Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12253
- Subject:
- NR_037906.1
- Aligned Length:
- 2785
- Identities:
- 927
- Gaps:
- 1754
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTCCCCGCGGCCGGAAAGCGCCGTGCGGGCTTCAGGCTGATAGGAGCGTCTTTCCTCGTCGCTGTTTGCGGCTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCTGGTCGAGTTGTGCGGAGCTTCTCGGCCGTCCCCACTGGCCACCATGTCCGCCCAGGCGCAGATGCGGGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGTTGGACCAGCTCATGGGCACGGCTCGGGACGGTTCAGTGTATCTTTGCCTGCCTACATCAATCTGCAAGGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGTTGCAGAAAAGCCTCATGTTCATCGAGCCGTGAGTCACAACCAATTTCTAAGCTGTTATAACAAAAAAGTGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTGCTTTTTTCCCACAAGTAACTTTAAAAGTGTAGTTTAGAAAGAAAACATTTTCAGTAAAAAGACACGACATT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AATCCTGGATGCTTGCCAATCCTGAAGTATATTCTCCCTGACTATTACACAGCACTGTGTCCTGTACACAGATA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCTTAGAATTTGTCACATACCACTTTGCCTTTACTTTTATGTATCATTCCCCGACTTCCTTACTGCAGGTGTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGCAAGAAAACTTTTCCTTTAAAACTTTTCAACAGCGGGCATAAAATTCTGCAGCTGAGTTCTTGAAGATTGCA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GATGGGTACAGTATGTGTTGGAGTTCACAGTGTGTATTGACTAACCTGATTCCTTTTTGCTTTCTTTGGTATTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCTTGTTAAAAGTGACTCCCAGGTGCCAACTTTCCTTTTTGAGGGTGGGGATGAAAGGGGAAGAAGAAGAAGAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAGGTCTAGAGATATTTAAGTCAGTGATAGAGCTTGAAACCGTTCTTCCTCTTGTAGTTTTTTTTCATAAAATA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTGCCTATTAATTTGATTCTAACAAGAAAATCAGATTATTGAATAGCTTTGGTTGGTGGAGATTGGCAGCTGTA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATGATCCGCAGTGGATTCATGGCACTCATTACACCCAGTCTTGATGGGTCATTTGCCCACATGTAAATTTGGGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGATGCCTTCTGGTGCTCACTCCTACTTCTGACTCTGTTCTGCGAATTAACGGTGGAGTTAGATGTGGTTCAGT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GTGCTTCTTCATAAAAAACTTAGCTTAAAAACTATTTGTATTTTATTCCAATTGTAAATATCTTTAGCTCAGTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TCTTAGTGTATATGATGGGAAGAATACAGAAACACTAGTCTGCAAATCGTCCAGGTGTATTAATTTTGCCAGAT 1184
Query 1 ----------------------------------------ATGCAGATG-------GGAGACGAAACCAGACAG 27
| ||.||| |||||.||||||||||||
Sbjct 1185 AGCCTTGTGTAGTGAATGAGATAATACTTTATTTAAAACCA--CAAATGAATTTCAGGAGATGAAACCAGACAG 1256
Query 28 AGGGTCAAGTTTACAGATGACCGTGTCTGCAAGAGTCACCTTCTGGACTGCTGCCCCCATGACATCCTGGCTGG 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1257 AGGGTCAAGTTTACAGATGACCGTGTCTGCAAGAGTCACCTTCTGGACTGCTGCCCCCATGACATCCTTGCTGG 1330
Query 102 GACGCGCATGGATTTAGGAGAATGTACCAAAATCCACGACTTGGCCCTCCGAGCAGATTATGAGATTGCAAGTA 175
|||||||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||.||||||||||
Sbjct 1331 GACGCGCATGGATTTAGGAGAATGTACCAAAATCCACGACTTGGCTCTTCGAGCAGATTATGAAATTGCAAGTA 1404
Query 176 AAGAAAGAGACCTGTTTTTTGAATTAGATGCAATGGATCACTTGGAGTCCTTTATTGCTGAATGTGATCGGAGA 249
|||||||||||||||||||||||||||||||.|||||||||||.||||||||.|||||.||.||||||||||||
Sbjct 1405 AAGAAAGAGACCTGTTTTTTGAATTAGATGCTATGGATCACTTAGAGTCCTTCATTGCAGAGTGTGATCGGAGA 1478
Query 250 ACTGAGCTCGCCAAGAAGCGGCTGGCAGAAACACAGGAGGAAATCAGTGCGGAAGTTTCTGCAAAGGCAGAAAA 323
||.||.||.|||||.|||||||||||.|||||||||||||||||||||||.||||||||.||.|||||||||||
Sbjct 1479 ACCGAACTTGCCAAAAAGCGGCTGGCTGAAACACAGGAGGAAATCAGTGCAGAAGTTTCGGCTAAGGCAGAAAA 1552
Query 324 AGTACATGAGTTAAATGAAGAAATAGGAAAACTCCTTGCTAAAGCCGAACAGCTAGGGGCTGAAGGTAATGTGG 397
.||||||||.|||||||||||||||||||||||.|||||||||||.||.||||||||.||||||||.|||||||
Sbjct 1553 GGTACATGAATTAAATGAAGAAATAGGAAAACTTCTTGCTAAAGCTGAGCAGCTAGGAGCTGAAGGAAATGTGG 1626
Query 398 ATGAATCCCAGAAGATTCTTATGGAAGTGGAAAAAGTTCGTGCGAAGAAAAAAGAAGCTGAGGAAGAATACAGA 471
|.|||||||||||||||||||||||||||||.|||||||||||.||||||||||||||.|||||||||||.|||
Sbjct 1627 ACGAATCCCAGAAGATTCTTATGGAAGTGGAGAAAGTTCGTGCAAAGAAAAAAGAAGCAGAGGAAGAATATAGA 1700
Query 472 AATTCCATGCCTGCATCCAGTTTTCAGCAGCAAAAGCTGCGTGTCTGCGAGGTCTGTTCAGCCTACCTTGGTCT 545
||||||||||||||||||||||||||.||||||||.||.|||||.||||||||.||||||||.|||||||||||
Sbjct 1701 AATTCCATGCCTGCATCCAGTTTTCAACAGCAAAAACTCCGTGTTTGCGAGGTTTGTTCAGCTTACCTTGGTCT 1774
Query 546 CCATGACAATGACCGTCGCCTGGCAGACCACTTCGGTGGCAAGTTACACTTGGGGTTCATTCAGATCCGAGAGA 619
||||||||||||||||||.||.||||||||||||||.||||||||||||.|||||||||||||||||||.||||
Sbjct 1775 CCATGACAATGACCGTCGGCTTGCAGACCACTTCGGGGGCAAGTTACACCTGGGGTTCATTCAGATCCGGGAGA 1848
Query 620 AGCTTGATCAGTTGAGGAAAACTGTCGCTGAAAAGCAGGAGAAGAGAAATCAGGATCGCTTGAGGAGGAGAGAG 693
|||||||||||||||||||||||||.||||||||.|||||.||.||||||||||||||.||||||||.||||||
Sbjct 1849 AGCTTGATCAGTTGAGGAAAACTGTGGCTGAAAAACAGGAAAAAAGAAATCAGGATCGATTGAGGAGAAGAGAG 1922
Query 694 GAGAGGGAACGGGAGGAGCGTCTGAGCAGGAGGTCGGGATCAAGAACCAGAGATCGCAGGAGGTCACGCTCCCG 767
|||||.||.||.||.|||||.|||.||||||||||.||||||||||||.||||||||||.||||||||||||||
Sbjct 1923 GAGAGAGAGCGAGAAGAGCGCCTGGGCAGGAGGTCTGGATCAAGAACCCGAGATCGCAGAAGGTCACGCTCCCG 1996
Query 768 GGATCGGCGTCGGAGGCGGTCAAGATCTACCTCCCGAGAGCGACGGAAATTGTCCCGGTCCCGGTCCCGAGATA 841
||||||.||.|||||||||||.||.|||||||||.|||||||.|||||.||.|||||.|||.|.||||||||||
Sbjct 1997 GGATCGTCGACGGAGGCGGTCTAGGTCTACCTCCAGAGAGCGGCGGAAGTTTTCCCGTTCCAGATCCCGAGATA 2070
Query 842 GACATCGGCGCCACCGCAGCCGTTCCCGGAGCCACAGCCGGGGACATCGTCGGGCTTCCCGGGACCGAAGTGCG 915
||.|..|||||||.|||||||||||||||||||||||||||||.||.||.|||||||||.|||||||.|||.|.
Sbjct 2071 GATACAGGCGCCATCGCAGCCGTTCCCGGAGCCACAGCCGGGGTCACCGCCGGGCTTCCAGGGACCGGAGTACA 2144
Query 916 AAATACAAGT------TCT-------------------CCAG-------------------------------- 932
|||||||||| ||| ||||
Sbjct 2145 AAATACAAGTAACTACTCTGACTCCTCAGTAACTTCAACCAGGAGTGAGCCCTTTGTCTCTGTGTTCCCAAGAT 2218
Query 933 ------AGAGCGGGCATCC-------------------------AGAGA-----------------GGA----- 953
|||.|.|.||||| ||.|| |||
Sbjct 2219 CTGCTAAGATCTGTCATCCTTGCCTTTTGGCCATTACATCTGGTAGGGACAAGGTTGGGCTTGTGGGGATGCAG 2292
Query 954 GTCCTGGGAG---AGCGGGCGGAGCGAGCGAGGGCCCCCGGACTGGAGGCTTGAGAGC--------TCCAACGG 1016
||.|||||.| ||| |.|.||.|..||..|||.|| ||| .|.|||||| |.||||
Sbjct 2293 GTTCTGGGTGACTAGC------ACCCAGTGTTGGTGCCCCGA--GGA--ATAGAGAGCGGCACCAGTACAAC-- 2354
Query 1017 GAAGATGGCTTCACGGAGGTCAGAAGAGAAGG---AGGCCGGCGAGATC------------------------- 1062
|..||||| |.||.|| |||.|.|.|||.||
Sbjct 2355 --ACTTGGCT---------------GGGATGGGGCAGGGCAGTGAGCTCTCTCACATGGCTCCGCTTTGCTGGG 2411
Query 1063 -------------------------------------------------------------------------- 1062
Sbjct 2412 CTTTACCTACTTTAACTTGGTAAAAAGCAGCTGAGATTTTTGTCTTGATCAGGTTTTGCTTAATTACTTCTCTT 2485
Query 1063 -------------------------------------------------------------------------- 1062
Sbjct 2486 GGACTTTTTTTAAATTTTTGTTTTGAGACAGGCATTCACTTTGTAACTTAAGTTGATTTGAACTCAGGATCCTC 2559
Query 1063 -------------------------------------------------------------------------- 1062
Sbjct 2560 CTGCGTGCTGACATGACAAGTGTTTCTCCCCATGCTTGACCTGTGCCTTTCCATTCCACTTCTTCCATTGTTGT 2633
Query 1063 -------------------------------------------------------------------------- 1062
Sbjct 2634 TACATCCTGGGTCATATTTCACGCGCAAAGCTTTGTTGTATTCCCATTGTTTTGTTTCTGTTACACTGAAAACT 2707
Query 1063 ----------------------------------------------- 1062
Sbjct 2708 TTCCTTATTAAAATTCTTTGCTTTTTATTTACTTTTATTATATGTTT 2754
