Construct: ORF ccsbBroadEn_12126
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010110.1_s300c1, BRDN0000388392
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- INTS11 (54973)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54973 | INTS11 | integrator complex subunit 11 | NM_001256463.2 | 69.3% | 62.2% | (many diffs) |
| 2 | human | 54973 | INTS11 | integrator complex subunit 11 | XM_011541650.2 | 65.9% | 52.7% | (many diffs) |
| 3 | human | 54973 | INTS11 | integrator complex subunit 11 | XM_017001557.1 | 65.9% | 52.7% | (many diffs) |
| 4 | human | 54973 | INTS11 | integrator complex subunit 11 | XM_017001558.1 | 65.9% | 52.7% | (many diffs) |
| 5 | human | 54973 | INTS11 | integrator complex subunit 11 | NM_001256462.1 | 65.4% | 57.1% | (many diffs) |
| 6 | human | 54973 | INTS11 | integrator complex subunit 11 | NM_017871.6 | 64.6% | 64.8% | (many diffs) |
| 7 | human | 54973 | INTS11 | integrator complex subunit 11 | NM_001256456.1 | 63.2% | 61.7% | (many diffs) |
| 8 | human | 54973 | INTS11 | integrator complex subunit 11 | XM_011541648.1 | 61.6% | 61.5% | (many diffs) |
| 9 | human | 54973 | INTS11 | integrator complex subunit 11 | NM_001256460.1 | 59.8% | 60% | (many diffs) |
| 10 | human | 54973 | INTS11 | integrator complex subunit 11 | XM_011541647.1 | 58.7% | 58.9% | (many diffs) |
| 11 | mouse | 71957 | Ints11 | integrator complex subunit 11 | NM_028020.3 | 56.5% | 62.6% | (many diffs) |
| 12 | mouse | 71957 | Ints11 | integrator complex subunit 11 | XM_006539194.2 | 46.2% | 50.3% | (many diffs) |
| 13 | mouse | 71957 | Ints11 | integrator complex subunit 11 | XM_006539195.2 | 37.4% | 42% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1233
- ORF length:
- 1167
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttGCNATGCC TGAGATCAGA GTCACGCCCT TGGGGGCCGG CCAGGACGTG GGCCGAAGCT 121 GCATCCTGGT CTCCATTGCG GGCAAGAATG TCATGCTGGA CTGTGGAATG CACATGGGCT 181 TCAATGACGA CCGACGCTTC CCTGACTTCT CCTACATCAC CCAGAACGGC CGCCTAACAG 241 ACTTCCTGGA CTGTGTGATC ATTAGCCACT TCCACCTGGA CCACTGCGGG GCACTCCCCT 301 ACTTCAGCGA GATGGTGGGC TACGACGGCC CCATCTACAT GACTCACCCC ACCCAGGCCA 361 TCTGCCCCAT CTTGCTGGAG GACTACCGCA AGATCGCCGT AGACAAGAAG GGCGAGGCCA 421 ACTTCTTCAC CTCCCAGATG ATCAAAGACT GCATCCTCCT GGAGACCTTC TGGGAGCGCA 481 TGAACCTGAA GGTGCCCATC TACTTCTCCA CGGGGCTGAC CGAGAAGGCC AACCACTACT 541 ACAAGCTGTT CATCCCCTGG ACCAACCAGA AGATCCGCAA GACTTTTGTG CAGAGGAACA 601 TGTTTGAGTT CAAGCACATC AAGGCCTTCG ACCGGGCTTT TGCTGACAAC CCAGGACCGA 661 TGGTTGTGTT TGCCACGCCA GGAATGCTGC ACGCTGGGCA GTCCCTGCAG ATCTTCCGGA 721 AATGGGCCGG AAACGAAAAG AACATGGTCA TCATGCCCGG CTACTGCGTG CAGGGCACCG 781 TCGGCCACAA GATCCTCAGC GGGCAGCGGA AGCTCGAGAT GGAGGGGCGG CAGGTGCTGG 841 AGGTCAAGAT GCAGGTGGAG TACATGTCAT TCAGCGCACA CGCGGACGCC AAGGGCATCA 901 TGCAGCTGGT GTCCTCAGAG CAAGCCCTCA AAGAGCTGGG TCTGGCTGAG CACCAGCTGC 961 GCTTCACCTG CCGCGTGCAC CTGCATGACA CACGCAAGGA GCAGGAGACG GCATTGCGCG 1021 TCTACAGCCA CCTCAAGAGC GTCCTGAAGG ACCACTGTGT GCAGCACCTC CCGGACGGCT 1081 CTGTGACTGT GGAGTCCGTC CTCCTCCAGG CCGCCGCCCC TTCTGAGGAC CCAGGCACCA 1141 AGGTGCTGCT GGTCTCCTGG ACCTACCAGG ACGAGGAGCT GGGGAGCTTC CTCACATCTC 1201 TGCTGAAGAA GGGCCTCCCC CAGGCCCCCA GCTGcccaac tttcttgtac aaagttggca 1261 ttataagaaa gcattgctta tcaatttgtt gcaacgaac