Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12015
- Subject:
- XR_001780045.1
- Aligned Length:
- 3636
- Identities:
- 204
- Gaps:
- 3414
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGTGTCTCCACGGGCGCACGGCATGCTGGGAAGGTGCCCGGGCGGCGGCCATTTTGTCTTCTCGGCTCCTCTCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGAAGAGGCTTTTCGAGCTTGAGAGTGGGCCGAGGGGGCTTGGTTCGGCGGCCGGGCGGCTGGTGGGGTTTTTT 148
Query 1 -------------------------------------------------ATGATTTCGGCCGCGCAGTTGTTGG 25
||||||||.||||||||||||.|||
Sbjct 149 ATCGGGTGGGTGCTAGGGCTGGCGTGAGCAGCCGCCCGGAGGAAGCACCATGATTTCTGCCGCGCAGTTGCTGG 222
Query 26 ATGAGTTAATGGGCCGGGACCGAAACCTAGCCCCGGACGAGAAGCGCAGCAACGTGCGGTGGGACCACGAGAGC 99
||||||||||||||||||||||||||||.||||||||.||||||||||||||||||||.|||||||||||||||
Sbjct 223 ATGAGTTAATGGGCCGGGACCGAAACCTCGCCCCGGATGAGAAGCGCAGCAACGTGCGCTGGGACCACGAGAGC 296
Query 100 GTTTGTAAATATTATCTCTGTGGTTTTTGTCCTGCGGAATTGTTCACAAATACACGTTCTGATCTTG----ATG 169
||||||||||||||||||||.||||||||||||||||||||||||||||||||.||||||||||||| |||
Sbjct 297 GTTTGTAAATATTATCTCTGCGGTTTTTGTCCTGCGGAATTGTTCACAAATACCCGTTCTGATCTTGGTCCATG 370
Query 170 TATTTGGAAGAGGAGATAACATTAGTGATG------TCAGCAA--ATTTTTGGAAG------------ATGACA 223
| ||.||.|||..||||| |.||.|| |.|.|..|||| |||| |
Sbjct 371 T-------------GAAAAAATTCATGATGAAAATCTAAGAAAACAGTATGAGAAGAGTTCTCGCTTTATGA-A 430
Query 224 AGTGG---ATGGAG-GAG-------------------------------------------------------- 237
|||.| || ||| |||
Sbjct 431 AGTTGGCTAT-GAGAGAGATTTTTTGCGATACTTACAGAGTTTACTTGCCGAGGTAGAGCGCAGAATTAGACGA 503
Query 238 -------------------------------------------------------------------------- 237
Sbjct 504 GGTCATGCTCGTTTGGCATTATCTCAAAATCAGCAGTCTTCTGGGGCTGCTGGTCCAACAGGCAAAAATGAAGA 577
Query 238 -------------------------------------------------------------------------- 237
Sbjct 578 AAAAATTCAGGTTCTGACAGACAAAATTGATGTGCTTCTACAGCAGATTGAAGAGTTAGGATCTGAAGGAAAGG 651
Query 238 -------------------------------------------------------------------------- 237
Sbjct 652 TAGAAGAAGCCCAGGGAATGATGAAATTGGTTGAACAGTTAAAGGAAGAGAGAGAATTACTAAGATCTACAACC 725
Query 238 -------------------------------------------------------------------------- 237
Sbjct 726 TCGATCTCTGAAACACGTTTACCAGCTTATTATAAAGGATATTACAAAGGATGCAGATGAAGAAGAGATGCATA 799
Query 238 -------------------------------------------------------------------------- 237
Sbjct 800 GGTATGGGAGAAGGGTTGCGAAGCTTCCATCTCCTCTTCAGGTTCACCACCTTCTAGGAACCTCCATGTATTCA 873
Query 238 -------------------------------------------------------------------------- 237
Sbjct 874 GACTATAGAAAGTTTTGCTGCCCAAGAAAAACAGATGGAAGTTTGTGAAGTGTGTGGAGCCTTTTTGATAGTAG 947
Query 238 -------------------------------------------------------------------------- 237
Sbjct 948 GAGACGCCCAGTCCCGAGTAGATGACCATCTGATGGGAAAGCAACACATGGGCTATGCCAAAATTAAAGCCACT 1021
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1022 GTGGAAGAATTAAAAGAAAAGTTAAGAAAAAGAACAGAGGAACCTGATCGGGATGAACGTCTCAAAAAAGAGAA 1095
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1096 GCAAGAAAGAGAGGAAAGAGAAAAAGAGCGGGAGAGAGAAAGAGAAGAACGGGAAAGAAAAAGACGAAGAGAAG 1169
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1170 AGGAAGAAAGGGAAAAAGAAAGAGCTCGTGACAGAGAAAGGAGAAAGAGAAGTCGTTCACGGAGTAGACACTCA 1243
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1244 AGCCGAACTTCTGACCGGAGATGCAGCAGGTCTCGGGACCACAAAAGATCACGGAGTAGAGACAGAAGGCGAAG 1317
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1318 CAGAAGTAGAGATCGACGAAGAAGCAGAAGCCATGACAGATCAGAAAGAAAACATAGATCTCGCAGTCGGGATC 1391
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1392 GAAGACGGTCAAAAAGCCGAGATCGAAAGTCATATAAGCACAGGAGCAAAAGTCGGGACAGAGAACAAGATAGA 1465
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1466 AAGTCCAAGGAGAAAGAAAAGAAGGGATCTGATGATAAAAAGAGTAGTGTGAAGTCCAGTAGTCGAGAAAAGCA 1539
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1540 GAGTGAAGACACAAACCCTGAATCGAAGGAAAGTGACACTAAGAATGAGGTCAATGGGACCAGTGAAGACATTA 1613
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1614 AATCTGAAGGTGACACTCAGTCCAATTAAAACTGATCTGATAAGACCTCAGATCAGACAGAGGTAAGTGTATTG 1687
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1688 TTTCTCACTTTGATTAGGGCTTTTTGTTACTGTTTGACAGTGCAGCGTAAGTATGCACAGATGAAGATGGAGCT 1761
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1762 AAGCCGAGTAAGAAGACATACAAAAGCCTCTTCTGAAGGAAAAGACAGTGTAGTCCTGCAAAACATTTTGAGGT 1835
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1836 ACATTGTTTTGTCTCAGCTATTTTGTAGCAGACTTCGTGCCCCCATTAGTGTGCCTCTTTGGAAATTACTGTCC 1909
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1910 ACGTATGTAATATAGTCGCCATTGAAAAGTTAATTATCCTTTTTTTAGGGATTTTGCTGTCATTTCTTTTTCTT 1983
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1984 TTTCTTTTTTTTTTTAATAAAAAGGTTGAACTGTTTTTTTTTTCTTTTTGGTATTAAGTCCATCTTGTGTTGGT 2057
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2058 ACATTGGCAGAAACATATGCTTTAAAACTTAACTATTTCTGAGGCACATGTTGGACTACTTTGTTTTAATTAAA 2131
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2132 CTGCTAGTATTTATTTGTCCAGGATGTTTCTAGTTTTTTGCTTTATTGCCTTGCATTCTAATGCAGTTTGTTCT 2205
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2206 GTAACTCGAGAGCCAGTAGCATTGGATTGATGGAAGTGTAGGGTTTATGAATTATTGCAGCTGACTACCATACC 2279
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2280 TCACACAGCGTTGGTGTTGTGAGCGGCCCATGAAAAGCCAAATTAGAAATCAAGGATTCAGTCAAACTAAGCAG 2353
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2354 GTATTCATGCCAGGTACTCCTTTCTCTACCCACATCCGTGTTTGAATGCTATTGCCTGTGACCTTTACGCTTAA 2427
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2428 CTGTTGTGTATCCTTTTTGTTCTTTACAAGAAGCACAGAGGGGTTTTTTGTGTATTGCGTGAAATCTTACAAAG 2501
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2502 CCTATGTTAACAGAATGGAATTTTTTTTCAACTGTGTGTAGGGATGCAGTGGTGCCCAGAATTAGATATCTTTA 2575
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2576 AAGAATTTTAAATACAATAAACACTTCATATTACCCGCCTTGTTACATTCAGTGCAATTCTCAAGTCTTTAAGA 2649
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2650 GGTATGTGTTTAATGTTTCCTACTGTGTAGGAGAATTTGCAGTCAGCCATAGTATAGAGGAATAATCACTGGCT 2723
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2724 GAGACATCGAAAGCAACAGCATCTAGCCAGGACAGACACTTGGATCAGTGACACAAAGAACTGATTGACTATCA 2797
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2798 GATGAGGTTGGGTTCTTAAAGAACTGTTTCAAGCTAGGTTTTATAGATATTCTTAAAACCTCTAACTGTTCAAT 2871
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2872 CTTCGGGCTAGTGGTGTGGGATGAAATATTCCTAATGAAAGGAAGTACCAATTAGTTGATTTATTGGTGGCATT 2945
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2946 CCTGTTTTAGAAAAGCAGTGTAGTTCTGTCTGTGTGAACCATTCACTCATAGGCAGCACACACAGGCACATGGC 3019
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3020 TCTAAGCACCACACTGATTGATTGATGCCTTGATGTAAAAACAGTACATTTTATATACACGTGTCATGGTTAGC 3093
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3094 AGTTAGCGACTGGGCCAACACTTAGTCATAAAAGTTTACCTTTTATATGCTGTCTAATTATCAATTTTCCCCAA 3167
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3168 ATTTTGCATTGTAGGACTACTGTTGAAGAGTTTTTGAAGAATACTGAAAACGGAATAAAGTGAAGATCAACATT 3241
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3242 AAAATGAGGTGAAAGAAAGCTATAGTGGCATAGAAAAAGTATAAAGCTCAGTTAGTTATTTGGTTTTTTTATTA 3315
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3316 TTATTATTAAAAATTAATTCAGGACTGTTGTGACCTACCAGATTTCAGAACATGTGTTAATAGCACATATGCCA 3389
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3390 CTTTGAAAACTTAGGTCCTGTATCATATTTTTTCTTTAAGACTTTTTAAGAAATATTACCTAAACATGTGGCTT 3463
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3464 GCTCAGTGTTTACTTGCAAGTTTTCAGTCTTGGACTTTGAAGCCAGGATTCCACGTTAGTGCTCATGTGGAGCA 3537
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3538 GACTGGGGCTCCGTTTTACACTTGTGCTCTCCTTAGCCTTTGGATTTAGAAGTGAAAATAAAGTATCTCTGACT 3611
Query 238 ---------- 237
Sbjct 3612 TCCTGTTGCA 3621
