Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12102
Subject:
NM_001123384.2
Aligned Length:
5109
Identities:
561
Gaps:
4548

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCTCTCAGCAACCCCCCTGTATGGGAACGTTCACAGCTGGATGAACAGCGAGAGGGTCCGCATGTGTGGGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAGCGAAGACAGGAAAATCCTTGTAAATGATGGTGACGCTTCAAAAGCCAGACTGGAACTGAGGGAAGAGAATC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCTTGAACCACAACGTGGTGGATGCGAGCACGGCCCATAGGATCGATGGCCTGGCAGCACTGAGCATGGACCGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACTGGCCTGATCCGGGAAGGGCTGCGGGTCCCGGGAAACATCGTCTATTCTAGCTTGTGTGGACTGGGCTCAGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GAAAGGTCGGGAGGCTGCCACAAGCACTCTAGGTGGCCTTGGGTTTTCTTCGGAAAGAAATCCAGAGATGCAGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCAAACCGAATACACCCGAGACAGTGGAGGCTTCTGCCGTCTCTGGAAAACCCCCAAATGGCTTCAGTGCTATA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TACAAAACACCGCCTGGAATACAAAAAAGTGCTGTAGCCACAGCAGAAGCGCTGGGCTTGGACAGGCCTGCCAG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CGACAAACAGAGCCCTCTCAACATCAATGGTGCTAGTTATCTGCGGCTGCCCTGGGTCAATCCTTACATGGAGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GTGCCACGCCAGCCATCTACCCTTTCCTCGACTCGCCAAATAAGTATTCACTGAACATGTACAAGGCCTTGCTA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CCTCAGCAGTCCTACAGCTTGGCCCAGCCGCTGTATTCTCCAGTCTGCACCAATGGGGAGCGCTTTCTCTACCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCCGCCACCTCACTACGTCGGTCCCCACATCCCATCGTCCTTGGCATCACCCATGAGGCTCTCGACACCTTCGG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CCTCCCCAGCCATCCCGCCTCTCGTCCATTGCGCAGACAAAAGCCTCCCGTGGAAGATGGGCGTCAGCCCTGGG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AATCCTGTTGATTCCCACGCCTATCCTCACATCCAGAACAGTAAGCAGCCCAGGGTTCCCTCTGCCAAGGCGGT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CACCAGTGGCCTGCCGGGGGACACAGCTCTCCTGTTGCCCCCCTCGCCTCGGCCGTCACCCCGAGTCCACCTTC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CCACCCAGCCTGCTGCAGACACCTACTCGGAGTTCCACAAGCACTATGCCAGGATCTCCACCTCTCCTTCAGTT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GCCCTGTCAAAGCCATACATGACAGTTAGCAGCGAGTTCCCCGCGGCCAGGCTCTCCAATGGCAAGTATCCCAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GGCTCCGGAAGGGGGCGAAGGTGCCCAGCCAGTGCCCGGGCATGCCCGGAAGACAGCGGTTCAAGACAGAAAAG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ATGGCAGCTCACCTCCTCTGTTGGAGAAGCAGACCGTTACCAAAGACGTCACAGATAAGCCACTAGACTTGTCT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TCTAAAGTGGTGGATGTAGATGCTTCCAAAGCTGACCACATGAAAAAGATGGCTCCCACGGTCCTGGTTCACAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CAGGGCTGGAAGTGGCTTAGTGCTCTCCGGAAGTGAGATTCCGAAAGAAACACTATCTCCTCCAGGAAATGGTT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GTGCTATCTATAGATCTGAAATCATCAGCACTGCTCCCTCATCCTGGGTGGTGCCCGGGCCAAGTCCTAACGAA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GAGAACAATGGCAAAAGCATGTCGCTGAAAAACAAGGCATTGGACTGGGCGATACCACAGCAGCGGAGTTCATC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATGCCCGCGCATGGGCGGCACCGATGCTGTCATCACTAACGTTTCAGGGTCAGTGTCGAGTGCAGGCCGCCCAG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CCTCCGCATCACCCGCCCCCAATGCCAATGCAGATGGCACCAAAACCAGCAGGAGCTCTGTAGAAACCACACCA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TCCGTTATTCAGCACGTGGGCCAGCCCCCGGCCACTCCTGCCAAGCACAGTAGCAGCACCAGCAGCAAGGGCGC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CAAAGCCAGCAACCCAGAACCGAGTTTCAAAGCAAACGAGAACGGCCTTCCACCAAGCTCTATATTTCTGTCTC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CAAATGAGGCATTCAGGTCCCCACCAATTCCCTACCCCAGGAGTTACCTCCCTTACCCAGCCCCTGAGGGCATT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GCTGTAAGTCCCCTCTCCTTACATGGCAAAGGACCTGTCTACCCTCACCCAGTTTTGTTACCCAATGGCAGTCT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GTTTCCTGGGCACCTTGCCCCAAAGCCTGGGCTGCCCTATGGGCTTCCCACCGGCCGTCCAGAGTTTGTGACCT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ACCAAGATGCCCTGGGGTTGGGCATGGTGCATCCCATGTTGATACCACACACGCCCATAGAGATTACTAAAGAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GAGAAACCAGAGAGGAGATCCCGGTCCCATGAGAGAGCCCGTTACGAGGACCCAACCCTCCGGAATCGGTTTTC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CGAGATTTTGGAAACTAGCAGCACCAAGTTACATCCAGATGTCCCCACCGACAAGAACCTAAAGCCGAACCCCA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  ACTGGAATCAAGGGAAGACTGTTGTCAAAAGCGACAAGCTTGTCTACGTAGACCTTCTCCGAGAAGAACCAGAT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GCTAAAACTGACACAAACGTGTCCAAACCCAGCTTTGCAGCAGAGAGTGTTGGCCAGAGCGCTGAGCCCCCCAA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GCCCTCAGTTGAGCCGGCCCTGCAGCAGCACCGTGATTTCATCGCCCTGAGAGAGGAGTTGGGGCGCATCAGTG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ACTTCCACGAAACTTATACTTTCAAACAGCCAGTCTTCACCGTAAGCAAGGACAGTGTTCTGGCAGGTACCAAC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AAAGAGAACCTAGGGTTGCCAGTCTCGACTCCATTCCTGGAGCCACCTCTGGGGAGCGATGGCCCTGCTGTAAC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TTTTGGTAAAACCCAAGAGGATCCCAAACCATTTTGTGTGGGCAGTGCCCCACCAAGTGTGGATGTGACCCCCA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CCTATACCAAAGATGGAGCTGATGAGGCTGAATCAAATGATGGCAAAGTTCTGAAACCGAAGCCATCTAAGCTG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GCAAAGAGAATCGCCAACTCAGCGGGTTACGTGGGTGACCGATTCAAATGTGTCACTACCGAACTGTATGCAGA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TTCCAGTCAGCTCAGCCGGGAGCAACGGGCATTGCAGCGTGCAATGATGCGCTTCTCAGAGTTGGAGATGAAAG  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  AAAGAGAAGGTGGCCACCCAGCAACCAAAGACTCCGAGATGTGCAAATTCAGCCCAGCCGACTGGGAAAGGTTG  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  AAAGGAAATCAGGACAAAAAGCCAAAGTCGGTCACCCTGGAGGAGGCCATTGCAGAACAGAACGAAAGTGAGAG  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  ATGCGAGTATAGTGTTGGAAACAAGCACCGTGATCCCTTTGAAGCCCCAGAGGACAAAGATCTTCCTGTGGAGA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  AGTACTTTGTGGAGAGGCAGCCTGTGAGCGAGCCTCCCGCAGACCAGGTGGCCTCGGACATGCCTCACAGCCCC  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  ACCCTCCGGGTGGACAGGAAACGCAAAGTCTCAGGTGACAGCAGCCACACTGAGACCACTGCGGAGGAGGTGCC  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  AGAGGACCCTCTGCTGAAAGCCAAACGCCGACGAGTCTCTAAAGGGCTCCATCCTAAAAAACAACGCCACTTGC  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  TGCACCTTAGAGAACGATGGGAGCAGCAGGTGTCGGCAGCAGATGGCAAACCTGGCCGGCAAAGCAGGAAGGAA  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  GTGACCCAGGCCACTCAGCCTGAGGCCATTCCTCAGGGGACTAACATCACTGAAGAGAAACCTGGCAGGAAAAG  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  GGCAGAGGCCAAAGGCAACAGAAGCTGGTCGGAAGAGTCTCTTAAACCCAGTGACAATGAACAAGGCTTGCCTG  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  TGTTCTCCGGCTCTCCGCCCATGAAGAGTCTTTCATCCACCAGTGCAGGCGGCAAAAAGCAGGCTCAGCCAAGC  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  TGCGCACCAGCCTCCAGGCCGCCTGCCAAACAGCAGAAAATTAAAGAAAACCAGAAGACAGATGTGCTGTGTGC  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  AGACGAAGAAGAGGATTGCCAGGCTGCCTCCCTGCTGCAGAAATACACCGACAACAGCGAGAAGCCATCCGGGA  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  AGAGACTGTGCAAAACCAAACACTTGATCCCTCAGGAGTCCAGGCGGGGATTGCCACTGACAGGGGAATACTAC  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  GTGGAGAATGCCGATGGCAAGGTGACTGTCCGGAGATTCAGAAAGCGGCCGGAGCCCAGTTCGGACTATGATCT  4070

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4071  GTCACCAGCCAAGCAGGAGCCAAAGCCCTTCGACCGCTTGCAGCAACTGCTACCAGCCTCCCAGTCCACACAGC  4144

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4145  TGCCATGCTCAAGTTCCCCTCAGGAGACCACCCAGTCTCGCCCTATGCCGCCGGAAGCACGGAGACTTATTGTC  4218

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4219  AATAAGAACGCTGGCGAGACCCTTCTGCAGCGGGCAGCCAGGCTTGGCTATGAGGAAGTGGTCCTGTACTGCTT  4292

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4293  AGAGAACAAGATTTGTGATGTAAATCATCGGGACAACGCAGGTTACTGCGCCCTGCATGAAGCTTGTGCTAGGG  4366

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4367  GCTGGCTCAACATTGTGCGACACCTCCTTGAATATGGCGCTGATGTCAACTGTAGTGCCCAGGATGGAACCAGG  4440

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4441  CCTCTGCACGATGCTGTTGAGAACGATCACTTGGAAATTGTCCGACTACTTCTCTCTTATGGTGCTGACCCCAC  4514

Query    1  ----------------------------------ATGACCCACAGTGAACTTATGGAAAAGTTCTTAACAGATT  40
                                              ||||||||||||||||||||||||||||||||||||||||
Sbjct 4515  CTTGGCTACGTACTCAGGTAGAACCATCATGAAAATGACCCACAGTGAACTTATGGAAAAGTTCTTAACAGATT  4588

Query   41  ATTTAAATGACCTCCAGGGTCGCAATGATGATGACGCCAGTGGCACTTGGGACTTCTATGGCAGCTCTGTTTGT  114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4589  ATTTAAATGACCTCCAGGGTCGCAATGATGATGACGCCAGTGGCACTTGGGACTTCTATGGCAGCTCTGTTTGT  4662

Query  115  GAACCAGATGATGAAAGTGGCTATGATGTTTTAGCCAACCCCCCAGGACCAGAAGACCAGGATGATGATGACGA  188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4663  GAACCAGATGATGAAAGTGGCTATGATGTTTTAGCCAACCCCCCAGGACCAGAAGACCAGGATGATGATGACGA  4736

Query  189  TGCCTATAGCGATGTGTTTGAATTTGAATTTTCAGAGACCCCCCTCTTACCGTGTTATAACATCCAAGTATCTG  262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4737  TGCCTATAGCGATGTGTTTGAATTTGAATTTTCAGAGACCCCCCTCTTACCGTGTTATAACATCCAAGTATCTG  4810

Query  263  TGGCTCAGGGGCCACGAAACTGGCTACTGCTTTCGGATGTCCTTAAGAAATTGAAAATGTCCTCCCGCATATTT  336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4811  TGGCTCAGGGGCCACGAAACTGGCTACTGCTTTCGGATGTCCTTAAGAAATTGAAAATGTCCTCCCGCATATTT  4884

Query  337  CGCTGCAATTTTCCAAACGTGGAAATTGTCACCATTGCAGAGGCAGAATTTTATCGGCAGGTTTCTGCAAGTCT  410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4885  CGCTGCAATTTTCCAAACGTGGAAATTGTCACCATTGCAGAGGCAGAATTTTATCGGCAGGTTTCTGCAAGTCT  4958

Query  411  CTTGTTCTCTTGCTCCAAAGACCTGGAAGCCTTCAACCCTGAAAGTAAGGAGCTGTTAGATCTGGTGGAATTCA  484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4959  CTTGTTCTCTTGCTCCAAAGACCTGGAAGCCTTCAACCCTGAAAGTAAGGAGCTGTTAGATCTGGTGGAATTCA  5032

Query  485  CGAACGAAATTCAGACTCTGCTGGGCTCCTCTGTAGAGTGGCTCCACCCCAGTGATCTGGCCTCAGACAACTAC  558
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5033  CGAACGAAATTCAGACTCTGCTGGGCTCCTCTGTAGAGTGGCTCCACCCCAGTGATCTGGCCTCAGACAACTAC  5106

Query  559  TGG  561
            |||
Sbjct 5107  TGG  5109

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