Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12044
- Subject:
- XR_378093.2
- Aligned Length:
- 4268
- Identities:
- 1500
- Gaps:
- 2525
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGTCCGAGCTCACTCGCGGACCCTCCTTTATTTGGCACGCCACACACCAGAAAAGCCTTTCCCAAAAGCAGTTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCATTTCAACGCCCGGCGTCTCCCAGAGAAGCCCCGGGCTAGGCAGGCAGTAGCTGATTCAAAACCTCACAGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTCGGAGCCCAGCCCTCCGGGCGGGCGCCGGCGGGACCCGACCCCGGAACCTTCGCGCGGCGCGGGCGGGGCAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGGGGAGGGCTTTGGCGGGGGCGCGGCGCCGCTTCGCCCAGCCTCCGAGCGAGCGAGCGAGCGAGCGCAGCGCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGCCGGCGGCCGGCCGCGGAGGATGCCGAGGGGCGGCGACGCAGGCCGGACTCAGCCGGGGCGGCGGGGAGGGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCCGCCCGAGGGGGTAGGGCGGCCGCGGGGGCGCGCTCGGGCCGGGCCGCGCGCCCTGCGCTCCTTTCGCTCGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCGCTCGCTCGCTCGCTCGCGCCCTCCTTCCTCAGCGGCGGCGGCAGCACAAGGCGGCGGCGGCGGCGGCCGGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGCAGACATGGCGGCCGACCTGAACCTGGAGTGGATCTGCTCGCTGCCGCGCTCCTGGACGTACGGGATCACT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGGGGCGGCCGCGTCTTCTTCATCAACGAGGAGGCCAAGAGCACCACCTGGCTACACCCGGTCACCGGCGAGGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CGTGGTCACCGGGCACCGGCGGCAGAGCACAGATTTGCCCACTGGCTGGGAAGAAGCATATACGTTCGAAGGTG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAAGATACTATATAAACCACAATGAAAGGAAAGTGACCTGCAAGCATCCGGTTACAGGACAGCCATCCCAAGAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AACTGTATCTTTGTTGTGAATGATCAGACTGTTGCAACCATGACGTCCGAAGACAAGAAGGAACGACCCATAAG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TATGATAAATGAAGCTTCCAATTACAACATGGCTTCAGATTATGCAGTGCATCCCATGAGCCCTGTGGGCAGGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCTCGCGGGCCTCCAAAAAGGTTCATAATTTTGGGAAAAGGTCCAATTCAATTAAAAGGAACCCTAATGCACCT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GTGGTCCGGCGTGGCTGGCTGTATAAGCAGGACAGCACCGGCATGAAGCTGTGGAAGAAGCGCTGGTTTGTGCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CTCTGACCTTTGCCTTTTCTATTACCGAGATGAGAAGGAGGAGGGTATTTTGGGAAGTATCCTGTTGCCTAGTT 1184
Query 1 -----------------------------------------------------------------------ATG 3
|||
Sbjct 1185 TTCAGATAGCCATGCTCACTGCTGAGGACCACATCAATCGCAAATATGCTTTTAAGGCAGCCCACCCAAACATG 1258
Query 4 CGGACCTATTATTTCTGCACTGATACAGGAAAGGAAATGGAGTTGTGGATGAAAGCCATGTTAGATGCTGCCCT 77
||||||||||||||||||||.||||||||||||||.||||||.||||||||||.|||||||||||||||||.||
Sbjct 1259 CGGACCTATTATTTCTGCACCGATACAGGAAAGGAGATGGAGCTGTGGATGAAGGCCATGTTAGATGCTGCTCT 1332
Query 78 AGTACAGACAGAACCTGTGAAAA------------------GAGTGGACAAGATTACATCTGAAAATGCACCAA 133
.||.||||||||||||||||||| |||||||||||||||||.||||.|.||||.|||
Sbjct 1333 GGTGCAGACAGAACCTGTGAAAAGAATTACCTTTAATTTCCGAGTGGACAAGATTACAACTGACAGTGCATCAA 1406
Query 134 CTAAAGAAACCAATAACATTCCCAACCATAGAGTGCTAATTAAACCAGAGATCCAAAACAATCAAAAAAACAAG 207
|.||||||||||||||||||||||||||.|||||.||.||||.|||.|||.||||||||.||||.||.||.|||
Sbjct 1407 CCAAAGAAACCAATAACATTCCCAACCACAGAGTTCTCATTAGACCCGAGGTCCAAAACCATCAGAAGAATAAG 1480
Query 208 GAAATGAGCAAAATTGAAGAAAAAAAGGCATTAGAAGCTGAAAAATATGGATTTCAGAAGGATGGTCAAGATAG 281
|||||.|||||||||||||||||||.|||.|||||||||||||.|||.||||||||||||||.||.||||||||
Sbjct 1481 GAAATCAGCAAAATTGAAGAAAAAAGGGCCTTAGAAGCTGAAAGATACGGATTTCAGAAGGACGGGCAAGATAG 1554
Query 282 ACCCTTAACAAAAATTAATAGTGTAAAGCTGAATTCTCTGCCATCTGAATATGAGAGTGGGTCAGCATGCCCTG 355
|||.||||||||||||||.|||||.|||.||||.||.||||.|||.||||||||.||.|||.|||..|||||..
Sbjct 1555 ACCATTAACAAAAATTAACAGTGTGAAGTTGAACTCCCTGCTATCAGAATATGAAAGCGGGCCAGACTGCCCAC 1628
Query 356 CTCAGACTGTGCACTACAGACCAATCAACTTGAGCAGTTCAGAGAACAAAATAGTCAATGTTAGCCTGGCAGAT 429
||||||.|||.|||||||||||.|||||..|||..|||||.||...||||...||.|||||.|||.||||||||
Sbjct 1629 CTCAGAATGTACACTACAGACCCATCAATGTGAATAGTTCTGACGGCAAAGCGGTGAATGTCAGCTTGGCAGAT 1702
Query 430 CTTAGAGGTGGAAATCGCCCCAATACAGGGCCCTTATACACAGAGGCCGATCGAGTCATACAGAGAACAAATTC 503
.|..|.|||||.|.||.|||.|||.||||||||.||..||||||||||||.||||||||.||||||||.|||||
Sbjct 1703 GTCCGGGGTGGGAGTCACCCAAATGCAGGGCCCCTAGCCACAGAGGCCGACCGAGTCATTCAGAGAACGAATTC 1776
Query 504 AATGCAGCAGTTGGAACAGTGGATTAAAATCCAGAAGGGGAGGGGTCATGAAGAAGAAACCAGGGGAGTAATTT 577
||||||.|||.|.||.||||||||||||.|||||||.||..||||||.|||||||||..||||.||||||||||
Sbjct 1777 AATGCAACAGCTAGAGCAGTGGATTAAAGTCCAGAAAGGACGGGGTCTTGAAGAAGAGCCCAGAGGAGTAATTT 1850
Query 578 CTTACCAAACATTACCAAGAAATATGCCAAGTCACAGAGCCCAGATTATGGCCCGCTACCCTGAAGGTTATAGA 651
||||.||||||||.|||||||||||||||||.||||||||||||||..|||||||||.||||||||||||..|.
Sbjct 1851 CTTATCAAACATTGCCAAGAAATATGCCAAGCCACAGAGCCCAGATCCTGGCCCGCTGCCCTGAAGGTTACCGG 1924
Query 652 ACACTCCCAAGAAACAGCAAGACAAGGCCTGAAAGTATCTGCAGTGTAACCCCTTCCACTCATGACAAGACATT 725
||||||||.||||||||||||||.||.|||||.|||||||||||.||||||.||||...||||||.|||||
Sbjct 1925 ACACTCCCGAGAAACAGCAAGACCAGACCTGAGAGTATCTGCAGCGTAACCTCTTCTGGTCATGAGAAGAC--- 1995
Query 726 AGGACCCGGAGCGGAGGAGAAACGGAGGTCCATGAGAGATGACACAATGTGGCAGCTCTACGAATGGCAGCAGC 799
|||.||.|||||.||.|||||.|||.|.|||||||||||||||||.|||||||||||.|||||.||||||||||
Sbjct 1996 AGGGCCGGGAGCAGAAGAGAAGCGGCGATCCATGAGAGATGACACCATGTGGCAGCTGTACGAGTGGCAGCAGC 2069
Query 800 GTCAGTTTTATAACAAACAGAGCACCCTCCCTCGACACAGTACT--TTGAGTAGTCCCAAAACCATGGTAAATA 871
|.||||||||..||||.|||||||||||||||||.|||.| || .||||.|||||||||.|||||||..|..
Sbjct 2070 GCCAGTTTTACCACAAGCAGAGCACCCTCCCTCGGCACGG--CTGCCTGAGCAGTCCCAAAGCCATGGTGCAGG 2141
Query 872 TTTCTGACCAGACAATGCACTCTATTCCCACATCACCTTCCCACGGGTCAATAGCTGCTTATCAGGGATACTCC 945
|.|||||||||||.||||||||.||.|||||.|||||||||||.||||||..|||||||||.|||||.|.||||
Sbjct 2142 TGTCTGACCAGACGATGCACTCCATCCCCACGTCACCTTCCCATGGGTCAGCAGCTGCTTACCAGGGCTTCTCC 2215
Query 946 CCTCAACGAACTTACAGATCGGAAGTGTCTTCACCAATTCAGAGAGGAGATGTGACAATAGACCGCAGACACAG 1019
|||||.||.||.|||||.||.||||||.|.||.||.||.|||||||||||||||||.|||||||||||.|||||
Sbjct 2216 CCTCAGCGGACGTACAGGTCAGAAGTGACCTCGCCCATCCAGAGAGGAGATGTGACGATAGACCGCAGGCACAG 2289
Query 1020 GGCCCATCACCCTAAGCATGTCTATGTGCCTGACAGAAGGTCAGTGCCAGCTGGCCTGACTTTACAGTCTGTTA 1093
|.|.|||||||||||||||||||||||..||||||||||||||.|||||||||||.|.|||||||||.||||||
Sbjct 2290 GCCTCATCACCCTAAGCATGTCTATGTAGCTGACAGAAGGTCAATGCCAGCTGGCTTAACTTTACAGGCTGTTA 2363
Query 1094 GTCCCCAGAGCCTCCAAGGGAAAACG------------------------------------------------ 1119
|||||||||||||||||||.|.||||
Sbjct 2364 GTCCCCAGAGCCTCCAAGGCAGAACGCCAGAGGAGCTCACACTGCTGCTAATAAAGCTGAGACGGCAGCAGGCA 2437
Query 1120 -------------------------------------------------------------------------- 1119
Sbjct 2438 GAGCTGAGTAGTGTCCGGGAGCACACCTTAGCACAGCTCATGCAGCTGAAACTTGAGGCCCACAGCCCAAAGAA 2511
Query 1120 -------------------------------------------------------------------------- 1119
Sbjct 2512 TGAGATTCTTTCACATCATCTCCAAAGGAACACCATATATTTGGATCATCAGATGAAAGAAAATGAACCTATTA 2585
Query 1120 -------------------------------------------------------------------------- 1119
Sbjct 2586 TCACCATGGTTCACACAATGATTGAGAACTCGGCGCTAAGACCACAACTGTACCAACAATTCTTAAGACAGAAG 2659
Query 1120 ---------------------CTGTCACAAGATGAAGGTAGAGGCACATTATACAAATACAGACCTGAAGAAGT 1172
|||||||||||||||.||||||||||||||||||||||||||||||||||||.
Sbjct 2660 AACAAGATAAGTCTCTATTGTCTGTCACAAGATGAATGTAGAGGCACATTATACAAATACAGACCTGAAGAAGC 2733
Query 1173 AGATATTGATGCCAAGTTAAGCCGATTATGTGAACAAGATAAAGTGGTGCATGCTCTGGAAGAGAAACTTCAGC 1246
||.||||||||||||.||||||.||||.||||||||.|||||||||||.|..||.|||||.|||||.||.||||
Sbjct 2734 AGGTATTGATGCCAAATTAAGCAGATTGTGTGAACAGGATAAAGTGGTCCGAGCGCTGGAGGAGAAGCTGCAGC 2807
Query 1247 AACTCCACAAGGAGAAATACACGCTTGAGCAAGCTTTGCTATCAGCCAGCCAAGAGATAGAAATGCATGCAGAT 1320
|.||.|||||||||||||||||||||||||||||.|||||.||||||||||||||||||||.|||.||||.|||
Sbjct 2808 AGCTGCACAAGGAGAAATACACGCTTGAGCAAGCCTTGCTGTCAGCCAGCCAAGAGATAGAGATGAATGCTGAT 2881
Query 1321 AACCCAGCAGCCATTCAGACAGTGGTGTTACAAAGGGATGATTTACAAAATGGACTGCTTAGTACGTGTCGAGA 1394
||||||||.||||||||.||.||||||||.||.||||||||..|.|||||.||||||||.||.||||||||.||
Sbjct 2882 AACCCAGCTGCCATTCAAACTGTGGTGTTGCAGAGGGATGACCTGCAAAACGGACTGCTGAGCACGTGTCGGGA 2955
Query 1395 ACTTTCTCGAGCCACTGCCGAATTGGAACGAGCATGGAGAGAATATGATAAGTTAGAATACGATGTAACTGTTA 1468
|||.||.|||||||||||.||..||||||||||.||||||||||||||.|||||.|||||.|||||.|||||||
Sbjct 2956 ACTCTCCCGAGCCACTGCTGAGCTGGAACGAGCCTGGAGAGAATATGACAAGTTGGAATATGATGTGACTGTTA 3029
Query 1469 CCAGGAACCAGATGCAAGAGCAGCTGGATCACCTTGGTGAAGTTCAGACGGAATCAGCAGGAATTCAGCGTGCA 1542
|||||.||||||||||.|..|||||.||.|.||||||.|||||.||||..||.||.|||||||||||.||.|||
Sbjct 3030 CCAGGGACCAGATGCAGGGTCAGCTCGACCGCCTTGGAGAAGTGCAGAGTGAGTCGGCAGGAATTCAACGGGCA 3103
Query 1543 CAGATTCAGAAAGAACTTTGGCGAATTCAGGATGTCATGGAAGGGCTGAGTAAACATAAGCAGCAAAGAGGTAC 1616
||||||||.||.||.||.|||.|||||||.|||||||||||.|||.||||.|||||.||.|||||||||||..|
Sbjct 3104 CAGATTCAAAAGGAGCTCTGGAGAATTCAAGATGTCATGGAGGGGTTGAGCAAACACAAACAGCAAAGAGGCTC 3177
Query 1617 TACAGAAA---TAGGTATGATAGGATCAAAGCCTTTCTCAACAGTTAAGTACAA-------------------- 1667
|.|||||| |||||.||..|||||||||||||||||||.|||||||||||||
Sbjct 3178 TTCAGAAACAGTAGGTCTGGCAGGATCAAAGCCTTTCTCATCAGTTAAGTACAAGAGCGAGCAGGGGCCCCGTG 3251
Query 1668 -----------------------------------------------AAATGAG----------GGTCCAGATT 1684
||||| | ||||||||||
Sbjct 3252 CATCTGCCTGAAGACAAGAAGATTCATCAAGTTCAAGGATATCCAAGAAATG-GATCTCACTGTGGTCCAGATT 3324
Query 1685 ATAGACTCTACAAGAGTGAACCAGAGTTAACAACAGTGGCAGAAGTTGATGAATCTAATGGAGAAGAAAAATCA 1758
|||||||||||||||||||.|||||||||||.||||||||||||||.|||||||||||.||||||
Sbjct 3325 ATAGACTCTACAAGAGTGAGCCAGAGTTAACCACAGTGGCAGAAGTCGATGAATCTAACGGAGAA--------- 3389
Query 1759 GAACCTGTTTCAGAGATAGAAACTTCAGTTGTTAAAGGTTCCCACTTTCCTGTTGGAGTAGTCCCTCCAAGAGC 1832
Sbjct 3390 -------------------------------------------------------------------------- 3389
Query 1833 AAAATCACCAACACCCGAATCTTCGACAATAGCTTCCTATGTAACCTTGAGGAAAACTAAGAAGATGATGGATC 1906
Sbjct 3390 -------------------------------------------------------------------------- 3389
Query 1907 TAAGAACGGAAAGACCAAGAAGTGCAGTGGAACAGCTCTGTTTGGCTGAAAGTACTCGACCAAGGATGACTGTG 1980
Sbjct 3390 -------------------------------------------------------------------------- 3389
Query 1981 GAAGAGCAAATGGAAAGAATAAGAAGACATCAACAAGCGTGCCTGAGGGAGAAGAAAAAAGGGTTAAATGTTAT 2054
Sbjct 3390 -------------------------------------------------------------------------- 3389
Query 2055 CGGTGCTTCAGACCAGTCACCCTTACAAAGCCCTTCAAATTTAAGGGATAATCCATTTAGGACTACTCAGACTC 2128
Sbjct 3390 -------------------------------------------------------------------------- 3389
Query 2129 GAAGGAGGGATGATAAGGAACTGGACACTGCCATTAGAGAAAATGATGTAAAGCCAGACCATGAAACTCCTGCA 2202
Sbjct 3390 -------------------------------------------------------------------------- 3389
Query 2203 ACAGAAATTGTTCAACTAAAAGAAACCGAACCCCAAAATGTGGACTTCAGCAAAGAGTTAAAAAAAACTGAAAA 2276
Sbjct 3390 -------------------------------------------------------------------------- 3389
Query 2277 CATTTCATATGAAATGCTTTTTGAACCTGAGCCAAATGGAGTAAATTCTGTGGAAATGATGGATAAAGAAAGAA 2350
Sbjct 3390 -------------------------------------------------------------------------- 3389
Query 2351 ACAAAGACAAAATGCCTGAGGATGTTACATTCAGCCCTCAAGATGAAACACAGACCGCAAATCATAAACCAGAA 2424
Sbjct 3390 -------------------------------------------------------------------------- 3389
Query 2425 GAGCATCCTGAAGAAAATACAAAGAACAGTGTTGACGAACAGGAAGAAACTGTTATTTCTTACGAATCAACTCC 2498
Sbjct 3390 -------------------------------------------------------------------------- 3389
Query 2499 TGAGGTTTCTAGAGGAAATCAAACAATGGCAGTGAAAAGTCTGTCCCCATCTCCTGAGTCCTCGGCATCGCCAG 2572
Sbjct 3390 -------------------------------------------------------------------------- 3389
Query 2573 TTCCATCCACTCAGCCGCAGCTCACAGAAGGATCACATTTCATGTGTGTG 2622
Sbjct 3390 -------------------------------------------------- 3389
