Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12261
Subject:
XR_001748807.2
Aligned Length:
3383
Identities:
2848
Gaps:
534

Alignment

Query    1  --------------------------------------------------------------------ATGGAC  6
                                                                                ||||||
Sbjct    1  GTAGCTGCTTAGGCAGCAAGTATGTCAGTGAGGAGACTTGTCACATGCATCAGGACCAGAGATTCAGAATGGAC  74

Query    7  AGTTTAGAAGAACCTCAGAAAAAAGTCTTTAAGGCTCGAAAAACGATGAGAGTGAGTGATCGTCAGCAACTTGA  80
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  AGTTTAGAAGAACCTCAGAAAAAAGTCTTTAAGGCTCGAAAAACGATGAGAGTGAGTGATCGTCAGCAACTTGA  148

Query   81  AGCAGTGTACAAGGTCAAAGAAGAACTGTTGAAAACTGATGTCAAGCTGTTAAATGGCAACCATGAAAATGGAG  154
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AGCAGTGTACAAGGTCAAAGAAGAACTGTTGAAAACTGATGTCAAGCTGTTAAATGGCAACCATGAAAATGGAG  222

Query  155  ATTTGGACCCAACCTCACCTTTGGAAAACATGGATTACATTAAAGACAAGGAAGAGGTGAATGGCATTGAAGAG  228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ATTTGGACCCAACCTCACCTTTGGAAAACATGGATTACATTAAAGACAAGGAAGAGGTGAATGGCATTGAAGAG  296

Query  229  ATTTGTTTTGATCCTGAAGGAAGTAAAGCAGAATGGAAGGAAACACCCTGTATCCTAAGTGTTAATGTAAAAAA  302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ATTTGTTTTGATCCTGAAGGAAGTAAAGCAGAATGGAAGGAAACACCCTGTATCCTAAGTGTTAATGTAAAAAA  370

Query  303  CAAGCAGGATGATGATTTAAATTGTGAACCTTTGTCTCCCCATAATATAACTCCAGAACCAGTCTCTAAACTGC  376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CAAGCAGGATGATGATTTAAATTGTGAACCTTTGTCTCCCCATAATATAACTCCAGAACCAGTCTCTAAACTGC  444

Query  377  CTGCTGAACCAGTTTCTGGTGATCCAGCCCCTGGTGATCTGGATGCCGGAGATCCAGCCTCCGGAGTACTGGCC  450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CTGCTGAACCAGTTTCTGGTGATCCAGCCCCTGGTGATCTGGATGCCGGAGATCCAGCCTCCGGAGTACTGGCC  518

Query  451  TCTGGTGATTCCACCTCTGGTGATCCCACCTCTAGCGAGCCCTCCTCTAGTGATGCTGCCTCTGGTGATGCAAC  524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TCTGGTGATTCCACCTCTGGTGATCCCACCTCTAGCGAGCCCTCCTCTAGTGATGCTGCCTCTGGTGATGCAAC  592

Query  525  CTCTGGTGATGCCCCTTCTGGTGATGTGTCCCCTGGTGATGCCACCTCTGGTGATGCCACTGCTGATGATCTCT  598
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTCTGGTGATGCCCCTTCTGGTGATGTGTCCCCTGGTGATGCCACCTCTGGTGATGCCACTGCTGATGATCTCT  666

Query  599  CCTCTGGTGATCCCACCTCTAGTGATCCCATCCCAGGTGAACCGGTCCCTGTTGAACCCATTTCTGGTGATTGT  672
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CCTCTGGTGATCCCACCTCTAGTGATCCCATCCCAGGTGAACCGGTCCCTGTTGAACCCATTTCTGGTGATTGT  740

Query  673  GCCGCTGATGATATAGCCTCTAGTGAAATAACTTCTGTTGATCTGGCTTCTGGAGCACCAGCTTCCACTGATCC  746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GCCGCTGATGATATAGCCTCTAGTGAAATAACTTCTGTTGATCTGGCTTCTGGAGCACCAGCTTCCACTGATCC  814

Query  747  AGCCTCTGATGATCTGGCCTCTGGTGATCTATCCTCTAGTGAACTGGCCTCTGATGATCTGGCCACTGGTGAAC  820
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGCCTCTGATGATCTGGCCTCTGGTGATCTATCCTCTAGTGAACTGGCCTCTGATGATCTGGCCACTGGTGAAC  888

Query  821  TGGCCTCTGATGAGCTGACTTCTGAATCAACCTTTGATCGTACCTTTGAACCAAAGTCTGTACCAGTTTGTGAA  894
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TGGCCTCTGATGAGCTGACTTCTGAATCAACCTTTGATCGTACCTTTGAACCAAAGTCTGTACCAGTTTGTGAA  962

Query  895  CCAGTTCCTGAAATTGACAATATAGAACCAAGTAGCAATAAAGATGATGATTTTCTTGAAAAAAATGGAGCTGA  968
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CCAGTTCCTGAAATTGACAATATAGAACCAAGTAGCAATAAAGATGATGATTTTCTTGAAAAAAATGGAGCTGA  1036

Query  969  TGAAAAATTAGAGCAAATTCAGAGTAAAGACTCATTGGATGAGAAAAATAAAGCTGATAATAATATTGATGCTA  1042
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGAAAAATTAGAGCAAATTCAGAGTAAAGACTCATTGGATGAGAAAAATAAAGCTGATAATAATATTGATGCTA  1110

Query 1043  ATGAAGAAACTCTAGAAACAGATGATACAACTATTTGTTCAGATCGACCTCCTGAAAATGAAAAGAAGGTAGAG  1116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  ATGAAGAAACTCTAGAAACAGATGATACAACTATTTGTTCAGATCGACCTCCTGAAAATGAAAAGAAGGTAGAG  1184

Query 1117  GAAGATATTATCACAGAGCTTGCTCTTGGAGAAGATGCTATATCTAGCAGTATGGAAATTGACCAAGGTGAAAA  1190
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GAAGATATTATCACAGAGCTTGCTCTTGGAGAAGATGCTATATCTAGCAGTATGGAAATTGACCAAGGTGAAAA  1258

Query 1191  GAATGAAGATGAAACTTCTGCAGATCTTGTAGAAACGATTAATGAAAATGTTATTGAAGATAACAAAAGTGAGA  1264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GAATGAAGATGAAACTTCTGCAGATCTTGTAGAAACGATTAATGAAAATGTTATTGAAGATAACAAAAGTGAGA  1332

Query 1265  ATATCTTAGAAAATACAGACTCTATGGAGACAGATGAAATCATTCCTATTTTGGAAAAGCTTGCACCTTCTGAG  1338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  ATATCTTAGAAAATACAGACTCTATGGAGACAGATGAAATCATTCCTATTTTGGAAAAGCTTGCACCTTCTGAG  1406

Query 1339  GATGAACTTACTTGCTTTTCTAAAACATCTCTCCTTCCAATCGATGAGACAAATCCAGATTTGGAAGAGAAAAT  1412
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GATGAACTTACTTGCTTTTCTAAAACATCTCTCCTTCCAATCGATGAGACAAATCCAGATTTGGAAGAGAAAAT  1480

Query 1413  GGAAAGTTCTTTTGGTTCACCATCTAAACAAGAAAGTAGTGAGAGTTTGCCAAAAGAAGCCTTTCTGGTCCTCT  1486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GGAAAGTTCTTTTGGTTCACCATCTAAACAAGAAAGTAGTGAGAGTTTGCCAAAAGAAGCCTTTCTGGTCCTCT  1554

Query 1487  CTGATGAAGAGGATATTTCGGGTGAAAAAGATGAGTCTGAAGTTATATCGCAAAATGAAACGTGCTCTCCAGAA  1560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CTGATGAAGAGGATATTTCGGGTGAAAAAGATGAGTCTGAAGTTATATCGCAAAATGAAACGTGCTCTCCAGAA  1628

Query 1561  GTAGAAAGTAATGAAAAGGACAACAGACCTGAGGAAGAAGAGCAAGTAATACATGAAGATGATGAAAGACCTTC  1634
            |||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GTAGAAAGTAATGAAAAGGACAACAAACCTGAGGAAGAAGAGCAAGTAATACATGAAGATGATGAAAGACCTTC  1702

Query 1635  TGAGAAAAATGAATTTTCTAGACGAAAACGTTCTAAATCAGAAGACATGGACAATGTACAGTCTAAACGTCGTC  1708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TGAGAAAAATGAATTTTCTAGACGAAAACGTTCTAAATCAGAAGACATGGACAATGTACAGTCTAAACGTCGTC  1776

Query 1709  GATATATGGAAGAAGAATATGAGGCAGAATTTCAAGTAAAGATTACAGCCAAAGGAGACATTAACCAGAAACTT  1782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GATATATGGAAGAAGAATATGAGGCAGAATTTCAAGTAAAGATTACAGCCAAAGGAGACATTAACCAGAAACTT  1850

Query 1783  CAAAAGGTTATACAGTGGTTGCTGGAAGAAAAATTGTGTGCGCTGCAGTGTGCTGTATTTGATAAGACTTTGGC  1856
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CAAAAGGTTATACAGTGGTTGCTGGAAGAAAAATTGTGTGCGCTGCAGTGTGCTGTATTTGATAAGACTTTGGC  1924

Query 1857  AGAATTGAAAACACGAGTGGAAAAGATTGAATGTAACAAGAGGCATAAAACAGTTCTCACTGAACTACAGGCCA  1930
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  AGAATTGAAAACACGAGTGGAAAAGATTGAATGTAACAAGAGGCATAAAACAGTTCTCACTGAACTACAGGCCA  1998

Query 1931  AGATAGCCAGGTTAACCAAACGCTTTGAAGCAGCCAAAGAAGATCTTAAGAAAAGACATGAACATCCACCCAAC  2004
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  AGATAGCCAGGTTAACCAAACGCTTTGAAGCAGCCAAAGAAGATCTTAAGAAAAGACATGAACATCCACCCAAC  2072

Query 2005  CCACCAGTATCACCAGGAAAAACTGTAAATGATGTCAACAGCAATAATAACATGTCTTACAGAAATGCAGGCAC  2078
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
Sbjct 2073  CCACCAGTATCACCAGGAAAAACTGTAAATGATGTCAACAGCAATAATAACATGTCT-----------------  2129

Query 2079  AGTGAGACAGATGCTGGAGTCCAAAAGAAATGTAAGCGAGAGTGCACCACCATCCTTTCAAACTCCTGTGAATA  2152
                                                                                    ||
Sbjct 2130  ------------------------------------------------------------------------TA  2131

Query 2153  CAGTATCTTCAACCAATCTTGTCACTCCTCCAGCAGTTGTCAGTAGTCAACCTAAATTGCAGACTCCAGTGACT  2226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2132  CAGTATCTTCAACCAATCTTGTCACTCCTCCAGCAGTTGTCAGTAGTCAACCTAAATTGCAGACTCCAGTGACT  2205

Query 2227  TCGGGTTCCCTCACAGCAACGTCAGTTCTTCCTGCACCCAATACAGCTACTGTAGTTGCTACTACTCAGGTGCC  2300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2206  TCGGGTTCCCTCACAGCAACGTCAGTTCTTCCTGCACCCAATACAGCTACTGTAGTTGCTACTACTCAGGTGCC  2279

Query 2301  TAGTGGAAATCCCCAGCCTACAATCTCTTTACAGCCTTTGCCAGTGATTTTGCATGTACCTGTTGCAGTATCCT  2374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2280  TAGTGGAAATCCCCAGCCTACAATCTCTTTACAGCCTTTGCCAGTGATTTTGCATGTACCTGTTGCAGTATCCT  2353

Query 2375  CCCAGCCTCAGCTTCTACAGAGCCATCCAGGGACTTTGGTGACTAATCAACCATCTGGCAATGTTGAATTCATT  2448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2354  CCCAGCCTCAGCTTCTACAGAGCCATCCAGGGACTTTGGTGACTAATCAACCATCTGGCAATGTTGAATTCATT  2427

Query 2449  TCTGTGCAAAGCCCACCTACAGTGAGTGGTCTTACCAAAAATCCAGTATCCTTGCCATCCTTGCCAAATCCCAC  2522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2428  TCTGTGCAAAGCCCACCTACAGTGAGTGGTCTTACCAAAAATCCAGTATCCTTGCCATCCTTGCCAAATCCCAC  2501

Query 2523  TAAACCAAACAACGTTCCTTCTGTGCCCAGTCCTAGTATTCAAAGGAACCCTACTGCCAGTGCTGCACCATTGG  2596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2502  TAAACCAAACAACGTTCCTTCTGTGCCCAGTCCTAGTATTCAAAGGAACCCTACTGCCAGTGCTGCACCATTGG  2575

Query 2597  GAACAACACTTGCTGTGCAGGCTGTTCCAACAGCACACTCTATTGTACAAGCCACAAGGACTTCTTTACCCACA  2670
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2576  GAACAACACTTGCTGTGCAGGCTGTTCCAACAGCACACTCTATTGTACAAGCCACAAGGACTTCTTTACCCACA  2649

Query 2671  GTGGGCCCATCAGGACTCTATAGTCCATCAACTAATCGAGGTCCTATACAGATGAAAATTCCAATTTCTGCATT  2744
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2650  GTGGGCCCATCAGGACTCTATAGTCCATCAACTAATCGAGGTCCTATACAGATGAAAATTCCAATTTCTGCATT  2723

Query 2745  TAGTACTTCGTCTGCTGCAGAACAGAACAGCAATACCACCCCAAGAATTGAAAACCAGACAAACAAAACAATAG  2818
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2724  TAGTACTTCGTCTGCTGCAGAACAGAACAGCAATACCACCCCAAGAATTGAAAACCAGACAAACAAAACAATAG  2797

Query 2819  ATGCTTCTGTCAGTAAGAAAGCAGCTGATAGCACATCACAGTGTGGAAAAGCCACTGGCAGTGATTCAAGTGGT  2892
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2798  ATGCTTCTGTCAGTAAGAAAGCAGCTGATAGCACATCACAGTGTGGAAAAGCCACTGGCAGTGATTCAAGTGGT  2871

Query 2893  GTCATTGATCTCACAATGGATGATGAAGAGAGTGGAGCTTCACAAGACCCCAAAAAACTAAATCACACTCCTGT  2966
            ||||||||||||||||||||||||||||||||||||||||||||||                            
Sbjct 2872  GTCATTGATCTCACAATGGATGATGAAGAGAGTGGAGCTTCACAAG----------------------------  2917

Query 2967  ATCAACCATGAGTTCTTCTCAGCCTGTGTCACGACCATTGCAACCCATACAACCAGCACCGCCTCTTCAACCAT  3040
                                                                                      
Sbjct 2918  --------------------------------------------------------------------------  2917

Query 3041  CTGGGGTGCCAACAAGTGGACCATCTCAGACCACCATACACTTACTACCTACAGCTCCAACTACCGTGAATGTA  3114
                                                                                      
Sbjct 2918  --------------------------------------------------------------------------  2917

Query 3115  ACACATCGTCCAGTAACTCAGGTGACCACAAGACTCCCTGTACCAAGAGCTCCTGCAAACCACCAGGTGGTTTA  3188
                                                                                      
Sbjct 2918  --------------------------------------------------------------------------  2917

Query 3189  TACAACTCTTCCTGCACCACCAGCTCAGGCTCCCTTGCGAGGAACTGTTATGCAGGCTCCTGCTGTTCGGCAGG  3262
                                                                                      
Sbjct 2918  --------------------------------------------------------------------------  2917

Query 3263  TCAATCCCCAAAATAGTAAGAGATTTTTCTTGTATATGGCCCCAAGATACATG  3315
                                                                 
Sbjct 2918  -----------------------------------------------------  2917

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