Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12015
- Subject:
- XR_388511.3
- Aligned Length:
- 3612
- Identities:
- 204
- Gaps:
- 3390
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGTCTCCACGGGCGCACGGCATGCTGGGAAGGTGCCCGGGCGGCGGCCATTTTGTCTTCTCGGCTCCTCTCTGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAGAGGCTTTTCGAGCTTGAGAGTGGGCCGAGGGGGCTTGGTTCGGCGGCCGGGCGGCTGGTGGGGTTTTTTAT 148
Query 1 -----------------------------------------------ATGATTTCGGCCGCGCAGTTGTTGGAT 27
||||||||.||||||||||||.|||||
Sbjct 149 CGGGTGGGTGCTAGGGCTGGCGTGAGCAGCCGCCCGGAGGAAGCACCATGATTTCTGCCGCGCAGTTGCTGGAT 222
Query 28 GAGTTAATGGGCCGGGACCGAAACCTAGCCCCGGACGAGAAGCGCAGCAACGTGCGGTGGGACCACGAGAGCGT 101
||||||||||||||||||||||||||.||||||||.||||||||||||||||||||.|||||||||||||||||
Sbjct 223 GAGTTAATGGGCCGGGACCGAAACCTCGCCCCGGATGAGAAGCGCAGCAACGTGCGCTGGGACCACGAGAGCGT 296
Query 102 TTGTAAATATTATCTCTGTGGTTTTTGTCCTGCGGAATTGTTCACAAATACACGTTCTGATCTTG----ATGTA 171
||||||||||||||||||.||||||||||||||||||||||||||||||||.||||||||||||| ||||
Sbjct 297 TTGTAAATATTATCTCTGCGGTTTTTGTCCTGCGGAATTGTTCACAAATACCCGTTCTGATCTTGGTCCATGT- 369
Query 172 TTTGGAAGAGGAGATAACATTAGTGATG------TCAGCAA--ATTTTTGGAAG------------ATGACAAG 225
||.||.|||..||||| |.||.|| |.|.|..|||| |||| |||
Sbjct 370 ------------GAAAAAATTCATGATGAAAATCTAAGAAAACAGTATGAGAAGAGTTCTCGCTTTATGA-AAG 430
Query 226 TGG---ATGGAG-GAG---------------------------------------------------------- 237
|.| || ||| |||
Sbjct 431 TTGGCTAT-GAGAGAGATTTTTTGCGATACTTACAGAGTTTACTTGCCGAGGTAGAGCGCAGAATTAGACGAGG 503
Query 238 -------------------------------------------------------------------------- 237
Sbjct 504 TCATGCTCGTTTGGCATTATCTCAAAATCAGCAGTCTTCTGGGGCTGCTGGTCCAACAGGCAAAAATGAAGAAA 577
Query 238 -------------------------------------------------------------------------- 237
Sbjct 578 AAATTCAGGTTCTGACAGACAAAATTGATGTGCTTCTACAGCAGATTGAAGAGTTAGGATCTGAAGGAAAGGTA 651
Query 238 -------------------------------------------------------------------------- 237
Sbjct 652 GAAGAAGCCCAGGGAATGATGAAATTGGTTGAACAGTTAAAGGAAGAGAGAGAATTACTAAGATCTACAACCTC 725
Query 238 -------------------------------------------------------------------------- 237
Sbjct 726 GACTATAGAAAGTTTTGCTGCCCAAGAAAAACAGATGGAAGTTTGTGAAGTGTGTGGAGCCTTTTTGATAGTAG 799
Query 238 -------------------------------------------------------------------------- 237
Sbjct 800 GAGACGCCCAGTCCCGAGTAGATGACCATCTGATGGGAAAGCAACACATGGGCTATGCCAAAATTAAAGCCACT 873
Query 238 -------------------------------------------------------------------------- 237
Sbjct 874 GTGGAAGAATTAAAAGAAAAGTTAAGAAAAAGAACAGAGGAACCTGATCGGGATGAACGTCTCAAAAAAGAGAA 947
Query 238 -------------------------------------------------------------------------- 237
Sbjct 948 GCAAGAAAGAGAGGAAAGAGAAAAAGAGCGGGAGAGAGAAAGAGAAGAACGGGAAAGAAAAAGACGAAGAGAAG 1021
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1022 AGGAAGAAAGGGAAAAAGAAAGAGCTCGTGACAGAGAAAGGAGAAAGAGAAGTCGTTCACGGAGTAGACACTCA 1095
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1096 AGCCGAACTTCTGACCGGAGATGCAGCAGGTCTCGGGACCACAAAAGATCACGGAGTAGAGACAGAAGGCGAAG 1169
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1170 CAGAAGTAGAGATCGACGAAGAAGCAGAAGCCATGACAGATCAGAAAGAAAACATAGATCTCGCAGTCGGGATC 1243
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1244 GAAGACGGTCAAAAAGCCGAGATCGAAAGTCATATAAGCACAGGAGCAAAAGTCGGGACAGAGAACAAGATAGA 1317
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1318 AAGTCCAAGGAGAAAGGCCAGAAGATAAGATTTTTGGACTACTAGTCCTCTACGGAGCAACAAGACGACTCTTC 1391
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1392 CTCATTGAAGCTACCTGTGCACCGGAGAAGCCCATAAGGCTCAAAGGGAGGACTTTCCCACAAGAAAAGAAGGG 1465
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1466 ATCTGATGATAAAAAGAGTAGTGTGAAGTCCAGTAGTCGAGAAAAGCAGAGTGAAGACACAAACCCTGAATCGA 1539
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1540 AGGAAAGTGACACTAAGAATGAGGTCAATGGGACCAGTGAAGACATTAAATCTGAAGGTGACACTCAGTCCAAT 1613
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1614 TAAAACTGATCTGATAAGACCTCAGATCAGACAGAGGTAAGTGTATTGTTTCTCACTTTGATTAGGGCTTTTTG 1687
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1688 TTACTGTTTGACAGTGCAGCGTAAGTATGCACAGATGAAGATGGAGCTAAGCCGAGTAAGAAGACATACAAAAG 1761
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1762 CCTCTTCTGAAGGAAAAGACAGTGTAGTCCTGCAAAACATTTTGAGGTACATTGTTTTGTCTCAGCTATTTTGT 1835
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1836 AGCAGACTTCGTGCCCCCATTAGTGTGCCTCTTTGGAAATTACTGTCCACGTATGTAATATAGTCGCCATTGAA 1909
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1910 AAGTTAATTATCCTTTTTTTAGGGATTTTGCTGTCATTTCTTTTTCTTTTTCTTTTTTTTTTTAATAAAAAGGT 1983
Query 238 -------------------------------------------------------------------------- 237
Sbjct 1984 TGAACTGTTTTTTTTTTCTTTTTGGTATTAAGTCCATCTTGTGTTGGTACATTGGCAGAAACATATGCTTTAAA 2057
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2058 ACTTAACTATTTCTGAGGCACATGTTGGACTACTTTGTTTTAATTAAACTGCTAGTATTTATTTGTCCAGGATG 2131
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2132 TTTCTAGTTTTTTGCTTTATTGCCTTGCATTCTAATGCAGTTTGTTCTGTAACTCGAGAGCCAGTAGCATTGGA 2205
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2206 TTGATGGAAGTGTAGGGTTTATGAATTATTGCAGCTGACTACCATACCTCACACAGCGTTGGTGTTGTGAGCGG 2279
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2280 CCCATGAAAAGCCAAATTAGAAATCAAGGATTCAGTCAAACTAAGCAGGTATTCATGCCAGGTACTCCTTTCTC 2353
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2354 TACCCACATCCGTGTTTGAATGCTATTGCCTGTGACCTTTACGCTTAACTGTTGTGTATCCTTTTTGTTCTTTA 2427
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2428 CAAGAAGCACAGAGGGGTTTTTTGTGTATTGCGTGAAATCTTACAAAGCCTATGTTAACAGAATGGAATTTTTT 2501
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2502 TTCAACTGTGTGTAGGGATGCAGTGGTGCCCAGAATTAGATATCTTTAAAGAATTTTAAATACAATAAACACTT 2575
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2576 CATATTACCCGCCTTGTTACATTCAGTGCAATTCTCAAGTCTTTAAGAGGTATGTGTTTAATGTTTCCTACTGT 2649
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2650 GTAGGAGAATTTGCAGTCAGCCATAGTATAGAGGAATAATCACTGGCTGAGACATCGAAAGCAACAGCATCTAG 2723
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2724 CCAGGACAGACACTTGGATCAGTGACACAAAGAACTGATTGACTATCAGATGAGGTTGGGTTCTTAAAGAACTG 2797
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2798 TTTCAAGCTAGGTTTTATAGATATTCTTAAAACCTCTAACTGTTCAATCTTCGGGCTAGTGGTGTGGGATGAAA 2871
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2872 TATTCCTAATGAAAGGAAGTACCAATTAGTTGATTTATTGGTGGCATTCCTGTTTTAGAAAAGCAGTGTAGTTC 2945
Query 238 -------------------------------------------------------------------------- 237
Sbjct 2946 TGTCTGTGTGAACCATTCACTCATAGGCAGCACACACAGGCACATGGCTCTAAGCACCACACTGATTGATTGAT 3019
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3020 GCCTTGATGTAAAAACAGTACATTTTATATACACGTGTCATGGTTAGCAGTTAGCGACTGGGCCAACACTTAGT 3093
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3094 CATAAAAGTTTACCTTTTATATGCTGTCTAATTATCAATTTTCCCCAAATTTTGCATTGTAGGACTACTGTTGA 3167
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3168 AGAGTTTTTGAAGAATACTGAAAACGGAATAAAGTGAAGATCAACATTAAAATGAGGTGAAAGAAAGCTATAGT 3241
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3242 GGCATAGAAAAAGTATAAAGCTCAGTTAGTTATTTGGTTTTTTTATTATTATTATTAAAAATTAATTCAGGACT 3315
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3316 GTTGTGACCTACCAGATTTCAGAACATGTGTTAATAGCACATATGCCACTTTGAAAACTTAGGTCCTGTATCAT 3389
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3390 ATTTTTTCTTTAAGACTTTTTAAGAAATATTACCTAAACATGTGGCTTGCTCAGTGTTTACTTGCAAGTTTTCA 3463
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3464 GTCTTGGACTTTGAAGCCAGGATTCCACGTTAGTGCTCATGTGGAGCAGACTGGGGCTCCGTTTTACACTTGTG 3537
Query 238 ------------------------------------------------------------ 237
Sbjct 3538 CTCTCCTTAGCCTTTGGATTTAGAAGTGAAAATAAAGTATCTCTGACTTCCTGTTGCAGA 3597
