Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12044
- Subject:
- XM_006506877.3
- Aligned Length:
- 3550
- Identities:
- 2154
- Gaps:
- 995
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGACGTCCGAAGACAAGAAGGAACGACCCATAAGTATGATAAATGAAGCTTCCAATTACAACATGGCTTCAGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTATGCAGTGCATCCCATGAGCCCTGTGGGCAGGACCTCGCGGGCCTCCAAAAAGGTTCATAATTTTGGGAAAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGTCCAATTCAATTAAAAGGAACCCTAATGCACCTGTGGTCCGGCGTGGCTGGCTGTATAAGCAGGACAGCACC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGCATGAAGCTGTGGAAGAAGCGCTGGTTTGTGCTCTCTGACCTTTGCCTTTTCTATTACCGAGATGAGAAGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGAGGGTATTTTGGGAAGTATCCTGTTGCCTAGTTTTCAGATAGCCATGCTCACTGCTGAGGACCACATCAATC 370
Query 1 --------------------------------ATGCGGACCTATTATTTCTGCACTGATACAGGAAAGGAAATG 42
|||||||||||||||||||||||.||||||||||||||.|||
Sbjct 371 GCAAATATGCTTTTAAGGCAGCCCACCCAAACATGCGGACCTATTATTTCTGCACCGATACAGGAAAGGAGATG 444
Query 43 GAGTTGTGGATGAAAGCCATGTTAGATGCTGCCCTAGTACAGACAGAACCTGTGAAAA---------------- 100
|||.||||||||||.|||||||||||||||||.||.||.|||||||||||||||||||
Sbjct 445 GAGCTGTGGATGAAGGCCATGTTAGATGCTGCTCTGGTGCAGACAGAACCTGTGAAAAGAATTACCTTTAATTT 518
Query 101 --GAGTGGACAAGATTACATCTGAAAATGCACCAACTAAAGAAACCAATAACATTCCCAACCATAGAGTGCTAA 172
|||||||||||||||||.||||.|.||||.||||.||||||||||||||||||||||||||.|||||.||.|
Sbjct 519 CCGAGTGGACAAGATTACAACTGACAGTGCATCAACCAAAGAAACCAATAACATTCCCAACCACAGAGTTCTCA 592
Query 173 TTAAACCAGAGATCCAAAACAATCAAAAAAACAAGGAAATGAGCAAAATTGAAGAAAAAAAGGCATTAGAAGCT 246
|||.|||.|||.||||||||.||||.||.||.||||||||.|||||||||||||||||||.|||.|||||||||
Sbjct 593 TTAGACCCGAGGTCCAAAACCATCAGAAGAATAAGGAAATCAGCAAAATTGAAGAAAAAAGGGCCTTAGAAGCT 666
Query 247 GAAAAATATGGATTTCAGAAGGATGGTCAAGATAGACCCTTAACAAAAATTAATAGTGTAAAGCTGAATTCTCT 320
||||.|||.||||||||||||||.||.|||||||||||.||||||||||||||.|||||.|||.||||.||.||
Sbjct 667 GAAAGATACGGATTTCAGAAGGACGGGCAAGATAGACCATTAACAAAAATTAACAGTGTGAAGTTGAACTCCCT 740
Query 321 GCCATCTGAATATGAGAGTGGGTCAGCATGCCCTGCTCAGACTGTGCACTACAGACCAATCAACTTGAGCAGTT 394
||.|||.||||||||.||.|||.|||..|||||..||||||.|||.|||||||||||.|||||..|||..||||
Sbjct 741 GCTATCAGAATATGAAAGCGGGCCAGACTGCCCACCTCAGAATGTACACTACAGACCCATCAATGTGAATAGTT 814
Query 395 CAGAGAACAAAATAGTCAATGTTAGCCTGGCAGATCTTAGAGGTGGAAATCGCCCCAATACAGGGCCCTTATAC 468
|.||...||||...||.|||||.|||.||||||||.|..|.|||||.|.||.|||.|||.||||||||.||..|
Sbjct 815 CTGACGGCAAAGCGGTGAATGTCAGCTTGGCAGATGTCCGGGGTGGGAGTCACCCAAATGCAGGGCCCCTAGCC 888
Query 469 ACAGAGGCCGATCGAGTCATACAGAGAACAAATTCAATGCAGCAGTTGGAACAGTGGATTAAAATCCAGAAGGG 542
|||||||||||.||||||||.||||||||.|||||||||||.|||.|.||.||||||||||||.|||||||.||
Sbjct 889 ACAGAGGCCGACCGAGTCATTCAGAGAACGAATTCAATGCAACAGCTAGAGCAGTGGATTAAAGTCCAGAAAGG 962
Query 543 GAGGGGTCATGAAGAAGAAACCAGGGGAGTAATTTCTTACCAAACATTACCAAGAAATATGCCAAGTCACAGAG 616
..||||||.|||||||||..||||.||||||||||||||.||||||||.|||||||||||||||||.|||||||
Sbjct 963 ACGGGGTCTTGAAGAAGAGCCCAGAGGAGTAATTTCTTATCAAACATTGCCAAGAAATATGCCAAGCCACAGAG 1036
Query 617 CCCAGATTATGGCCCGCTACCCTGAAGGTTATAGAACACTCCCAAGAAACAGCAAGACAAGGCCTGAAAGTATC 690
|||||||..|||||||||.||||||||||||..|.||||||||.||||||||||||||.||.|||||.||||||
Sbjct 1037 CCCAGATCCTGGCCCGCTGCCCTGAAGGTTACCGGACACTCCCGAGAAACAGCAAGACCAGACCTGAGAGTATC 1110
Query 691 TGCAGTGTAACCCCTTCCACTCATGACAAGACATTAGGACCCGGAGCGGAGGAGAAACGGAGGTCCATGAGAGA 764
|||||.||||||.||||...||||||.||||| |||.||.|||||.||.|||||.|||.|.|||||||||||
Sbjct 1111 TGCAGCGTAACCTCTTCTGGTCATGAGAAGAC---AGGGCCGGGAGCAGAAGAGAAGCGGCGATCCATGAGAGA 1181
Query 765 TGACACAATGTGGCAGCTCTACGAATGGCAGCAGCGTCAGTTTTATAACAAACAGAGCACCCTCCCTCGACACA 838
||||||.|||||||||||.|||||.|||||||||||.||||||||..||||.|||||||||||||||||.|||.
Sbjct 1182 TGACACCATGTGGCAGCTGTACGAGTGGCAGCAGCGCCAGTTTTACCACAAGCAGAGCACCCTCCCTCGGCACG 1255
Query 839 GTACT--TTGAGTAGTCCCAAAACCATGGTAAATATTTCTGACCAGACAATGCACTCTATTCCCACATCACCTT 910
| || .||||.|||||||||.|||||||..|..|.|||||||||||.||||||||.||.|||||.|||||||
Sbjct 1256 G--CTGCCTGAGCAGTCCCAAAGCCATGGTGCAGGTGTCTGACCAGACGATGCACTCCATCCCCACGTCACCTT 1327
Query 911 CCCACGGGTCAATAGCTGCTTATCAGGGATACTCCCCTCAACGAACTTACAGATCGGAAGTGTCTTCACCAATT 984
||||.||||||..|||||||||.|||||.|.|||||||||.||.||.|||||.||.||||||.|.||.||.||.
Sbjct 1328 CCCATGGGTCAGCAGCTGCTTACCAGGGCTTCTCCCCTCAGCGGACGTACAGGTCAGAAGTGACCTCGCCCATC 1401
Query 985 CAGAGAGGAGATGTGACAATAGACCGCAGACACAGGGCCCATCACCCTAAGCATGTCTATGTGCCTGACAGAAG 1058
|||||||||||||||||.|||||||||||.||||||.|.|||||||||||||||||||||||..||||||||||
Sbjct 1402 CAGAGAGGAGATGTGACGATAGACCGCAGGCACAGGCCTCATCACCCTAAGCATGTCTATGTAGCTGACAGAAG 1475
Query 1059 GTCAGTGCCAGCTGGCCTGACTTTACAGTCTGTTAGTCCCCAGAGCCTCCAAGGGAAAACG------------- 1119
||||.|||||||||||.|.|||||||||.|||||||||||||||||||||||||.|.||||
Sbjct 1476 GTCAATGCCAGCTGGCTTAACTTTACAGGCTGTTAGTCCCCAGAGCCTCCAAGGCAGAACGCCAGAGGAGCTCA 1549
Query 1120 -------------------------------------------------------------------------- 1119
Sbjct 1550 CACTGCTGCTAATAAAGCTGAGACGGCAGCAGGCAGAGCTGAGTAGTGTCCGGGAGCACACCTTAGCACAGCTC 1623
Query 1120 -------------------------------------------------------------------------- 1119
Sbjct 1624 ATGCAGCTGAAACTTGAGGCCCACAGCCCAAAGAATGAGATTCTTTCACATCATCTCCAAAGGAACACCATATA 1697
Query 1120 -------------------------------------------------------------------------- 1119
Sbjct 1698 TTTGGATCATCAGATGAAAGAAAATGAACCTATTATCACCATGGTTCACACAATGATTGAGAACTCGGCGCTAA 1771
Query 1120 --------------------------------------------------------CTGTCACAAGATGAAGGT 1137
|||||||||||||||.||
Sbjct 1772 GACCACAACTGTACCAACAATTCTTAAGACAGAAGAACAAGATAAGTCTCTATTGTCTGTCACAAGATGAATGT 1845
Query 1138 AGAGGCACATTATACAAATACAGACCTGAAGAAGTAGATATTGATGCCAAGTTAAGCCGATTATGTGAACAAGA 1211
||||||||||||||||||||||||||||||||||.||.||||||||||||.||||||.||||.||||||||.||
Sbjct 1846 AGAGGCACATTATACAAATACAGACCTGAAGAAGCAGGTATTGATGCCAAATTAAGCAGATTGTGTGAACAGGA 1919
Query 1212 TAAAGTGGTGCATGCTCTGGAAGAGAAACTTCAGCAACTCCACAAGGAGAAATACACGCTTGAGCAAGCTTTGC 1285
|||||||||.|..||.|||||.|||||.||.|||||.||.|||||||||||||||||||||||||||||.||||
Sbjct 1920 TAAAGTGGTCCGAGCGCTGGAGGAGAAGCTGCAGCAGCTGCACAAGGAGAAATACACGCTTGAGCAAGCCTTGC 1993
Query 1286 TATCAGCCAGCCAAGAGATAGAAATGCATGCAGATAACCCAGCAGCCATTCAGACAGTGGTGTTACAAAGGGAT 1359
|.||||||||||||||||||||.|||.||||.|||||||||||.||||||||.||.||||||||.||.||||||
Sbjct 1994 TGTCAGCCAGCCAAGAGATAGAGATGAATGCTGATAACCCAGCTGCCATTCAAACTGTGGTGTTGCAGAGGGAT 2067
Query 1360 GATTTACAAAATGGACTGCTTAGTACGTGTCGAGAACTTTCTCGAGCCACTGCCGAATTGGAACGAGCATGGAG 1433
||..|.|||||.||||||||.||.||||||||.|||||.||.|||||||||||.||..||||||||||.|||||
Sbjct 2068 GACCTGCAAAACGGACTGCTGAGCACGTGTCGGGAACTCTCCCGAGCCACTGCTGAGCTGGAACGAGCCTGGAG 2141
Query 1434 AGAATATGATAAGTTAGAATACGATGTAACTGTTACCAGGAACCAGATGCAAGAGCAGCTGGATCACCTTGGTG 1507
|||||||||.|||||.|||||.|||||.||||||||||||.||||||||||.|..|||||.||.|.||||||.|
Sbjct 2142 AGAATATGACAAGTTGGAATATGATGTGACTGTTACCAGGGACCAGATGCAGGGTCAGCTCGACCGCCTTGGAG 2215
Query 1508 AAGTTCAGACGGAATCAGCAGGAATTCAGCGTGCACAGATTCAGAAAGAACTTTGGCGAATTCAGGATGTCATG 1581
||||.||||..||.||.|||||||||||.||.|||||||||||.||.||.||.|||.|||||||.|||||||||
Sbjct 2216 AAGTGCAGAGTGAGTCGGCAGGAATTCAACGGGCACAGATTCAAAAGGAGCTCTGGAGAATTCAAGATGTCATG 2289
Query 1582 GAAGGGCTGAGTAAACATAAGCAGCAAAGAGGTACTACAGAAA---TAGGTATGATAGGATCAAAGCCTTTCTC 1652
||.|||.||||.|||||.||.|||||||||||..||.|||||| |||||.||..||||||||||||||||||
Sbjct 2290 GAGGGGTTGAGCAAACACAAACAGCAAAGAGGCTCTTCAGAAACAGTAGGTCTGGCAGGATCAAAGCCTTTCTC 2363
Query 1653 AACAGTTAAGTACAA----------------------------------------------------------- 1667
|.|||||||||||||
Sbjct 2364 ATCAGTTAAGTACAAGAGCGAGGAAGAGGAAGTAGTCCCACCTCGGCCTCCACTTCCTCGGTCTTATGACTTTA 2437
Query 1668 -------------------------------------------------------------------------- 1667
Sbjct 2438 CAGAGCAGCCTCCCATAATCCCCCCTCTGCCCAGTGATAGCAGCTCCTTGCTCTGTTATAGCAGGGGCCCCGTG 2511
Query 1668 -----------------------------------------------AAATGAG----------GGTCCAGATT 1684
||||| | ||||||||||
Sbjct 2512 CATCTGCCTGAAGACAAGAAGATTCATCAAGTTCAAGGATATCCAAGAAATG-GATCTCACTGTGGTCCAGATT 2584
Query 1685 ATAGACTCTACAAGAGTGAACCAGAGTTAACAACAGTGGCAGAAGTTGATGAATCTAATGGAGAAGAAAAATCA 1758
|||||||||||||||||||.|||||||||||.||||||||||||||.|||||||||||.|||||||||||.|||
Sbjct 2585 ATAGACTCTACAAGAGTGAGCCAGAGTTAACCACAGTGGCAGAAGTCGATGAATCTAACGGAGAAGAAAAGTCA 2658
Query 1759 GAACCTGTTTCAGAGATAGAAACTTCAGTTGTTAAAGGTTCCCACTTTCCTGTTGGAGTAGTCCCTCCAAGAGC 1832
||.||.|||||.||||.||||.||.||||.||||||||||||||.|||||.||.|| |||.||||..|||.|
Sbjct 2659 GAGCCAGTTTCTGAGACAGAAGCTCCAGTCGTTAAAGGTTCCCATTTTCCAGTCGG---AGTTCCTCTGAGAAC 2729
Query 1833 AAAATCACCAACACCCGAATCTTCGACAATAGCTTCCTATGTAACCTTGAGGAAAACTAAGAAGATGATGGATC 1906
|||.|||||.||||||||.||.||.||.||||||||||||||.|||||||||||.||||||||||||.||||.|
Sbjct 2730 AAAGTCACCCACACCCGAGTCCTCCACGATAGCTTCCTATGTGACCTTGAGGAAGACTAAGAAGATGGTGGAGC 2803
Query 1907 TAAGAACGGAAAGACCAAGAAGTGCAGTGGAACAGCTCTGTTTGGCTGAAAGTACTCGACCAAGGATGACTGTG 1980
|||||||||||||||||||||||||.|||||.|||||.|||.|||||||.|||.|||||||.||.|||||||||
Sbjct 2804 TAAGAACGGAAAGACCAAGAAGTGCCGTGGAGCAGCTGTGTCTGGCTGAGAGTGCTCGACCTAGAATGACTGTG 2877
Query 1981 GAAGAGCAAATGGAAAGAATAAGAAGACATCAACAAGCGTGCCTGAGGGAGAAGAAAAAAGGGTTAAATGTTAT 2054
||||||||..|.||.||.||.||.|||||.||.||.||.|||||||||||||||||.||.|||.|.|.|||..|
Sbjct 2878 GAAGAGCAGCTAGAGAGGATCAGGAGACACCAGCAGGCCTGCCTGAGGGAGAAGAAGAAGGGGCTGAGTGTCCT 2951
Query 2055 CGGTGCTTCAGACCAGTCACCCTTACAAAGCCCTTCAAATTTAAGGGATAATCCATTTAGGACTACTCAGACTC 2128
|||||||||.|| |||.|||.|..|.|||||.|.||||.|.|||..|||||||||||
Sbjct 2952 CGGTGCTTCCGA------------------CCCGTCAGACGTGAGGGACAGTCCACTCAGGCTTACTCAGACTC 3007
Query 2129 GAAGGAGGGATGA------TAAGGAACTGGACACTG-CCATTAGAGAAAATGATGTAAAGCCAGACCATGAAAC 2195
.|||||||||||| ||||||.||.|||||.| ||| .||||||||||||||||||||||||.|.||.||
Sbjct 3008 TAAGGAGGGATGATAACGTTAAGGAGCTAGACACCGTCCA-CAGAGAAAATGATGTAAAGCCAGACTACGAGAC 3080
Query 2196 TCCTGCA--ACAGAAATTGT--TCAACTAAAAGAAACCGAACCCCAAAATGTGGACTTCAGCAAAGAGTTAAAA 2265
|||.||| |||| ||| |||.|||.||||..|.||||||||.||||..|||.||.|||.|.||.|||||
Sbjct 3081 TCCAGCAGCACAG----TGTGCTCACCTAGAAGACGCTGAACCCCAGAATGCAGACATCGGCAGAAAGCTAAAA 3150
Query 2266 AAAACTGAAAACATTTCATATGAAATGCTTTTTGAACCTGAGCCAAATGGAGTAAATTCTGTGGAAATGATGGA 2339
| .||.|||||||||||....||||||.|||||||||.|...|||||.||||.|||.|||
Sbjct 3151 A---------------GATCTGAAATGCTTTACACACCTGAACCAAATGGAATGGCTTCTGAGGAAGTGACGGA 3209
Query 2340 TAAAGAAAGAAACAAAGACAAAATGCCTGAGGATGTTACATTCAGCCCTCAAGATGAAAC-------ACAGACC 2406
.||.||||||.|.|||||..|..|||.||..||||...|||.|||||||||.||.||.|| |||||.|
Sbjct 3210 GAAGGAAAGACAGAAAGAGCAGGTGCATGCCGATGGGTCATGCAGCCCTCAGGAAGAGACGGCCATGACAGAGC 3283
Query 2407 GCAAATCATAAACCAGAAGAGCATCCTGAAGAAAATACAAAGAACAGTGTTGACGAACAGGAAGAAACTGTTAT 2480
||||.| ..||||..|..|||||.||| .||.|| |||.||.|.||..|||||||||||.||..
Sbjct 3284 ----ATCAGA---TGGAAGGCCCCCCTGAGGAA---GCAGAG---AGTCTTCATGAGGAGGAAGAAACTCTTGC 3344
Query 2481 TTCTTACGAATCAACTCCTGAGGTTTCTAGAGGA-AATCAAACAATGGCAGTGAAAAGTCTGTCCCCATCTCCT 2553
|||.|..||..||.||||||||.||.|||| ||| ||||||||.| ||||||.||||||||||||.||||||
Sbjct 3345 TTCCTGTGAGCCAGCTCCTGAGATTCCTAG-GGAGAATCAAACCA---CAGTGAGAAGTCTGTCCCCGTCTCCT 3414
Query 2554 GAGTCCT---CGGCATCGCCAGTTCCATCCACTCAGCCGCAGCTCACAGAAGGATCACATTTCATGTGTGTG 2622
||.|||| ||||| .|||.|||..||||||..||.|||||||..||||||||.|||||||||||||||
Sbjct 3415 GACTCCTCCACGGCA---GCAGATCCGCCCACTCCTCCACAGCTCAGGGAAGGATCGCATTTCATGTGTGTG 3483
