Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12044
- Subject:
- XM_006506875.2
- Aligned Length:
- 3549
- Identities:
- 2151
- Gaps:
- 993
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGGCCGACCTGAACCTGGAGTGGATCTGCTCGCTGCCGCGCTCCTGGACGTACGGGATCACTAGGGGCGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCGCGTCTTCTTCATCAACGAGGAGGCCAAGAGCACCACCTGGCTACACCCGGTCACCGGCGAGGCCGTGGTCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCGGGCACCGGCGGCAGAGCACAGATTTGCCCACTGGCTGGGAAGAAGCATATACGTTCGAAGGTGCAAGATAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TATATAAACCACAATGAAAGGAAAGTGACCTGCAAGCATCCGGTTACAGGACAGCCATCCCAAGACAACTGTAT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTTTGTTGTGAATGATCAGACTGTTGCAACCATGACGTCCGAAGACAAGAAGGAACGACCCATAAGTATGATAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATGAAGCTTCCAATTACAACATGGCTTCAGATTATGCAGTGCATCCCATGAGCCCTGTGGGCAGGACCTCGCGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCTCCAAAAAGGTTCATAATTTTGGGAAAAGGTCCAATTCAATTAAAAGGAACCCTAATGCACCTGTGGTCCG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCGTGGCTGGCTGTATAAGCAGGACAGCACCGGCATGAAGCTGTGGAAGAAGCGCTGGTTTGTGCTCTCTGACC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTTGCCTTTTCTATTACCGAGATGAGAAGGAGGAGGGTATTTTGGGAAGTATCCTGTTGCCTAGTTTTCAGATA 666
Query 1 ---------------------------------------------------------------ATGCGGACCTA 11
|||||||||||
Sbjct 667 GCCATGCTCACTGCTGAGGACCACATCAATCGCAAATATGCTTTTAAGGCAGCCCACCCAAACATGCGGACCTA 740
Query 12 TTATTTCTGCACTGATACAGGAAAGGAAATGGAGTTGTGGATGAAAGCCATGTTAGATGCTGCCCTAGTACAGA 85
||||||||||||.||||||||||||||.||||||.||||||||||.|||||||||||||||||.||.||.||||
Sbjct 741 TTATTTCTGCACCGATACAGGAAAGGAGATGGAGCTGTGGATGAAGGCCATGTTAGATGCTGCTCTGGTGCAGA 814
Query 86 CAGAACCTGTGAAAAGAGTGGACAAGATTACATCTGAAAATGCACCAACTAAAGAAACCAATAACATTCCCAAC 159
||||||||||||||||||||||||||||||||.||||.|.||||.||||.||||||||||||||||||||||||
Sbjct 815 CAGAACCTGTGAAAAGAGTGGACAAGATTACAACTGACAGTGCATCAACCAAAGAAACCAATAACATTCCCAAC 888
Query 160 CATAGAGTGCTAATTAAACCAGAGATCCAAAACAATCAAAAAAACAAGGAAATGAGCAAAATTGAAGAAAAAAA 233
||.|||||.||.||||.|||.|||.||||||||.||||.||.||.||||||||.|||||||||||||||||||.
Sbjct 889 CACAGAGTTCTCATTAGACCCGAGGTCCAAAACCATCAGAAGAATAAGGAAATCAGCAAAATTGAAGAAAAAAG 962
Query 234 GGCATTAGAAGCTGAAAAATATGGATTTCAGAAGGATGGTCAAGATAGACCCTTAACAAAAATTAATAGTGTAA 307
|||.|||||||||||||.|||.||||||||||||||.||.|||||||||||.||||||||||||||.|||||.|
Sbjct 963 GGCCTTAGAAGCTGAAAGATACGGATTTCAGAAGGACGGGCAAGATAGACCATTAACAAAAATTAACAGTGTGA 1036
Query 308 AGCTGAATTCTCTGCCATCTGAATATGAGAGTGGGTCAGCATGCCCTGCTCAGACTGTGCACTACAGACCAATC 381
||.||||.||.||||.|||.||||||||.||.|||.|||..|||||..||||||.|||.|||||||||||.|||
Sbjct 1037 AGTTGAACTCCCTGCTATCAGAATATGAAAGCGGGCCAGACTGCCCACCTCAGAATGTACACTACAGACCCATC 1110
Query 382 AACTTGAGCAGTTCAGAGAACAAAATAGTCAATGTTAGCCTGGCAGATCTTAGAGGTGGAAATCGCCCCAATAC 455
||..|||..|||||.||...||||...||.|||||.|||.||||||||.|..|.|||||.|.||.|||.|||.|
Sbjct 1111 AATGTGAATAGTTCTGACGGCAAAGCGGTGAATGTCAGCTTGGCAGATGTCCGGGGTGGGAGTCACCCAAATGC 1184
Query 456 AGGGCCCTTATACACAGAGGCCGATCGAGTCATACAGAGAACAAATTCAATGCAGCAGTTGGAACAGTGGATTA 529
|||||||.||..||||||||||||.||||||||.||||||||.|||||||||||.|||.|.||.||||||||||
Sbjct 1185 AGGGCCCCTAGCCACAGAGGCCGACCGAGTCATTCAGAGAACGAATTCAATGCAACAGCTAGAGCAGTGGATTA 1258
Query 530 AAATCCAGAAGGGGAGGGGTCATGAAGAAGAAACCAGGGGAGTAATTTCTTACCAAACATTACCAAGAAATATG 603
||.|||||||.||..||||||.|||||||||..||||.||||||||||||||.||||||||.||||||||||||
Sbjct 1259 AAGTCCAGAAAGGACGGGGTCTTGAAGAAGAGCCCAGAGGAGTAATTTCTTATCAAACATTGCCAAGAAATATG 1332
Query 604 CCAAGTCACAGAGCCCAGATTATGGCCCGCTACCCTGAAGGTTATAGAACACTCCCAAGAAACAGCAAGACAAG 677
|||||.||||||||||||||..|||||||||.||||||||||||..|.||||||||.||||||||||||||.||
Sbjct 1333 CCAAGCCACAGAGCCCAGATCCTGGCCCGCTGCCCTGAAGGTTACCGGACACTCCCGAGAAACAGCAAGACCAG 1406
Query 678 GCCTGAAAGTATCTGCAGTGTAACCCCTTCCACTCATGACAAGACATTAGGACCCGGAGCGGAGGAGAAACGGA 751
.|||||.|||||||||||.||||||.||||...||||||.||||| |||.||.|||||.||.|||||.|||.
Sbjct 1407 ACCTGAGAGTATCTGCAGCGTAACCTCTTCTGGTCATGAGAAGAC---AGGGCCGGGAGCAGAAGAGAAGCGGC 1477
Query 752 GGTCCATGAGAGATGACACAATGTGGCAGCTCTACGAATGGCAGCAGCGTCAGTTTTATAACAAACAGAGCACC 825
|.|||||||||||||||||.|||||||||||.|||||.|||||||||||.||||||||..||||.|||||||||
Sbjct 1478 GATCCATGAGAGATGACACCATGTGGCAGCTGTACGAGTGGCAGCAGCGCCAGTTTTACCACAAGCAGAGCACC 1551
Query 826 CTCCCTCGACACAGTACT--TTGAGTAGTCCCAAAACCATGGTAAATATTTCTGACCAGACAATGCACTCTATT 897
||||||||.|||.| || .||||.|||||||||.|||||||..|..|.|||||||||||.||||||||.||.
Sbjct 1552 CTCCCTCGGCACGG--CTGCCTGAGCAGTCCCAAAGCCATGGTGCAGGTGTCTGACCAGACGATGCACTCCATC 1623
Query 898 CCCACATCACCTTCCCACGGGTCAATAGCTGCTTATCAGGGATACTCCCCTCAACGAACTTACAGATCGGAAGT 971
|||||.|||||||||||.||||||..|||||||||.|||||.|.|||||||||.||.||.|||||.||.|||||
Sbjct 1624 CCCACGTCACCTTCCCATGGGTCAGCAGCTGCTTACCAGGGCTTCTCCCCTCAGCGGACGTACAGGTCAGAAGT 1697
Query 972 GTCTTCACCAATTCAGAGAGGAGATGTGACAATAGACCGCAGACACAGGGCCCATCACCCTAAGCATGTCTATG 1045
|.|.||.||.||.|||||||||||||||||.|||||||||||.||||||.|.||||||||||||||||||||||
Sbjct 1698 GACCTCGCCCATCCAGAGAGGAGATGTGACGATAGACCGCAGGCACAGGCCTCATCACCCTAAGCATGTCTATG 1771
Query 1046 TGCCTGACAGAAGGTCAGTGCCAGCTGGCCTGACTTTACAGTCTGTTAGTCCCCAGAGCCTCCAAGGGAAAAC- 1118
|..||||||||||||||.|||||||||||.|.|||||||||.|||||||||||||||||||||||||.|.|||
Sbjct 1772 TAGCTGACAGAAGGTCAATGCCAGCTGGCTTAACTTTACAGGCTGTTAGTCCCCAGAGCCTCCAAGGCAGAACG 1845
Query 1119 -------------------------------------------------------------------------- 1118
Sbjct 1846 CCAGAGGAGCTCACACTGCTGCTAATAAAGCTGAGACGGCAGCAGGCAGAGCTGAGTAGTGTCCGGGAGCACAC 1919
Query 1119 -------------------------------------------------------------------------- 1118
Sbjct 1920 CTTAGCACAGCTCATGCAGCTGAAACTTGAGGCCCACAGCCCAAAGAATGAGATTCTTTCACATCATCTCCAAA 1993
Query 1119 -------------------------GCTGTCACAAGATGAAGGTAGAGGCACATTATACAAATACAGACCTGAA 1167
||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct 1994 GGAACACCATATATTTGGATCATCAGCTGTCACAAGATGAATGTAGAGGCACATTATACAAATACAGACCTGAA 2067
Query 1168 GAAGTAGATATTGATGCCAAGTTAAGCCGATTATGTGAACAAGATAAAGTGGTGCATGCTCTGGAAGAGAAACT 1241
||||.||.||||||||||||.||||||.||||.||||||||.|||||||||||.|..||.|||||.|||||.||
Sbjct 2068 GAAGCAGGTATTGATGCCAAATTAAGCAGATTGTGTGAACAGGATAAAGTGGTCCGAGCGCTGGAGGAGAAGCT 2141
Query 1242 TCAGCAACTCCACAAGGAGAAATACACGCTTGAGCAAGCTTTGCTATCAGCCAGCCAAGAGATAGAAATGCATG 1315
.|||||.||.|||||||||||||||||||||||||||||.|||||.||||||||||||||||||||.|||.|||
Sbjct 2142 GCAGCAGCTGCACAAGGAGAAATACACGCTTGAGCAAGCCTTGCTGTCAGCCAGCCAAGAGATAGAGATGAATG 2215
Query 1316 CAGATAACCCAGCAGCCATTCAGACAGTGGTGTTACAAAGGGATGATTTACAAAATGGACTGCTTAGTACGTGT 1389
|.|||||||||||.||||||||.||.||||||||.||.||||||||..|.|||||.||||||||.||.||||||
Sbjct 2216 CTGATAACCCAGCTGCCATTCAAACTGTGGTGTTGCAGAGGGATGACCTGCAAAACGGACTGCTGAGCACGTGT 2289
Query 1390 CGAGAACTTTCTCGAGCCACTGCCGAATTGGAACGAGCATGGAGAGAATATGATAAGTTAGAATACGATGTAAC 1463
||.|||||.||.|||||||||||.||..||||||||||.||||||||||||||.|||||.|||||.|||||.||
Sbjct 2290 CGGGAACTCTCCCGAGCCACTGCTGAGCTGGAACGAGCCTGGAGAGAATATGACAAGTTGGAATATGATGTGAC 2363
Query 1464 TGTTACCAGGAACCAGATGCAAGAGCAGCTGGATCACCTTGGTGAAGTTCAGACGGAATCAGCAGGAATTCAGC 1537
||||||||||.||||||||||.|..|||||.||.|.||||||.|||||.||||..||.||.|||||||||||.|
Sbjct 2364 TGTTACCAGGGACCAGATGCAGGGTCAGCTCGACCGCCTTGGAGAAGTGCAGAGTGAGTCGGCAGGAATTCAAC 2437
Query 1538 GTGCACAGATTCAGAAAGAACTTTGGCGAATTCAGGATGTCATGGAAGGGCTGAGTAAACATAAGCAGCAAAGA 1611
|.|||||||||||.||.||.||.|||.|||||||.|||||||||||.|||.||||.|||||.||.|||||||||
Sbjct 2438 GGGCACAGATTCAAAAGGAGCTCTGGAGAATTCAAGATGTCATGGAGGGGTTGAGCAAACACAAACAGCAAAGA 2511
Query 1612 GGTACTACAGAAATAGGTATGATAGGATCAAAGCCTTTCTCAACAGTTAAGTACAAAAATGAGGGTCCAGATTA 1685
||..||.||||||.||||.||..|||||||||||||||||||.|||||||||||||.|..||||||||||||||
Sbjct 2512 GGCTCTTCAGAAACAGGTCTGGCAGGATCAAAGCCTTTCTCATCAGTTAAGTACAAGAGCGAGGGTCCAGATTA 2585
Query 1686 TAGACTCTACAAGAGTGAACCAGAGTTAACAACAGTGGCAGAAGTTGATGAATCTAATGGAGAAGAAAAATCAG 1759
||||||||||||||||||.|||||||||||.||||||||||||||.|||||||||||.|||||||||||.||||
Sbjct 2586 TAGACTCTACAAGAGTGAGCCAGAGTTAACCACAGTGGCAGAAGTCGATGAATCTAACGGAGAAGAAAAGTCAG 2659
Query 1760 AACCTGTTTCAGAGATAGAAACTTCAGTTGTTAAAGGTTCCCACTTTCCTGTTGGAGTAGTCCCTCCAAGAGCA 1833
|.||.|||||.||||.||||.||.||||.||||||||||||||.|||||.||.|| |||.||||..|||.||
Sbjct 2660 AGCCAGTTTCTGAGACAGAAGCTCCAGTCGTTAAAGGTTCCCATTTTCCAGTCGG---AGTTCCTCTGAGAACA 2730
Query 1834 AAATCACCAACACCCGAATCTTCGACAATAGCTTCCTATGTAACCTTGAGGAAAACTAAGAAGATGATGGATCT 1907
||.|||||.||||||||.||.||.||.||||||||||||||.|||||||||||.||||||||||||.||||.||
Sbjct 2731 AAGTCACCCACACCCGAGTCCTCCACGATAGCTTCCTATGTGACCTTGAGGAAGACTAAGAAGATGGTGGAGCT 2804
Query 1908 AAGAACGGAAAGACCAAGAAGTGCAGTGGAACAGCTCTGTTTGGCTGAAAGTACTCGACCAAGGATGACTGTGG 1981
||||||||||||||||||||||||.|||||.|||||.|||.|||||||.|||.|||||||.||.||||||||||
Sbjct 2805 AAGAACGGAAAGACCAAGAAGTGCCGTGGAGCAGCTGTGTCTGGCTGAGAGTGCTCGACCTAGAATGACTGTGG 2878
Query 1982 AAGAGCAAATGGAAAGAATAAGAAGACATCAACAAGCGTGCCTGAGGGAGAAGAAAAAAGGGTTAAATGTTATC 2055
|||||||..|.||.||.||.||.|||||.||.||.||.|||||||||||||||||.||.|||.|.|.|||..||
Sbjct 2879 AAGAGCAGCTAGAGAGGATCAGGAGACACCAGCAGGCCTGCCTGAGGGAGAAGAAGAAGGGGCTGAGTGTCCTC 2952
Query 2056 GGTGCTTCAGACCAGTCACCCTTACAAAGCCCTTCAAATTTAAGGGATAATCCATTTAGGACTACTCAGACTCG 2129
||||||||.|| |||.|||.|..|.|||||.|.||||.|.|||..|||||||||||.
Sbjct 2953 GGTGCTTCCGA------------------CCCGTCAGACGTGAGGGACAGTCCACTCAGGCTTACTCAGACTCT 3008
Query 2130 AAGGAGGGATGA------TAAGGAACTGGACACTG-CCATTAGAGAAAATGATGTAAAGCCAGACCATGAAACT 2196
|||||||||||| ||||||.||.|||||.| ||| .||||||||||||||||||||||||.|.||.|||
Sbjct 3009 AAGGAGGGATGATAACGTTAAGGAGCTAGACACCGTCCA-CAGAGAAAATGATGTAAAGCCAGACTACGAGACT 3081
Query 2197 CCTGCA--ACAGAAATTGT--TCAACTAAAAGAAACCGAACCCCAAAATGTGGACTTCAGCAAAGAGTTAAAAA 2266
||.||| |||| ||| |||.|||.||||..|.||||||||.||||..|||.||.|||.|.||.||||||
Sbjct 3082 CCAGCAGCACAG----TGTGCTCACCTAGAAGACGCTGAACCCCAGAATGCAGACATCGGCAGAAAGCTAAAAA 3151
Query 2267 AAACTGAAAACATTTCATATGAAATGCTTTTTGAACCTGAGCCAAATGGAGTAAATTCTGTGGAAATGATGGAT 2340
.||.|||||||||||....||||||.|||||||||.|...|||||.||||.|||.|||.
Sbjct 3152 ---------------GATCTGAAATGCTTTACACACCTGAACCAAATGGAATGGCTTCTGAGGAAGTGACGGAG 3210
Query 2341 AAAGAAAGAAACAAAGACAAAATGCCTGAGGATGTTACATTCAGCCCTCAAGATGAAAC-------ACAGACCG 2407
||.||||||.|.|||||..|..|||.||..||||...|||.|||||||||.||.||.|| |||||.|
Sbjct 3211 AAGGAAAGACAGAAAGAGCAGGTGCATGCCGATGGGTCATGCAGCCCTCAGGAAGAGACGGCCATGACAGAGC- 3283
Query 2408 CAAATCATAAACCAGAAGAGCATCCTGAAGAAAATACAAAGAACAGTGTTGACGAACAGGAAGAAACTGTTATT 2481
||||.| ..||||..|..|||||.||| .||.|| |||.||.|.||..|||||||||||.||..|
Sbjct 3284 ---ATCAGA---TGGAAGGCCCCCCTGAGGAA---GCAGAG---AGTCTTCATGAGGAGGAAGAAACTCTTGCT 3345
Query 2482 TCTTACGAATCAACTCCTGAGGTTTCTAGAGGA-AATCAAACAATGGCAGTGAAAAGTCTGTCCCCATCTCCTG 2554
||.|..||..||.||||||||.||.|||| ||| ||||||||.| ||||||.||||||||||||.|||||||
Sbjct 3346 TCCTGTGAGCCAGCTCCTGAGATTCCTAG-GGAGAATCAAACCA---CAGTGAGAAGTCTGTCCCCGTCTCCTG 3415
Query 2555 AGTCCT---CGGCATCGCCAGTTCCATCCACTCAGCCGCAGCTCACAGAAGGATCACATTTCATGTGTGTG 2622
|.|||| ||||| .|||.|||..||||||..||.|||||||..||||||||.|||||||||||||||
Sbjct 3416 ACTCCTCCACGGCA---GCAGATCCGCCCACTCCTCCACAGCTCAGGGAAGGATCGCATTTCATGTGTGTG 3483
