Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12183
- Subject:
- XM_017321767.1
- Aligned Length:
- 4410
- Identities:
- 2520
- Gaps:
- 1647
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGAAGTATTAAGAGATCCAATTAAGAAGAATAGTTCTGAGTCTAAACCAGCCCAGAGTGGCTTCTCTAGGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAACTCCCCGCTCTGCTGCCCTGAATCTGTGGAGGCTAGTCCAGCAGTTAATGAGAAGAGCGTGTATTCCACTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATAATTATGGGACCACTCAGAGGCATGGGTGTCGAGGACTGCCTTATGCTGATCATAATTACGGAGCCCCTCCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTCCGACACCTCCTGCTTCTCCCCCTGTCCAGACGATCATCCCTCGTTCTGACCTGAATGGCCTGCCGTCGCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CGTAGAGGAACGCTGTGGAGACAGCCCGAACTCTGAAGGAGAGACTGTTCCTACCTGGTGTCCTTGTGGTCTTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAGGGGAATGAGCAGGGGGAAGGTTATTAGACTTCATCGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CGGAAGCAGGACAACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGATGAGGAGCTTTCTCCTTCCAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGTGTTGTACACAGCAACACAGCACACACCTACAAGCATCACCTTAACTGTTAGAAGAACCAAACCCAAGAAGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGAAAAAGAGTCCAGAAAAGGGTCGTGCAGCACCAAAGACGAAGAAGATCAAGAATTCTCCCTCGGAAGCACAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AATTTAGATGAAAATACCACTGAGGGCTGGGAAAATCGGATAAGACTATGGACTGATCAATATGAAGAAGCTTT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CACTAATCAGTACAGTGCAGATGTACAGAATGCCCTTGAGCAACATCTCCATTCTAACAAGGAATTTGTGGGCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AACCTGCAATTTTAGACACTATTAATAAAACTGAACTGGCCTGTAATAATACAGTAATCGGTTCCCAAATGCAG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTACAGCTGGGAAGAGTCACTCGTGTTCAAAAGCACCGGAAAATCCTGAGGGCTGCAAGAGATTTGGCTTTGGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CACTCTTATAATAGAATATCGTGGGAAAGTCATGTTACGACAACAATTTGAGGTCAATGGGCATTTCTTTAAAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AACCATATCCCTTTGTGCTCTTCTACTCAAAATTCAATGGTGTAGAGATGTGTGTCGATGCTCGTACTTTCGGT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AATGATGCTCGGTTCATCAGAAGATCATGTACACCAAATGCAGAGGTGAGACACATGATTGCAGATGGGATGAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCACTTGTGTATCTATGCCGTATCTGCTATCACCAAGGATGCAGAAGTCACCATTGCATTTGATTATGAATATA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GTAACTGTAATTACAAAGTGGACTGTGCTTGTCACAAGGGAAACCGGAATTGCCCTATACAGAAAAGAAATCCC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AATGCTGCAGAATTGCCACTCCCACCTCCTCCTAGCTTTCCCACCATTGGAGCAGAGACCAGACGTAGAAAAGC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ACGGCGGAAAGAGCTGGAGCTGGAGCAGCAAAATGAGGTTCCAGAAGAGAATCCTGACCCGCAACCACAAGAAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTCCAGAAAAAGTAACTGTATCCAATGAGCATGAGGAAGTTGACAATCCAGAAGAAAAACCAGAAGAAGAAGAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAAGAAGAGGCTACAGATGACCAGGAGAACTCTGCTCATAGCAGAAGGACTCGAGAAGACCGAAAGGTTGAAGC 1628
Query 1 ----ATGCATGCTTTTGAAAACTTAGAGAAAAGAAAGAAGCGGCGGGATCAGCCCTTGGAACAGAGCAACTCTG 70
|||||||||||||||...||||||||.||||||||.||||||||||||||..|.||||||||||.|||.|
Sbjct 1629 CATCATGCATGCTTTTGAATCTTTAGAGAAGAGAAAGAAACGGCGGGATCAGCCTGTAGAACAGAGCAGCTCGG 1702
Query 71 ATGTAGAGATTACTACAACCACCTCAGAGACTCCT----GTTGGTGAAGAGACAAAAACTGAAGCCCCTGAATC 140
|..|||||||||||||.|.||..||||||| | |||||.||||||||||||||||.|||||||||.||
Sbjct 1703 ACATAGAGATTACTACTAGCAGTTCAGAGA----TAGTAGTTGGAGAAGAGACAAAAACTGCAGCCCCTGAGTC 1772
Query 141 TGAAGTTAGCAACTCTGTTTCAAATGTTACCATCCCAAGCACCCCACAGAGTGTTGGTGTGAATACCCGGAGGT 214
|||||||||||.|.||||||||||||||.|.||||||||||||||||||||...||||||||||||.|||||||
Sbjct 1773 TGAAGTTAGCAGCCCTGTTTCAAATGTTGCTATCCCAAGCACCCCACAGAGCACTGGTGTGAATACTCGGAGGT 1846
Query 215 CTTCCCAAGCAGGGGATATTGCTGCAGAAAAACTAGTCCCCAAGCCACCTCCAGCAAAGCCTTCTAGGCCCCGG 288
|.|||||.||.||||||.|.|||||||||||.|.|.||||.||.|||||||||||.|||||||||||.|||||.
Sbjct 1847 CCTCCCATGCTGGGGATGTAGCTGCAGAAAAGCCAATCCCTAAACCACCTCCAGCTAAGCCTTCTAGACCCCGA 1920
Query 289 CCGAAGAGTCGAATTTCTCGGTACAGGACCAGTTCAGCCCAAAGACTAAAGCGTCAGAAGCAGGCCAATGCACA 362
|||||.|||.||||||||||||||.|||||||||||||||||||||||||.||.|||||||||||||.||||||
Sbjct 1921 CCGAAAAGTAGAATTTCTCGGTACCGGACCAGTTCAGCCCAAAGACTAAAACGCCAGAAGCAGGCCATTGCACA 1994
Query 363 GCAGGCAGAATTGTCACAAGCTGCCTTGGAAGAGGGAGGAAGTAACAGTTTAGTAACTCCTACTGAAGCTGGAA 436
.|||||||||.||||.|||||||||||||||||.|||||||||||||..|.||||||||||.||||||||||||
Sbjct 1995 ACAGGCAGAACTGTCGCAAGCTGCCTTGGAAGAAGGAGGAAGTAACAACTCAGTAACTCCTCCTGAAGCTGGAA 2068
Query 437 GTCTAGACAGTTCAGGAGAAAACAGGCCATTAACAGGGTCTGACCCAACTGTGGTGTCAATTACTGGATCCCAT 510
.|..|||||||||||||||.|||||.|...|||||||||||||||||||||||.|.|||.||||||||||||||
Sbjct 2069 ATACAGACAGTTCAGGAGAGAACAGACAGCTAACAGGGTCTGACCCAACTGTGATATCAGTTACTGGATCCCAT 2142
Query 511 GTCAACCGTGCTGCATCTAAATACCCCAAAACCAAAAAGTATCTAGTTACAGAATGGTTGAATGACAAAGCAGA 584
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||
Sbjct 2143 GTCAACCGTGCTGCATCTAAATACCCCAAAACCAAAAAGTATCTAGTTACAGAATGGTTAAATGACAAGGCAGA 2216
Query 585 GAAGCAAGAGTGCCCTGTTGAGTGCCCTTTACGTATCACAACGGATCCAACTGTACTGGCAACGACCCTAAACA 658
|||||||||.||||||||||||||.|||||.||||||||.||.||.||||||||..|||||||.|||||.||||
Sbjct 2217 GAAGCAAGAATGCCCTGTTGAGTGTCCTTTGCGTATCACCACTGACCCAACTGTGTTGGCAACAACCCTGAACA 2290
Query 659 TGTTACCAGGTCTTATCCATTCCCCGTTAATTTGCACCACCCCCAAACACTACATTCGCTTTGGCTCACCCTTT 732
||.|||||||||||||.||||||||.||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 2291 TGCTACCAGGTCTTATTCATTCCCCATTAATTTGTACCACCCCCAAACACTACATTCGCTTTGGCTCACCCTTT 2364
Query 733 ATCCCTGAGAGACGTCGAAGGCCCCTTCTGCCTGATGGCACATTCAGCTCCTGTAAGAAGCGCTGGATAAAACA 806
||.||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 2365 ATGCCTGAGAGGCGTCGAAGGCCCCTTCTGCCTGATGGCACATTCAGCTCCTGTAAGAAGCGCTGGATAAAGCA 2438
Query 807 AGCCTTAGAAGAAGGGATGACTCAAACATCATCTGTACCCCAAGAGACTAGAACTCAGCACCTATACCAAAGCA 880
||||||.|||||||||||||||||.||.||||||||.|||||||||||||||||.|||||||||||||||||.|
Sbjct 2439 AGCCTTGGAAGAAGGGATGACTCAGACTTCATCTGTGCCCCAAGAGACTAGAACACAGCACCTATACCAAAGTA 2512
Query 881 ATGAGAATAGTAGCTCTTCTAGTATCTGCAAAGACAATGCAGACTTGTTGAGCCCATTAAAGAAATGGAAGTCT 954
||||||.|||||..||||||||||||||.|||||||||||||||||..||||||||||||||||||||||||||
Sbjct 2513 ATGAGACTAGTAATTCTTCTAGTATCTGTAAAGACAATGCAGACTTACTGAGCCCATTAAAGAAATGGAAGTCT 2586
Query 955 CGCTATCTGATGGAGCAGAATGTCACCAAGTTACTTCGGCCTCTGTCTCCAGTCACACCACCCCCTCCCAATTC 1028
|||||||||||||||||||||.||||||||||.||||.|||||||||||||||.|||||||||||.||||..||
Sbjct 2587 CGCTATCTGATGGAGCAGAATATCACCAAGTTGCTTCAGCCTCTGTCTCCAGTTACACCACCCCCACCCAGCTC 2660
Query 1029 AGGCTCAAAGAGTCCCCAGCTGGCCACACCTGGCTCA-TCTCACCCAGGAGAAGAGGAGTGTCGAAATGGATAC 1101
||||||||||||||||||||||.||||||||||| || .|||||||||||||||||||||||||||||||||||
Sbjct 2661 AGGCTCAAAGAGTCCCCAGCTGACCACACCTGGC-CAGACTCACCCAGGAGAAGAGGAGTGTCGAAATGGATAC 2733
Query 1102 AGCCTCATGTTTTCACCAGTCACATCTCTTACTACTGCTAGTCGCTGCAACACTCCTCTACAGTTTGAGCTTTG 1175
|||||||||||.||||||.|||||||||||||||||||||||||.|.||||||||||||.||||||||||||||
Sbjct 2734 AGCCTCATGTTCTCACCAATCACATCTCTTACTACTGCTAGTCGTTCCAACACTCCTCTGCAGTTTGAGCTTTG 2807
Query 1176 TCACCGAAAAGACCTGGATTTGGCAAAAGTAGGATACCTTGACTCCAACACTAACAGCTGTGCTGATAGACCTT 1249
|||||||||||||||.||||||.|||||||.||||.||..|||||||.||||.|||||||.||||||||.||.|
Sbjct 2808 TCACCGAAAAGACCTAGATTTGACAAAAGTGGGATTCCCAGACTCCAGCACTCACAGCTGCGCTGATAGGCCCT 2881
Query 1250 CCCTACTCAACT-CAGGTCATTCTGACCTGGCTCCTCATCCCTCCCTCGGACCCACTTCTGAGACTGGTTTCCC 1322
||||.||.|||| || .||||.|||||||||||.||||||||||..|.|..|||||.||.|||.||||.|||||
Sbjct 2882 CCCTGCTTAACTGCA-ATCATCCTGACCTGGCTTCTCATCCCTCTGTTGTTCCCACCTCCGAGGCTGGCTTCCC 2954
Query 1323 AAGCAGAAGTGGAGATGGACATCAGACCCTCGTGAGAAACTCAGACCAGGCATTTCGGACAGAGTTCAACTTGA 1396
||||||.|||||||||||.|.|||||||.|..|||||||||||||||||||.|||.|||||||||||||.||||
Sbjct 2955 AAGCAGGAGTGGAGATGGTCCTCAGACCTTGCTGAGAAACTCAGACCAGGCGTTTAGGACAGAGTTCAATTTGA 3028
Query 1397 TGTATGCCTACTCCCCTTTGAATGCTATGCCTCGAGCAGATGGACTGTATCGAGGATCTCCTCTAGTGGGGGAT 1470
||||.|||||||||||||||||||||||||||||||||||||||||||||.||||.|||||..|.|||||.||.
Sbjct 3029 TGTACGCCTACTCCCCTTTGAATGCTATGCCTCGAGCAGATGGACTGTATAGAGGGTCTCCCTTGGTGGGAGAC 3102
Query 1471 AGGAAGCCTTTACATTTGGATGGGGGATATTGTTCCCCTGCAGAAGGATTTTCCAGCAGATATGAACATGGCTT 1544
|||||||||||||||||.|||||.|||||||||||||||||.|||||.||||||||||||||||||||||||||
Sbjct 3103 AGGAAGCCTTTACATTTAGATGGAGGATATTGTTCCCCTGCTGAAGGCTTTTCCAGCAGATATGAACATGGCTT 3176
Query 1545 AATGAAAGACCTCTCTCGTGGATCCTTGTCACCTGGTGGTGAAAGGGCCTGTGAAGGAGTCCCATCTGCCCCCC 1618
.|||||||||||||||||.||||||.||||||||||||||||||||.||||||||||||||||||||||.||.|
Sbjct 3177 TATGAAAGACCTCTCTCGGGGATCCATGTCACCTGGTGGTGAAAGGACCTGTGAAGGAGTCCCATCTGCTCCTC 3250
Query 1619 AGAACCCACCACAGAGGAAAAAAGTATCCCTGCTGGAGTACCGAAAACGGAAACAAGAAGCTAAGGAAAATTCT 1692
||||||||||.||.||||||||.||||||.||||.||||||||.|||.|.|||||||||||||||||.||||
Sbjct 3251 AGAACCCACCGCAAAGGAAAAAGGTATCCTTGCTAGAGTACCGCAAAAGAAAACAAGAAGCTAAGGAGAATT-- 3322
Query 1693 GCTGGTGGGGGAGGTGACTCTGCACAGAGCAAAAGCAAGTCTGCAGGAGCTGGGCAAGGCAGCAGTAACTCCGT 1766
|||||||||||..|||||||.||||||||||||||||||||.||||||||||||||||||||||||||||.||
Sbjct 3323 -CTGGTGGGGGAAATGACTCTTCACAGAGCAAAAGCAAGTCTTCAGGAGCTGGGCAAGGCAGCAGTAACTCTGT 3395
Query 1767 TTCCGACACTGGTGCCCATGGTGTGCAGGGATCCTCAGCCCGAACTCCATCTTCCCCTCACAAAAAATTCTCCC 1840
|||.||||||||||||||||||||||||||||||||||||.||||.||.||.|||||||||||||||||.||||
Sbjct 3396 TTCTGACACTGGTGCCCATGGTGTGCAGGGATCCTCAGCCGGAACCCCGTCATCCCCTCACAAAAAATTTTCCC 3469
Query 1841 CATCTCATTCCTCTATGTCCCATTTGGAGGCGGTAAGCCCATCAGATTCCAGAGGCACTTCTTCATCTCACTGC 1914
|.||||||||||||...||.||||||||||||||||||||.|||||||||||.|||||||||||.|||||||||
Sbjct 3470 CGTCTCATTCCTCTGCATCGCATTTGGAGGCGGTAAGCCCGTCAGATTCCAGGGGCACTTCTTCCTCTCACTGC 3543
Query 1915 AGACCTCAAGAGAATATCAGCAGTAGGTGGATGGTTCCCACATCAGTAGAACGACTCCGAGAAGGAGGGAGCAT 1988
|||||||||||.||.|||||||||||||||||||||||.||||||||.||||||||||||||||||||.|||||
Sbjct 3544 AGACCTCAAGAAAACATCAGCAGTAGGTGGATGGTTCCTACATCAGTTGAACGACTCCGAGAAGGAGGTAGCAT 3617
Query 1989 CCCCAAGGTCCTCCGAAGCAGCGTGAGGGTGGCCCAAAAGGGAGAGCCCTCTCCCACATGGGAGAGTAACATCA 2062
|||.|||||.||.||||||||.|||||.||.|||||.|||||||||||.|||||.|||||||||||||||||||
Sbjct 3618 CCCTAAGGTTCTTCGAAGCAGTGTGAGAGTTGCCCAGAAGGGAGAGCCTTCTCCAACATGGGAGAGTAACATCA 3691
Query 2063 CAGAGAAAGACTCAGACCCTGCAGATGGAGAAGGCCCAGAGACATTAAGCTCAGCACTCTCTAAAGGAGCAACA 2136
||||||||||.||||||||||||||||||||||||||||||.||||.||||||||||||||||||||||||||.
Sbjct 3692 CAGAGAAAGAGTCAGACCCTGCAGATGGAGAAGGCCCAGAGCCATTGAGCTCAGCACTCTCTAAAGGAGCAACT 3765
Query 2137 GTTTACAGCCCTTCCAGATACAGCTACCAGCTCCTGCAGTGTGATAGTCCTCGGACAGAATCACAAAGCCTCCT 2210
||||||||||||||||||||.|||||||||||||||||||||||.|||||.|||||||||||||||||||||||
Sbjct 3766 GTTTACAGCCCTTCCAGATATAGCTACCAGCTCCTGCAGTGTGACAGTCCACGGACAGAATCACAAAGCCTCCT 3839
Query 2211 TCAGCAGAGTTCCTCCCCCTTCAGAGGACATCCTACACAGTCTCCAGGATACAGTTATCGAACTACTGCACTGA 2284
||||||||||||.||||||||.|||||||||||.||.||.||||||||||||||||||||||||||||||||||
Sbjct 3840 TCAGCAGAGTTCGTCCCCCTTTAGAGGACATCCCACCCAATCTCCAGGATACAGTTATCGAACTACTGCACTGA 3913
Query 2285 GACCTGGAAACCCCCCCTCTCACGGTTCTTCAGAATCATCCCTCTCTTCCACGTCCTATTCCAGCCCCGCCCAC 2358
|||||||||||||.|||||||||||||||||||||||.||||||||||||||||||||..|||||||.||||||
Sbjct 3914 GACCTGGAAACCCTCCCTCTCACGGTTCTTCAGAATCCTCCCTCTCTTCCACGTCCTACCCCAGCCCTGCCCAC 3987
Query 2359 CCTGTGTCCACAGACTCGTTGGCCCCATTTACGGGGACACCAGGGTATTTTAGCAGCCAGCCACATTCTGGAAA 2432
||||||||.|||||||||||||||||||||||||||||.||||||||||..|||||||||||.|||||||||||
Sbjct 3988 CCTGTGTCTACAGACTCGTTGGCCCCATTTACGGGGACTCCAGGGTATTACAGCAGCCAGCCGCATTCTGGAAA 4061
Query 2433 CAGCACTGGCAGCAATCTTCCAAGGAGGAGCTGCCCTTCTAGTGCTGCTAGCCCTACCCTGCAGGGACCCTCAG 2506
|||||||||||||||||||||||||||||||||..||||.|||||||||||||||||||..|||||.|||||||
Sbjct 4062 CAGCACTGGCAGCAATCTTCCAAGGAGGAGCTGTTCTTCAAGTGCTGCTAGCCCTACCCCACAGGGCCCCTCAG 4135
Query 2507 ACTCGCCAACCTCAGATTCAGTTTCTCAGTCCAGCACAGGAACTCTGAGTTCCACCTCCTTTCCTCAGAACTCT 2580
||||.||.||||||||.||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4136 ACTCACCGACCTCAGACTCGGTTTCTCAGTCCAGCACAGGAACTCTGAGTTCCACCTCCTTTCCTCAGAACTCT 4209
Query 2581 AGGTCGTCATTGCCATCAGACTTACGGACTATCAGTCTGCCCAGTGCTGGGCAGTCAGCTGTCTACCAGGCCTC 2654
|||||.|||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||||||||||||
Sbjct 4210 AGGTCTTCATTGCCATCAGACTTACGGACTATCAGTCTGCCCAATGCTGGGCAGTCAGCTGCCTACCAGGCCTC 4283
Query 2655 CAGGGTATCTGCGGTTTCCAATTCACAGCACTACCCACACCGTGGGAGTGGGGGTGTGCACCAGTACCGACTCC 2728
|||||||||||||||||||||||||||||||||||||||.|||||.|||||||||||.||||||||||||||||
Sbjct 4284 CAGGGTATCTGCGGTTTCCAATTCACAGCACTACCCACATCGTGGTAGTGGGGGTGTACACCAGTACCGACTCC 4357
Query 2729 AGCCACTGCAAGGGTCAGGAGTCAAGACTCAGACGGGACTTTCC 2772
||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 4358 AGCCACTGCAAGGGTCAGGAGTCAAGACTCAGACAGGACTTTCC 4401
