Construct: ORF ccsbBroadEn_12253

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000607.1_s300c1, BRDN0000387194
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LUC7L (55692)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55692 LUC7L LUC7 like NM_201412.2 95.4% 94.6% 3_14del;22_60del
2 human 55692 LUC7L LUC7 like XM_005255427.3 89.8% 89.8% 0_1ins108
3 human 55692 LUC7L LUC7 like XM_017023437.2 89.8% 89.8% 0_1ins108
4 human 55692 LUC7L LUC7 like XM_011522561.2 86.5% 85.7% 3_14del;22_60del;156_157ins99
5 human 55692 LUC7L LUC7 like NM_001320226.1 83% 82.2% 3_14del;22_60del;975_976ins138
6 human 55692 LUC7L LUC7 like NM_018032.5 83% 82.2% 3_14del;22_60del;975_976ins138
7 human 55692 LUC7L LUC7 like XM_005255429.3 80.5% 80.5% 0_1ins207
8 human 55692 LUC7L LUC7 like XM_017023438.2 80.5% 80.5% 0_1ins207
9 human 55692 LUC7L LUC7 like NM_001330420.1 76.8% 76.8% 0_1ins108;816_817ins138
10 human 55692 LUC7L LUC7 like XM_024450344.1 74.1% 73.3% (many diffs)
11 human 55692 LUC7L LUC7 like XM_017023440.2 67.5% 67.5% 0_1ins207;717_718ins138
12 mouse 66978 Luc7l Luc7-like NM_028190.3 86.1% 91.6% (many diffs)
13 mouse 66978 Luc7l Luc7-like XM_017317615.1 80.3% 86.7% (many diffs)
14 mouse 66978 Luc7l Luc7-like NM_025881.3 76% 81.1% (many diffs)
15 mouse 66978 Luc7l Luc7-like NR_037905.1 51.6% (many diffs)
16 mouse 66978 Luc7l Luc7-like NR_037906.1 33.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1128
ORF length:
1062
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCA GATGGGAGAC GAAACCAGAC AGAGGGTCAA GTTTACAGAT GACCGTGTCT
121GCAAGAGTCA CCTTCTGGAC TGCTGCCCCC ATGACATCCT GGCTGGGACG CGCATGGATT
181TAGGAGAATG TACCAAAATC CACGACTTGG CCCTCCGAGC AGATTATGAG ATTGCAAGTA
241AAGAAAGAGA CCTGTTTTTT GAATTAGATG CAATGGATCA CTTGGAGTCC TTTATTGCTG
301AATGTGATCG GAGAACTGAG CTCGCCAAGA AGCGGCTGGC AGAAACACAG GAGGAAATCA
361GTGCGGAAGT TTCTGCAAAG GCAGAAAAAG TACATGAGTT AAATGAAGAA ATAGGAAAAC
421TCCTTGCTAA AGCCGAACAG CTAGGGGCTG AAGGTAATGT GGATGAATCC CAGAAGATTC
481TTATGGAAGT GGAAAAAGTT CGTGCGAAGA AAAAAGAAGC TGAGGAAGAA TACAGAAATT
541CCATGCCTGC ATCCAGTTTT CAGCAGCAAA AGCTGCGTGT CTGCGAGGTC TGTTCAGCCT
601ACCTTGGTCT CCATGACAAT GACCGTCGCC TGGCAGACCA CTTCGGTGGC AAGTTACACT
661TGGGGTTCAT TCAGATCCGA GAGAAGCTTG ATCAGTTGAG GAAAACTGTC GCTGAAAAGC
721AGGAGAAGAG AAATCAGGAT CGCTTGAGGA GGAGAGAGGA GAGGGAACGG GAGGAGCGTC
781TGAGCAGGAG GTCGGGATCA AGAACCAGAG ATCGCAGGAG GTCACGCTCC CGGGATCGGC
841GTCGGAGGCG GTCAAGATCT ACCTCCCGAG AGCGACGGAA ATTGTCCCGG TCCCGGTCCC
901GAGATAGACA TCGGCGCCAC CGCAGCCGTT CCCGGAGCCA CAGCCGGGGA CATCGTCGGG
961CTTCCCGGGA CCGAAGTGCG AAATACAAGT TCTCCAGAGA GCGGGCATCC AGAGAGGAGT
1021CCTGGGAGAG CGGGCGGAGC GAGCGAGGGC CCCCGGACTG GAGGCTTGAG AGCTCCAACG
1081GGAAGATGGC TTCACGGAGG TCAGAAGAGA AGGAGGCCGG CGAGATCTGC CCAACTTTCT
1141TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)