Construct: ORF ccsbBroadEn_12102
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006895.1_s300c1, BRDN0000390883
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BCOR (54880)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54880 | BCOR | BCL6 corepressor | NM_001123384.2 | 10.9% | 10.9% | 1_4548del |
| 2 | human | 54880 | BCOR | BCL6 corepressor | XM_005272620.4 | 10.9% | 10.9% | 1_4548del |
| 3 | human | 54880 | BCOR | BCL6 corepressor | NM_001123383.1 | 10.8% | 10.8% | 1_4602del |
| 4 | human | 54880 | BCOR | BCL6 corepressor | NM_017745.6 | 10.8% | 10.8% | 1_4602del |
| 5 | human | 54880 | BCOR | BCL6 corepressor | XM_017029615.1 | 10.8% | 10.8% | 1_4602del |
| 6 | human | 54880 | BCOR | BCL6 corepressor | XM_005272619.4 | 10.7% | 10.7% | 1_4650del |
| 7 | human | 54880 | BCOR | BCL6 corepressor | NM_001123385.2 | 10.6% | 10.6% | 1_4704del |
| 8 | human | 54880 | BCOR | BCL6 corepressor | XM_005272616.1 | 10.6% | 10.6% | 1_4704del |
| 9 | human | 54880 | BCOR | BCL6 corepressor | XM_005272618.3 | 10.6% | 10.6% | 1_4704del |
| 10 | human | 54880 | BCOR | BCL6 corepressor | XM_006724536.3 | 10.6% | 10.6% | 1_4704del |
| 11 | human | 54880 | BCOR | BCL6 corepressor | XM_011543929.2 | 10.6% | 10.6% | 1_4704del |
| 12 | human | 54880 | BCOR | BCL6 corepressor | XM_011543930.1 | 10.6% | 10.6% | 1_4704del |
| 13 | human | 54880 | BCOR | BCL6 corepressor | XM_011543931.2 | 10.6% | 10.6% | 1_4704del |
| 14 | human | 54880 | BCOR | BCL6 corepressor | XM_017029616.2 | 5.1% | 5.1% | 1_4704del;4977_4978ins288 |
| 15 | mouse | 71458 | Bcor | BCL6 interacting corepressor | NM_001168321.1 | 9.5% | 9.6% | (many diffs) |
| 16 | mouse | 71458 | Bcor | BCL6 interacting corepressor | NM_175046.3 | 9.5% | 9.6% | (many diffs) |
| 17 | mouse | 71458 | Bcor | BCL6 interacting corepressor | NM_175045.3 | 9.4% | 9.5% | (many diffs) |
| 18 | mouse | 71458 | Bcor | BCL6 interacting corepressor | NM_175044.3 | 9.3% | 9.4% | (many diffs) |
| 19 | mouse | 71458 | Bcor | BCL6 interacting corepressor | NM_029510.3 | 9.2% | 9.3% | (many diffs) |
| 20 | mouse | 71458 | Bcor | BCL6 interacting corepressor | XM_017318621.1 | 9.2% | 9.3% | (many diffs) |
| 21 | mouse | 71458 | Bcor | BCL6 interacting corepressor | XM_017318622.1 | 9.2% | 9.3% | (many diffs) |
| 22 | mouse | 71458 | Bcor | BCL6 interacting corepressor | XM_017318623.1 | 9.2% | 9.3% | (many diffs) |
| 23 | mouse | 71458 | Bcor | BCL6 interacting corepressor | XM_017318624.1 | 9.2% | 9.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 627
- ORF length:
- 561
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC CCACAGTGAA CTTATGGAAA AGTTCTTAAC AGATTATTTA AATGACCTCC 121 AGGGTCGCAA TGATGATGAC GCCAGTGGCA CTTGGGACTT CTATGGCAGC TCTGTTTGTG 181 AACCAGATGA TGAAAGTGGC TATGATGTTT TAGCCAACCC CCCAGGACCA GAAGACCAGG 241 ATGATGATGA CGATGCCTAT AGCGATGTGT TTGAATTTGA ATTTTCAGAG ACCCCCCTCT 301 TACCGTGTTA TAACATCCAA GTATCTGTGG CTCAGGGGCC ACGAAACTGG CTACTGCTTT 361 CGGATGTCCT TAAGAAATTG AAAATGTCCT CCCGCATATT TCGCTGCAAT TTTCCAAACG 421 TGGAAATTGT CACCATTGCA GAGGCAGAAT TTTATCGGCA GGTTTCTGCA AGTCTCTTGT 481 TCTCTTGCTC CAAAGACCTG GAAGCCTTCA ACCCTGAAAG TAAGGAGCTG TTAGATCTGG 541 TGGAATTCAC GAACGAAATT CAGACTCTGC TGGGCTCCTC TGTAGAGTGG CTCCACCCCA 601 GTGATCTGGC CTCAGACAAC TACTGGTGCC CAACTTTCTT GTACAAAGTt ggcattataa 661 gaaagcattg cttatcaatt tgttgcaacg aac