Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_12126
• Subject: NM_001256463.2
• Aligned Length: 1542
• Identities: 1069
• Gaps: 420

Alignment

Query    1  ATGCCTGAGATCAGAGTCACGCCCTTGGGGGCCGGCCAGGACGTGGGCCGAAGCTGCATCCTGGTCTCCATTGC  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGCCTGAGATCAGAGTCACGCCCTTGGGGGCCGGCCAGGACGTGGGCCGAAGCTGCATCCTGGTCTCCATTGC  74

Query   75  GGGCAAGAATGTCATGCTGGACTGTGGAATGCACATGGGCTTCAATGACGAC--CGACGCTTCCCT-GACTTC-  144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||  .||.|.|...|| ||..|| 
Sbjct   75  GGGCAAGAATGTCATGCTGGACTGTGGAATGCACATGGGCTTCAATGACGACGTAGATGATGAGCTGGAGATCA  148

Query  145  --TCCTAC-AT-CA--CCCAGAAC--------GGCCGCC-----------TAA--------CAGACTTCCTGGA  185
              .||||| || ||  ||    ||        |||.|||           |||        ||||.|...|||.
Sbjct  149  AGGCCTACTATGCAGGCC----ACGTGCTGGGGGCAGCCATGTTCCAGATTAAAGTGGGCTCAGAGTCTGTGGT  218

Query  186  CT----GTGTGATCATTA--------------GCCACTT-----CCACCTG----GACCACTGCGGGGCACTCC  232
            ||    |.|||||.||.|              |.|||||     |..||||    |||.|.|||    |.|.||
Sbjct  219  CTACACGGGTGATTATAACATGACCCCAGACCGACACTTAGGAGCTGCCTGGATTGACAAGTGC----CGCCCC  288

Query  233  --CCTACT--TCAGCGAGAT---GGTGGGCTACGACGGCCCCATCTACATGACTCACCCCACCCAGGCCATCTG  299
              |||.||  |||..||| |   .||..||.||||     |||||  |.|||||        |||.||  .|||
Sbjct  289  AACCTGCTCATCACAGAG-TCCACGTACGCCACGA-----CCATC--CGTGACT--------CCAAGC--GCTG  344

Query  300  CCCCATCTTGCTGGAG---GACTACCGCAAGA---TCGCCGTAGAC-------------AAGAAGG-GC-GAGG  352
            |         |.||||   ||||.||..||||   ||..|| ||||             ..||||| || ||  
Sbjct  345  C---------CGGGAGCGAGACTTCCTGAAGAAAGTCCACG-AGACCGTGGAGCGTGGTGGGAAGGTGCTGA--  406

Query  353  CCAACT-TCTTCAC---------CTCCCAGATGATCAAAGACTGCATCCTCCTGGAGACCTTCTGGGAGCGCAT  416
             .|.|| |.|||.|         |.|||||..|.|      |||||||||||||||||||||||||||||||||
Sbjct  407  -TACCTGTGTTCGCGCTGGGCCGCGCCCAGGAGCT------CTGCATCCTCCTGGAGACCTTCTGGGAGCGCAT  473

Query  417  GAACCTGAAGGTGCCCATCTACTTCTCCACGGGGCTGACCGAGAAGGCCAACCACTACTACAAGCTGTTCATCC  490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  474  GAACCTGAAGGTGCCCATCTACTTCTCCACGGGGCTGACCGAGAAGGCCAACCACTACTACAAGCTGTTCATCC  547

Query  491  CCTGGACCAACCAGAAGATCCGCAAGACTTTTGTGCAGAGGAACATGTTTGAGTTCAAGCACATCAAGGCCTTC  564
            |||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct  548  CCTGGACCAACCAGAAGATCCGCAAGACTTTCGTGCAGAGGAACATGTTTGAGTTCAAGCACATCAAGGCCTTC  621

Query  565  GACCGGGCTTTTGCTGACAACCCAGGACCGATGGTTGTGTTTGCCACGCCAGGAATGCTGCACGCTGGGCAGTC  638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  622  GACCGGGCTTTTGCTGACAACCCAGGACCGATGGTTGTGTTTGCCACGCCAGGAATGCTGCACGCTGGGCAGTC  695

Query  639  CCTGCAGATCTTCCGGAAATGGGCCGGAAACGAAAAGAACATGGTCATCATGCCCGGCTACTGCGTGCAGGGCA  712
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  696  CCTGCAGATCTTCCGGAAATGGGCCGGAAACGAAAAGAACATGGTCATCATGCCCGGCTACTGCGTGCAGGGCA  769

Query  713  CCGTCGGCCACAAGATCCTCAGCGGGCAGCGGAAGCTCGAGATGGAGGGGCGGCAGGTGCTGGAGGTCAAGATG  786
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  770  CCGTCGGCCACAAGATCCTCAGCGGGCAGCGGAAGCTCGAGATGGAGGGGCGGCAGGTGCTGGAGGTCAAGATG  843

Query  787  CAGGTGGAGTACATGTCATTCAGCGCACACGCGGACGCCAAGGGCATCATGCA---------------------  839
            |||||||||||||||||||||||||||||||||||||||||||||||||||||                     
Sbjct  844  CAGGTGGAGTACATGTCATTCAGCGCACACGCGGACGCCAAGGGCATCATGCAGCTGGTGGGCCAGGCAGAGCC  917

Query  840  --------------------------------------------------------------------------  839
                                                                                      
Sbjct  918  GGAGAGCGTGCTGCTGGTGCATGGCGAGGCCAAGAAGATGGAGTTCCTGAAGCAGAAGATCGAGCAGGAGCTCC  991

Query  840  --------------------------------------------------------------------------  839
                                                                                      
Sbjct  992  GGGTCAACTGCTACATGCCGGCCAATGGCGAGACGGTGACGCTGCCCACAAGCCCCAGCATCCCCGTAGGCATC  1065

Query  840  --------------------------------------------------------------------------  839
                                                                                      
Sbjct 1066  TCGCTGGGGCTGCTGAAGCGGGAGATGGCGCAGGGGCTGCTCCCTGAGGCCAAGAAGCCTCGGCTCCTGCACGG  1139

Query  840  ------------------------------GCTGGTGTCCTCAGAGCAAGCCCTCAAAGAGCTGGGTCTGGCTG  883
                                          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140  CACCCTGATCATGAAGGACAGCAACTTCCGGCTGGTGTCCTCAGAGCAAGCCCTCAAAGAGCTGGGTCTGGCTG  1213

Query  884  AGCACCAGCTGCGCTTCACCTGCCGCGTGCACCTGCATGACACACGCAAGGAGCAGGAGACGGCATTGCGCGTC  957
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214  AGCACCAGCTGCGCTTCACCTGCCGCGTGCACCTGCATGACACACGCAAGGAGCAGGAGACGGCATTGCGCGTC  1287

Query  958  TACAGCCACCTCAAGAGCGTCCTGAAGGACCACTGTGTGCAGCACCTCCCGGACGGCTCTGTGACTGTGGAGTC  1031
            ||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1288  TACAGCCACCTCAAGAGCGTCCTGAAGGACCACTGTGTGCAGCACCTCCCAGACGGCTCTGTGACTGTGGAGTC  1361

Query 1032  CGTCCTCCTCCAGGCCGCCGCCCCTTCTGAGGACCCAGGCACCAAGGTGCTGCTGGTCTCCTGGACCTACCAGG  1105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362  CGTCCTCCTCCAGGCCGCCGCCCCTTCTGAGGACCCAGGCACCAAGGTGCTGCTGGTCTCCTGGACCTACCAGG  1435

Query 1106  ACGAGGAGCTGGGGAGCTTCCTCACATCTCTGCTGAAGAAGGGCCTCCCCCAGGCCCCCAGC  1167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436  ACGAGGAGCTGGGGAGCTTCCTCACATCTCTGCTGAAGAAGGGCCTCCCCCAGGCCCCCAGC  1497