Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12044
- Subject:
- XM_006506872.2
- Aligned Length:
- 3622
- Identities:
- 2154
- Gaps:
- 1067
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGGCCGACCTGAACCTGGAGTGGATCTGCTCGCTGCCGCGCTCCTGGACGTACGGGATCACTAGGGGCGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCGCGTCTTCTTCATCAACGAGGAGGCCAAGAGCACCACCTGGCTACACCCGGTCACCGGCGAGGCCGTGGTCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCGGGCACCGGCGGCAGAGCACAGATTTGCCCACTGGCTGGGAAGAAGCATATACGTTCGAAGGTGCAAGATAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TATATAAACCACAATGAAAGGAAAGTGACCTGCAAGCATCCGGTTACAGGACAGCCATCCCAAGACAACTGTAT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTTTGTTGTGAATGATCAGACTGTTGCAACCATGACGTCCGAAGACAAGAAGGAACGACCCATAAGTATGATAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATGAAGCTTCCAATTACAACATGGCTTCAGATTATGCAGTGCATCCCATGAGCCCTGTGGGCAGGACCTCGCGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCTCCAAAAAGGTTCATAATTTTGGGAAAAGGTCCAATTCAATTAAAAGGAACCCTAATGCACCTGTGGTCCG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCGTGGCTGGCTGTATAAGCAGGACAGCACCGGCATGAAGCTGTGGAAGAAGCGCTGGTTTGTGCTCTCTGACC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTTGCCTTTTCTATTACCGAGATGAGAAGGAGGAGGGTATTTTGGGAAGTATCCTGTTGCCTAGTTTTCAGATA 666
Query 1 ---------------------------------------------------------------ATGCGGACCTA 11
|||||||||||
Sbjct 667 GCCATGCTCACTGCTGAGGACCACATCAATCGCAAATATGCTTTTAAGGCAGCCCACCCAAACATGCGGACCTA 740
Query 12 TTATTTCTGCACTGATACAGGAAAGGAAATGGAGTTGTGGATGAAAGCCATGTTAGATGCTGCCCTAGTACAGA 85
||||||||||||.||||||||||||||.||||||.||||||||||.|||||||||||||||||.||.||.||||
Sbjct 741 TTATTTCTGCACCGATACAGGAAAGGAGATGGAGCTGTGGATGAAGGCCATGTTAGATGCTGCTCTGGTGCAGA 814
Query 86 CAGAACCTGTGAAAA------------------GAGTGGACAAGATTACATCTGAAAATGCACCAACTAAAGAA 141
||||||||||||||| |||||||||||||||||.||||.|.||||.||||.||||||
Sbjct 815 CAGAACCTGTGAAAAGAATTACCTTTAATTTCCGAGTGGACAAGATTACAACTGACAGTGCATCAACCAAAGAA 888
Query 142 ACCAATAACATTCCCAACCATAGAGTGCTAATTAAACCAGAGATCCAAAACAATCAAAAAAACAAGGAAATGAG 215
||||||||||||||||||||.|||||.||.||||.|||.|||.||||||||.||||.||.||.||||||||.||
Sbjct 889 ACCAATAACATTCCCAACCACAGAGTTCTCATTAGACCCGAGGTCCAAAACCATCAGAAGAATAAGGAAATCAG 962
Query 216 CAAAATTGAAGAAAAAAAGGCATTAGAAGCTGAAAAATATGGATTTCAGAAGGATGGTCAAGATAGACCCTTAA 289
|||||||||||||||||.|||.|||||||||||||.|||.||||||||||||||.||.|||||||||||.||||
Sbjct 963 CAAAATTGAAGAAAAAAGGGCCTTAGAAGCTGAAAGATACGGATTTCAGAAGGACGGGCAAGATAGACCATTAA 1036
Query 290 CAAAAATTAATAGTGTAAAGCTGAATTCTCTGCCATCTGAATATGAGAGTGGGTCAGCATGCCCTGCTCAGACT 363
||||||||||.|||||.|||.||||.||.||||.|||.||||||||.||.|||.|||..|||||..||||||.|
Sbjct 1037 CAAAAATTAACAGTGTGAAGTTGAACTCCCTGCTATCAGAATATGAAAGCGGGCCAGACTGCCCACCTCAGAAT 1110
Query 364 GTGCACTACAGACCAATCAACTTGAGCAGTTCAGAGAACAAAATAGTCAATGTTAGCCTGGCAGATCTTAGAGG 437
||.|||||||||||.|||||..|||..|||||.||...||||...||.|||||.|||.||||||||.|..|.||
Sbjct 1111 GTACACTACAGACCCATCAATGTGAATAGTTCTGACGGCAAAGCGGTGAATGTCAGCTTGGCAGATGTCCGGGG 1184
Query 438 TGGAAATCGCCCCAATACAGGGCCCTTATACACAGAGGCCGATCGAGTCATACAGAGAACAAATTCAATGCAGC 511
|||.|.||.|||.|||.||||||||.||..||||||||||||.||||||||.||||||||.|||||||||||.|
Sbjct 1185 TGGGAGTCACCCAAATGCAGGGCCCCTAGCCACAGAGGCCGACCGAGTCATTCAGAGAACGAATTCAATGCAAC 1258
Query 512 AGTTGGAACAGTGGATTAAAATCCAGAAGGGGAGGGGTCATGAAGAAGAAACCAGGGGAGTAATTTCTTACCAA 585
||.|.||.||||||||||||.|||||||.||..||||||.|||||||||..||||.||||||||||||||.|||
Sbjct 1259 AGCTAGAGCAGTGGATTAAAGTCCAGAAAGGACGGGGTCTTGAAGAAGAGCCCAGAGGAGTAATTTCTTATCAA 1332
Query 586 ACATTACCAAGAAATATGCCAAGTCACAGAGCCCAGATTATGGCCCGCTACCCTGAAGGTTATAGAACACTCCC 659
|||||.|||||||||||||||||.||||||||||||||..|||||||||.||||||||||||..|.||||||||
Sbjct 1333 ACATTGCCAAGAAATATGCCAAGCCACAGAGCCCAGATCCTGGCCCGCTGCCCTGAAGGTTACCGGACACTCCC 1406
Query 660 AAGAAACAGCAAGACAAGGCCTGAAAGTATCTGCAGTGTAACCCCTTCCACTCATGACAAGACATTAGGACCCG 733
.||||||||||||||.||.|||||.|||||||||||.||||||.||||...||||||.||||| |||.||.|
Sbjct 1407 GAGAAACAGCAAGACCAGACCTGAGAGTATCTGCAGCGTAACCTCTTCTGGTCATGAGAAGAC---AGGGCCGG 1477
Query 734 GAGCGGAGGAGAAACGGAGGTCCATGAGAGATGACACAATGTGGCAGCTCTACGAATGGCAGCAGCGTCAGTTT 807
||||.||.|||||.|||.|.|||||||||||||||||.|||||||||||.|||||.|||||||||||.||||||
Sbjct 1478 GAGCAGAAGAGAAGCGGCGATCCATGAGAGATGACACCATGTGGCAGCTGTACGAGTGGCAGCAGCGCCAGTTT 1551
Query 808 TATAACAAACAGAGCACCCTCCCTCGACACAGTACT--TTGAGTAGTCCCAAAACCATGGTAAATATTTCTGAC 879
||..||||.|||||||||||||||||.|||.| || .||||.|||||||||.|||||||..|..|.||||||
Sbjct 1552 TACCACAAGCAGAGCACCCTCCCTCGGCACGG--CTGCCTGAGCAGTCCCAAAGCCATGGTGCAGGTGTCTGAC 1623
Query 880 CAGACAATGCACTCTATTCCCACATCACCTTCCCACGGGTCAATAGCTGCTTATCAGGGATACTCCCCTCAACG 953
|||||.||||||||.||.|||||.|||||||||||.||||||..|||||||||.|||||.|.|||||||||.||
Sbjct 1624 CAGACGATGCACTCCATCCCCACGTCACCTTCCCATGGGTCAGCAGCTGCTTACCAGGGCTTCTCCCCTCAGCG 1697
Query 954 AACTTACAGATCGGAAGTGTCTTCACCAATTCAGAGAGGAGATGTGACAATAGACCGCAGACACAGGGCCCATC 1027
.||.|||||.||.||||||.|.||.||.||.|||||||||||||||||.|||||||||||.||||||.|.||||
Sbjct 1698 GACGTACAGGTCAGAAGTGACCTCGCCCATCCAGAGAGGAGATGTGACGATAGACCGCAGGCACAGGCCTCATC 1771
Query 1028 ACCCTAAGCATGTCTATGTGCCTGACAGAAGGTCAGTGCCAGCTGGCCTGACTTTACAGTCTGTTAGTCCCCAG 1101
|||||||||||||||||||..||||||||||||||.|||||||||||.|.|||||||||.||||||||||||||
Sbjct 1772 ACCCTAAGCATGTCTATGTAGCTGACAGAAGGTCAATGCCAGCTGGCTTAACTTTACAGGCTGTTAGTCCCCAG 1845
Query 1102 AGCCTCCAAGGGAAAACG------------------------------------CTGTCACAAGATGAAGGTAG 1139
|||||||||||.|.|||| |||||||||||||||.||||
Sbjct 1846 AGCCTCCAAGGCAGAACGTTCTTAAGACAGAAGAACAAGATAAGTCTCTATTGTCTGTCACAAGATGAATGTAG 1919
Query 1140 AGGCACATTATACAAATACAGACCTGAAGAAGTAGATATTGATGCCAAGTTAAGCCGATTATGTGAACAAGATA 1213
||||||||||||||||||||||||||||||||.||.||||||||||||.||||||.||||.||||||||.||||
Sbjct 1920 AGGCACATTATACAAATACAGACCTGAAGAAGCAGGTATTGATGCCAAATTAAGCAGATTGTGTGAACAGGATA 1993
Query 1214 AAGTGGTGCATGCTCTGGAAGAGAAACTTCAGCAACTCCACAAGGAGAAATACACGCTTGAGCAAGCTTTGCTA 1287
|||||||.|..||.|||||.|||||.||.|||||.||.|||||||||||||||||||||||||||||.|||||.
Sbjct 1994 AAGTGGTCCGAGCGCTGGAGGAGAAGCTGCAGCAGCTGCACAAGGAGAAATACACGCTTGAGCAAGCCTTGCTG 2067
Query 1288 TCAGCCAGCCAAGAGATAGAAATGCATGCAGATAACCCAGCAGCCATTCAGACAGTGGTGTTACAAAGGGATGA 1361
||||||||||||||||||||.|||.||||.|||||||||||.||||||||.||.||||||||.||.||||||||
Sbjct 2068 TCAGCCAGCCAAGAGATAGAGATGAATGCTGATAACCCAGCTGCCATTCAAACTGTGGTGTTGCAGAGGGATGA 2141
Query 1362 TTTACAAAATGGACTGCTTAGTACGTGTCGAGAACTTTCTCGAGCCACTGCCGAATTGGAACGAGCATGGAGAG 1435
..|.|||||.||||||||.||.||||||||.|||||.||.|||||||||||.||..||||||||||.|||||||
Sbjct 2142 CCTGCAAAACGGACTGCTGAGCACGTGTCGGGAACTCTCCCGAGCCACTGCTGAGCTGGAACGAGCCTGGAGAG 2215
Query 1436 AATATGATAAGTTAGAATACGATGTAACTGTTACCAGGAACCAGATGCAAGAGCAGCTGGATCACCTTGGTGAA 1509
|||||||.|||||.|||||.|||||.||||||||||||.||||||||||.|..|||||.||.|.||||||.|||
Sbjct 2216 AATATGACAAGTTGGAATATGATGTGACTGTTACCAGGGACCAGATGCAGGGTCAGCTCGACCGCCTTGGAGAA 2289
Query 1510 GTTCAGACGGAATCAGCAGGAATTCAGCGTGCACAGATTCAGAAAGAACTTTGGCGAATTCAGGATGTCATGGA 1583
||.||||..||.||.|||||||||||.||.|||||||||||.||.||.||.|||.|||||||.|||||||||||
Sbjct 2290 GTGCAGAGTGAGTCGGCAGGAATTCAACGGGCACAGATTCAAAAGGAGCTCTGGAGAATTCAAGATGTCATGGA 2363
Query 1584 AGGGCTGAGTAAACATAAGCAGCAAAGAGGTACTACAGAAA---TAGGTATGATAGGATCAAAGCCTTTCTCAA 1654
.|||.||||.|||||.||.|||||||||||..||.|||||| |||||.||..|||||||||||||||||||.
Sbjct 2364 GGGGTTGAGCAAACACAAACAGCAAAGAGGCTCTTCAGAAACAGTAGGTCTGGCAGGATCAAAGCCTTTCTCAT 2437
Query 1655 CAGTTAAGTACAA------------------------------------------------------------- 1667
|||||||||||||
Sbjct 2438 CAGTTAAGTACAAGAGCGAGGAAGAGGAAGTAGTCCCACCTCGGCCTCCACTTCCTCGGTCTTATGACTTTACA 2511
Query 1668 -------------------------------------------------------------------------- 1667
Sbjct 2512 GAGCAGCCTCCCATAATCCCCCCTCTGCCCAGTGATAGCAGCTCCTTGCTCTGTTATAGCAGGGGCCCCGTGCA 2585
Query 1668 ---------------------------------------------AAATGAG----------GGTCCAGATTAT 1686
||||| | ||||||||||||
Sbjct 2586 TCTGCCTGAAGACAAGAAGATTCATCAAGTTCAAGGATATCCAAGAAATG-GATCTCACTGTGGTCCAGATTAT 2658
Query 1687 AGACTCTACAAGAGTGAACCAGAGTTAACAACAGTGGCAGAAGTTGATGAATCTAATGGAGAAGAAAAATCAGA 1760
|||||||||||||||||.|||||||||||.||||||||||||||.|||||||||||.|||||||||||.|||||
Sbjct 2659 AGACTCTACAAGAGTGAGCCAGAGTTAACCACAGTGGCAGAAGTCGATGAATCTAACGGAGAAGAAAAGTCAGA 2732
Query 1761 ACCTGTTTCAGAGATAGAAACTTCAGTTGTTAAAGGTTCCCACTTTCCTGTTGGAGTAGTCCCTCCAAGAGCAA 1834
.||.|||||.||||.||||.||.||||.||||||||||||||.|||||.||.|| |||.||||..|||.|||
Sbjct 2733 GCCAGTTTCTGAGACAGAAGCTCCAGTCGTTAAAGGTTCCCATTTTCCAGTCGG---AGTTCCTCTGAGAACAA 2803
Query 1835 AATCACCAACACCCGAATCTTCGACAATAGCTTCCTATGTAACCTTGAGGAAAACTAAGAAGATGATGGATCTA 1908
|.|||||.||||||||.||.||.||.||||||||||||||.|||||||||||.||||||||||||.||||.|||
Sbjct 2804 AGTCACCCACACCCGAGTCCTCCACGATAGCTTCCTATGTGACCTTGAGGAAGACTAAGAAGATGGTGGAGCTA 2877
Query 1909 AGAACGGAAAGACCAAGAAGTGCAGTGGAACAGCTCTGTTTGGCTGAAAGTACTCGACCAAGGATGACTGTGGA 1982
|||||||||||||||||||||||.|||||.|||||.|||.|||||||.|||.|||||||.||.|||||||||||
Sbjct 2878 AGAACGGAAAGACCAAGAAGTGCCGTGGAGCAGCTGTGTCTGGCTGAGAGTGCTCGACCTAGAATGACTGTGGA 2951
Query 1983 AGAGCAAATGGAAAGAATAAGAAGACATCAACAAGCGTGCCTGAGGGAGAAGAAAAAAGGGTTAAATGTTATCG 2056
||||||..|.||.||.||.||.|||||.||.||.||.|||||||||||||||||.||.|||.|.|.|||..|||
Sbjct 2952 AGAGCAGCTAGAGAGGATCAGGAGACACCAGCAGGCCTGCCTGAGGGAGAAGAAGAAGGGGCTGAGTGTCCTCG 3025
Query 2057 GTGCTTCAGACCAGTCACCCTTACAAAGCCCTTCAAATTTAAGGGATAATCCATTTAGGACTACTCAGACTCGA 2130
|||||||.|| |||.|||.|..|.|||||.|.||||.|.|||..|||||||||||.|
Sbjct 3026 GTGCTTCCGA------------------CCCGTCAGACGTGAGGGACAGTCCACTCAGGCTTACTCAGACTCTA 3081
Query 2131 AGGAGGGATGA------TAAGGAACTGGACACTG-CCATTAGAGAAAATGATGTAAAGCCAGACCATGAAACTC 2197
||||||||||| ||||||.||.|||||.| ||| .||||||||||||||||||||||||.|.||.||||
Sbjct 3082 AGGAGGGATGATAACGTTAAGGAGCTAGACACCGTCCA-CAGAGAAAATGATGTAAAGCCAGACTACGAGACTC 3154
Query 2198 CTGCA--ACAGAAATTGT--TCAACTAAAAGAAACCGAACCCCAAAATGTGGACTTCAGCAAAGAGTTAAAAAA 2267
|.||| |||| ||| |||.|||.||||..|.||||||||.||||..|||.||.|||.|.||.||||||
Sbjct 3155 CAGCAGCACAG----TGTGCTCACCTAGAAGACGCTGAACCCCAGAATGCAGACATCGGCAGAAAGCTAAAAA- 3223
Query 2268 AACTGAAAACATTTCATATGAAATGCTTTTTGAACCTGAGCCAAATGGAGTAAATTCTGTGGAAATGATGGATA 2341
.||.|||||||||||....||||||.|||||||||.|...|||||.||||.|||.|||.|
Sbjct 3224 --------------GATCTGAAATGCTTTACACACCTGAACCAAATGGAATGGCTTCTGAGGAAGTGACGGAGA 3283
Query 2342 AAGAAAGAAACAAAGACAAAATGCCTGAGGATGTTACATTCAGCCCTCAAGATGAAAC-------ACAGACCGC 2408
|.||||||.|.|||||..|..|||.||..||||...|||.|||||||||.||.||.|| |||||.|
Sbjct 3284 AGGAAAGACAGAAAGAGCAGGTGCATGCCGATGGGTCATGCAGCCCTCAGGAAGAGACGGCCATGACAGAGC-- 3355
Query 2409 AAATCATAAACCAGAAGAGCATCCTGAAGAAAATACAAAGAACAGTGTTGACGAACAGGAAGAAACTGTTATTT 2482
||||.| ..||||..|..|||||.||| .||.|| |||.||.|.||..|||||||||||.||..||
Sbjct 3356 --ATCAGA---TGGAAGGCCCCCCTGAGGAA---GCAGAG---AGTCTTCATGAGGAGGAAGAAACTCTTGCTT 3418
Query 2483 CTTACGAATCAACTCCTGAGGTTTCTAGAGGA-AATCAAACAATGGCAGTGAAAAGTCTGTCCCCATCTCCTGA 2555
|.|..||..||.||||||||.||.|||| ||| ||||||||.| ||||||.||||||||||||.||||||||
Sbjct 3419 CCTGTGAGCCAGCTCCTGAGATTCCTAG-GGAGAATCAAACCA---CAGTGAGAAGTCTGTCCCCGTCTCCTGA 3488
Query 2556 GTCCT---CGGCATCGCCAGTTCCATCCACTCAGCCGCAGCTCACAGAAGGATCACATTTCATGTGTGTG 2622
.|||| ||||| .|||.|||..||||||..||.|||||||..||||||||.|||||||||||||||
Sbjct 3489 CTCCTCCACGGCA---GCAGATCCGCCCACTCCTCCACAGCTCAGGGAAGGATCGCATTTCATGTGTGTG 3555
