Construct: ORF ccsbBroadEn_12253
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000607.1_s300c1, BRDN0000387194
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LUC7L (55692)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55692 | LUC7L | LUC7 like | NM_201412.2 | 95.4% | 94.6% | 3_14del;22_60del |
| 2 | human | 55692 | LUC7L | LUC7 like | XM_005255427.3 | 89.8% | 89.8% | 0_1ins108 |
| 3 | human | 55692 | LUC7L | LUC7 like | XM_017023437.2 | 89.8% | 89.8% | 0_1ins108 |
| 4 | human | 55692 | LUC7L | LUC7 like | XM_011522561.2 | 86.5% | 85.7% | 3_14del;22_60del;156_157ins99 |
| 5 | human | 55692 | LUC7L | LUC7 like | NM_001320226.1 | 83% | 82.2% | 3_14del;22_60del;975_976ins138 |
| 6 | human | 55692 | LUC7L | LUC7 like | NM_018032.5 | 83% | 82.2% | 3_14del;22_60del;975_976ins138 |
| 7 | human | 55692 | LUC7L | LUC7 like | XM_005255429.3 | 80.5% | 80.5% | 0_1ins207 |
| 8 | human | 55692 | LUC7L | LUC7 like | XM_017023438.2 | 80.5% | 80.5% | 0_1ins207 |
| 9 | human | 55692 | LUC7L | LUC7 like | NM_001330420.1 | 76.8% | 76.8% | 0_1ins108;816_817ins138 |
| 10 | human | 55692 | LUC7L | LUC7 like | XM_024450344.1 | 74.1% | 73.3% | (many diffs) |
| 11 | human | 55692 | LUC7L | LUC7 like | XM_017023440.2 | 67.5% | 67.5% | 0_1ins207;717_718ins138 |
| 12 | mouse | 66978 | Luc7l | Luc7-like | NM_028190.3 | 86.1% | 91.6% | (many diffs) |
| 13 | mouse | 66978 | Luc7l | Luc7-like | XM_017317615.1 | 80.3% | 86.7% | (many diffs) |
| 14 | mouse | 66978 | Luc7l | Luc7-like | NM_025881.3 | 76% | 81.1% | (many diffs) |
| 15 | mouse | 66978 | Luc7l | Luc7-like | NR_037905.1 | 51.6% | (many diffs) | |
| 16 | mouse | 66978 | Luc7l | Luc7-like | NR_037906.1 | 33.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1128
- ORF length:
- 1062
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA GATGGGAGAC GAAACCAGAC AGAGGGTCAA GTTTACAGAT GACCGTGTCT 121 GCAAGAGTCA CCTTCTGGAC TGCTGCCCCC ATGACATCCT GGCTGGGACG CGCATGGATT 181 TAGGAGAATG TACCAAAATC CACGACTTGG CCCTCCGAGC AGATTATGAG ATTGCAAGTA 241 AAGAAAGAGA CCTGTTTTTT GAATTAGATG CAATGGATCA CTTGGAGTCC TTTATTGCTG 301 AATGTGATCG GAGAACTGAG CTCGCCAAGA AGCGGCTGGC AGAAACACAG GAGGAAATCA 361 GTGCGGAAGT TTCTGCAAAG GCAGAAAAAG TACATGAGTT AAATGAAGAA ATAGGAAAAC 421 TCCTTGCTAA AGCCGAACAG CTAGGGGCTG AAGGTAATGT GGATGAATCC CAGAAGATTC 481 TTATGGAAGT GGAAAAAGTT CGTGCGAAGA AAAAAGAAGC TGAGGAAGAA TACAGAAATT 541 CCATGCCTGC ATCCAGTTTT CAGCAGCAAA AGCTGCGTGT CTGCGAGGTC TGTTCAGCCT 601 ACCTTGGTCT CCATGACAAT GACCGTCGCC TGGCAGACCA CTTCGGTGGC AAGTTACACT 661 TGGGGTTCAT TCAGATCCGA GAGAAGCTTG ATCAGTTGAG GAAAACTGTC GCTGAAAAGC 721 AGGAGAAGAG AAATCAGGAT CGCTTGAGGA GGAGAGAGGA GAGGGAACGG GAGGAGCGTC 781 TGAGCAGGAG GTCGGGATCA AGAACCAGAG ATCGCAGGAG GTCACGCTCC CGGGATCGGC 841 GTCGGAGGCG GTCAAGATCT ACCTCCCGAG AGCGACGGAA ATTGTCCCGG TCCCGGTCCC 901 GAGATAGACA TCGGCGCCAC CGCAGCCGTT CCCGGAGCCA CAGCCGGGGA CATCGTCGGG 961 CTTCCCGGGA CCGAAGTGCG AAATACAAGT TCTCCAGAGA GCGGGCATCC AGAGAGGAGT 1021 CCTGGGAGAG CGGGCGGAGC GAGCGAGGGC CCCCGGACTG GAGGCTTGAG AGCTCCAACG 1081 GGAAGATGGC TTCACGGAGG TCAGAAGAGA AGGAGGCCGG CGAGATCTGC CCAACTTTCT 1141 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac