Construct: ORF ccsbBroadEn_12015
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014643.1_s300c1, BRDN0000397283
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LUC7L3 (51747)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51747 | LUC7L3 | LUC7 like 3 pre-mRNA splici... | NM_006107.3 | 16.9% | 13.5% | (many diffs) |
| 2 | human | 51747 | LUC7L3 | LUC7 like 3 pre-mRNA splici... | NM_016424.5 | 16.9% | 13.5% | (many diffs) |
| 3 | human | 51747 | LUC7L3 | LUC7 like 3 pre-mRNA splici... | XM_005257452.1 | 16.5% | 13.2% | (many diffs) |
| 4 | human | 51747 | LUC7L3 | LUC7 like 3 pre-mRNA splici... | XM_005257449.2 | 15.5% | 12.4% | (many diffs) |
| 5 | human | 51747 | LUC7L3 | LUC7 like 3 pre-mRNA splici... | NM_001330330.2 | 14.9% | 11.9% | (many diffs) |
| 6 | human | 51747 | LUC7L3 | LUC7 like 3 pre-mRNA splici... | XR_002958022.1 | 6.3% | 1_150del;345A>T;388_3713del | |
| 7 | human | 51747 | LUC7L3 | LUC7 like 3 pre-mRNA splici... | XR_001752530.1 | 6.2% | (many diffs) | |
| 8 | human | 51747 | LUC7L3 | LUC7 like 3 pre-mRNA splici... | XR_001752528.1 | 6.1% | (many diffs) | |
| 9 | human | 51747 | LUC7L3 | LUC7 like 3 pre-mRNA splici... | XR_001752529.1 | 6% | (many diffs) | |
| 10 | human | 51747 | LUC7L3 | LUC7 like 3 pre-mRNA splici... | XR_001752531.1 | 6% | (many diffs) | |
| 11 | human | 51747 | LUC7L3 | LUC7 like 3 pre-mRNA splici... | XR_001752527.1 | 5.9% | (many diffs) | |
| 12 | mouse | 67684 | Luc7l3 | LUC7-like 3 (S. cerevisiae) | XM_006534010.3 | 15.5% | 13.5% | (many diffs) |
| 13 | mouse | 67684 | Luc7l3 | LUC7-like 3 (S. cerevisiae) | XM_006534011.3 | 15.5% | 13.5% | (many diffs) |
| 14 | mouse | 67684 | Luc7l3 | LUC7-like 3 (S. cerevisiae) | NM_026313.1 | 13.7% | 11.9% | (many diffs) |
| 15 | mouse | 67684 | Luc7l3 | LUC7-like 3 (S. cerevisiae) | XR_001780044.1 | 9.6% | (many diffs) | |
| 16 | mouse | 67684 | Luc7l3 | LUC7-like 3 (S. cerevisiae) | XR_001780043.1 | 5.8% | (many diffs) | |
| 17 | mouse | 67684 | Luc7l3 | LUC7-like 3 (S. cerevisiae) | XR_388511.3 | 5.6% | (many diffs) | |
| 18 | mouse | 67684 | Luc7l3 | LUC7-like 3 (S. cerevisiae) | XR_001780045.1 | 5.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 303
- ORF length:
- 237
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaGTTTG TACAAAAAAG 61 TTGGCATGAT TTCGGCCGCG CAGTTGTTGG ATGAGTTAAT GGGCCGGGAC CGAAACCTAG 121 CCCCGGACGA GAAGCGCAGC AACGTGCGGT GGGACCACGA GAGCGTTTGT AAATATTATC 181 TCTGTGGTTT TTGTCCTGCG GAATTGTTCA CAAATACACG TTCTGATCTT GATGTATTTG 241 GAAGAGGAGA TAACATTAGT GATGTCAGCA AATTTTTGGA AGATGACAAG TGGATGGAGG 301 AGTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 361 gcaacgaac