGTTATTGACTCTGAA 3611
