Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12015
- Subject:
- XR_001780043.1
- Aligned Length:
- 3507
- Identities:
- 204
- Gaps:
- 3285
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGTCTCCACGGGCGCACGGCATGCTGGGAAGGTGCCCGGGCGGCGGCCATTTTGTCTTCTCGGCTCCTCTCTGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAGAGGCTTTTCGAGCTTGAGAGTGGGCCGAGGGGGCTTGGTTCGGCGGCCGGGCGGCTGGTGGGGTTTTTTAT 148
Query 1 -----------------------------------------------ATGATTTCGGCCGCGCAGTTGTTGGAT 27
||||||||.||||||||||||.|||||
Sbjct 149 CGGGTGGGTGCTAGGGCTGGCGTGAGCAGCCGCCCGGAGGAAGCACCATGATTTCTGCCGCGCAGTTGCTGGAT 222
Query 28 GAGTTAATGGGCCGGGACCGAAACCTAGCCCCGGACGAGAAGCGCAGCAACGTGCGGTGGGACCACGAGAGCGT 101
||||||||||||||||||||||||||.||||||||.||||||||||||||||||||.|||||||||||||||||
Sbjct 223 GAGTTAATGGGCCGGGACCGAAACCTCGCCCCGGATGAGAAGCGCAGCAACGTGCGCTGGGACCACGAGAGCGT 296
Query 102 TTGTAAATATTATCTCTGTGGTTTTTGTCCTGCGGAATTGTTCACAAATACACGTTCTGATCTTG----ATGTA 171
||||||||||||||||||.||||||||||||||||||||||||||||||||.||||||||||||| ||||
Sbjct 297 TTGTAAATATTATCTCTGCGGTTTTTGTCCTGCGGAATTGTTCACAAATACCCGTTCTGATCTTGGTCCATGT- 369
Query 172 TTTGGAAGAGGAGATAACATTAGTGATG------TCAGCAA--ATTTTTGGAAG------------ATGACAAG 225
||.||.|||..||||| |.||.|| |.|.|..|||| |||| |||
Sbjct 370 ------------GAAAAAATTCATGATGAAAATCTAAGAAAACAGTATGAGAAGAGTTCTCGCTTTATGA-AAG 430
Query 226 TGG---ATGGAG-GAG---------------------------------------------------------- 237
|.| || ||| |||
Sbjct 431 TTGGCTAT-GAGAGAGATTTTTTGCGATACTTACAGAGTTTACTTGCCGAGGTAGAGCGCAGAATTAGACGAGG 503
Query 238 -------------------------------------------------------------------------- 237
Sbjct 504 TCATGCTCGTTTGGCATTATCTCAAAATCAGCAGTCTTCTGGGGCTGCTGGTCCAACAGGCAAAAATGAAGAAA 577
Query 238 -------------------------------------------------------------------------- 237
Sbjct 578 AAATTCAGGTTCTGACAGACAAAATTGATGTGCTTCTACAGCAGATTGAAGAGTTAGGATCTGAAGGAAAGGTA 651
Query 238 -------------------------------------------------------------------------- 237
Sbjct 652 GAAGAAGCCCAGGGAATGATGAAATTGGTTGAACAGTTAAAGGAAGAGAGAGAATTACTAAGATCTACAACCTC 725
Query 238 -------------------------------------------------------------------------- 237
Sbjct 726 GACTATAGAAAGTTTTGCTGCCCAAGAAAAACAGATGGAAGTTTGTGAAGTGTGTGGAGCCTTTTTGATAGTAG 799
Query 238 -------------------------------------------------------------------------- 237
Sbjct 800 GAGACGCCCAGTCCCGAGTAGATGACCATCTGATGGGAAAGCAACACATGGGCTATGCCAAAATTAAAGCCACT 873
Query 238 -------------------------------------------------------------------------- 237
Sbjct 874 GTGGAAGAATTAAAAGAAAAGTTAAGAAAAAGAACAGAGGAACCTGATCGGGATGAACGTCTCAAAAAAGAGAA 947
Query 238 -------------------------------------------------------------------------- 237
Sbjct 948 GCAAGAAAGAGAGGAAAGAGAAAAAGAGCGGGAGAGAGAAAGAGAAGAACGGGAAAGAAAAAGACGAAGAGAAG 1021
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1022 AGGAAGAAAGGGAAAAAGAAAGAGCTCGTGACAGAGAAAGGAGAAAGAGAAGTCGTTCACGGAGTAGACACTCA 1095
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1096 AGCCGAACTTCTGACCGGAGATGCAGCAGGTCTCGGGACCACAAAAGATCACGGAGTAGAGACAGAAGGCGAAG 1169
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1170 CAGAAGTAGAGATCGACGAAGAAGCAGAAGCCATGACAGATCAGAAAGAAAACATAGATCTCGCAGTCGGGATC 1243
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1244 GAAGACGGTCAAAAAGCCGAGATCGAAAGTCATATAAGCACAGGAGCAAAAGTCGGGACAGAGAACAAGATAGA 1317
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1318 AAGTCCAAGGAGAAAGGCCAGAAGATAAGATTTTTGGACTACTAGTCCTCTACGGAGCAACAAGACGACTCTTC 1391
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1392 CTCATTGAAGCTACCTGTGCACCGGAGAAGCCCATAAGGCTCAAAGGGAGGACTTTCCCACAAGAAAAGAAGGG 1465
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1466 ATCTGATGATAAAAAGAGTAGTGTGAAGTCCAGTAGTCGAGAAAAGCAGAGTGAAGACACAAACCCTGAATCGA 1539
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1540 AGGAAAGTGACACTAAGAATGAGGTCAATGGGACCAGTGAAGACATTAAATCTGAAGTGCAGCGTAAGTATGCA 1613
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1614 CAGATGAAGATGGAGCTAAGCCGAGTAAGAAGACATACAAAAGCCTCTTCTGAAGGAAAAGACAGTGTAGTCCT 1687
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1688 GCAAAACATTTTGAGGTACATTGTTTTGTCTCAGCTATTTTGTAGCAGACTTCGTGCCCCCATTAGTGTGCCTC 1761
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1762 TTTGGAAATTACTGTCCACGTATGTAATATAGTCGCCATTGAAAAGTTAATTATCCTTTTTTTAGGGATTTTGC 1835
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1836 TGTCATTTCTTTTTCTTTTTCTTTTTTTTTTTAATAAAAAGGTTGAACTGTTTTTTTTTTCTTTTTGGTATTAA 1909
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1910 GTCCATCTTGTGTTGGTACATTGGCAGAAACATATGCTTTAAAACTTAACTATTTCTGAGGCACATGTTGGACT 1983
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1984 ACTTTGTTTTAATTAAACTGCTAGTATTTATTTGTCCAGGATGTTTCTAGTTTTTTGCTTTATTGCCTTGCATT 2057
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2058 CTAATGCAGTTTGTTCTGTAACTCGAGAGCCAGTAGCATTGGATTGATGGAAGTGTAGGGTTTATGAATTATTG 2131
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2132 CAGCTGACTACCATACCTCACACAGCGTTGGTGTTGTGAGCGGCCCATGAAAAGCCAAATTAGAAATCAAGGAT 2205
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2206 TCAGTCAAACTAAGCAGGTATTCATGCCAGGTACTCCTTTCTCTACCCACATCCGTGTTTGAATGCTATTGCCT 2279
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2280 GTGACCTTTACGCTTAACTGTTGTGTATCCTTTTTGTTCTTTACAAGAAGCACAGAGGGGTTTTTTGTGTATTG 2353
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2354 CGTGAAATCTTACAAAGCCTATGTTAACAGAATGGAATTTTTTTTCAACTGTGTGTAGGGATGCAGTGGTGCCC 2427
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2428 AGAATTAGATATCTTTAAAGAATTTTAAATACAATAAACACTTCATATTACCCGCCTTGTTACATTCAGTGCAA 2501
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2502 TTCTCAAGTCTTTAAGAGGTATGTGTTTAATGTTTCCTACTGTGTAGGAGAATTTGCAGTCAGCCATAGTATAG 2575
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2576 AGGAATAATCACTGGCTGAGACATCGAAAGCAACAGCATCTAGCCAGGACAGACACTTGGATCAGTGACACAAA 2649
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2650 GAACTGATTGACTATCAGATGAGGTTGGGTTCTTAAAGAACTGTTTCAAGCTAGGTTTTATAGATATTCTTAAA 2723
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2724 ACCTCTAACTGTTCAATCTTCGGGCTAGTGGTGTGGGATGAAATATTCCTAATGAAAGGAAGTACCAATTAGTT 2797
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2798 GATTTATTGGTGGCATTCCTGTTTTAGAAAAGCAGTGTAGTTCTGTCTGTGTGAACCATTCACTCATAGGCAGC 2871
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2872 ACACACAGGCACATGGCTCTAAGCACCACACTGATTGATTGATGCCTTGATGTAAAAACAGTACATTTTATATA 2945
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2946 CACGTGTCATGGTTAGCAGTTAGCGACTGGGCCAACACTTAGTCATAAAAGTTTACCTTTTATATGCTGTCTAA 3019
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3020 TTATCAATTTTCCCCAAATTTTGCATTGTAGGACTACTGTTGAAGAGTTTTTGAAGAATACTGAAAACGGAATA 3093
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3094 AAGTGAAGATCAACATTAAAATGAGGTGAAAGAAAGCTATAGTGGCATAGAAAAAGTATAAAGCTCAGTTAGTT 3167
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3168 ATTTGGTTTTTTTATTATTATTATTAAAAATTAATTCAGGACTGTTGTGACCTACCAGATTTCAGAACATGTGT 3241
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3242 TAATAGCACATATGCCACTTTGAAAACTTAGGTCCTGTATCATATTTTTTCTTTAAGACTTTTTAAGAAATATT 3315
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3316 ACCTAAACATGTGGCTTGCTCAGTGTTTACTTGCAAGTTTTCAGTCTTGGACTTTGAAGCCAGGATTCCACGTT 3389
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3390 AGTGCTCATGTGGAGCAGACTGGGGCTCCGTTTTACACTTGTGCTCTCCTTAGCCTTTGGATTTAGAAGTGAAA 3463
Query 238 ----------------------------- 237
Sbjct 3464 ATAAAGTATCTCTGACTTCCTGTTGCAGA 3492
