Construct: ORF ccsbBroadEn_12261

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007580.1_s300c1, BRDN0000457331
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATF7IP (55729)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55729 ATF7IP activating transcription fa... NM_001286515.2 99.9% 99.9% 1586A>G
2 human 55729 ATF7IP activating transcription fa... NM_001286514.2 86.7% 86.1% (many diffs)
3 human 55729 ATF7IP activating transcription fa... XM_017019639.1 86.7% 86.1% (many diffs)
4 human 55729 ATF7IP activating transcription fa... NM_018179.4 86.6% 86% (many diffs)
5 human 55729 ATF7IP activating transcription fa... XM_006719108.3 86.6% 86% (many diffs)
6 human 55729 ATF7IP activating transcription fa... XM_006719109.3 86.6% 86% (many diffs)
7 human 55729 ATF7IP activating transcription fa... XM_011520754.3 86.6% 86% (many diffs)
8 human 55729 ATF7IP activating transcription fa... XM_011520755.2 86.6% 86% (many diffs)
9 human 55729 ATF7IP activating transcription fa... XM_017019638.1 86.6% 86% (many diffs)
10 human 55729 ATF7IP activating transcription fa... XM_005253424.4 86.2% 85.5% (many diffs)
11 human 55729 ATF7IP activating transcription fa... NM_181352.2 86.1% 85.5% (many diffs)
12 human 55729 ATF7IP activating transcription fa... XM_011520756.3 85.9% 85.7% (many diffs)
13 human 55729 ATF7IP activating transcription fa... XR_001748807.2 84.1% (many diffs)
14 human 55729 ATF7IP activating transcription fa... XR_001748806.2 84.1% (many diffs)
15 human 55729 ATF7IP activating transcription fa... XR_001748809.2 81.1% (many diffs)
16 human 55729 ATF7IP activating transcription fa... XR_001748808.2 36.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3384
ORF length:
3315
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGACAGTTTA GAAGAACCTC AGAAAAAAGT CTTTAAGGCT CGAAAAACGA
121TGAGAGTGAG TGATCGTCAG CAACTTGAAG CAGTGTACAA GGTCAAAGAA GAACTGTTGA
181AAACTGATGT CAAGCTGTTA AATGGCAACC ATGAAAATGG AGATTTGGAC CCAACCTCAC
241CTTTGGAAAA CATGGATTAC ATTAAAGACA AGGAAGAGGT GAATGGCATT GAAGAGATTT
301GTTTTGATCC TGAAGGAAGT AAAGCAGAAT GGAAGGAAAC ACCCTGTATC CTAAGTGTTA
361ATGTAAAAAA CAAGCAGGAT GATGATTTAA ATTGTGAACC TTTGTCTCCC CATAATATAA
421CTCCAGAACC AGTCTCTAAA CTGCCTGCTG AACCAGTTTC TGGTGATCCA GCCCCTGGTG
481ATCTGGATGC CGGAGATCCA GCCTCCGGAG TACTGGCCTC TGGTGATTCC ACCTCTGGTG
541ATCCCACCTC TAGCGAGCCC TCCTCTAGTG ATGCTGCCTC TGGTGATGCA ACCTCTGGTG
601ATGCCCCTTC TGGTGATGTG TCCCCTGGTG ATGCCACCTC TGGTGATGCC ACTGCTGATG
661ATCTCTCCTC TGGTGATCCC ACCTCTAGTG ATCCCATCCC AGGTGAACCG GTCCCTGTTG
721AACCCATTTC TGGTGATTGT GCCGCTGATG ATATAGCCTC TAGTGAAATA ACTTCTGTTG
781ATCTGGCTTC TGGAGCACCA GCTTCCACTG ATCCAGCCTC TGATGATCTG GCCTCTGGTG
841ATCTATCCTC TAGTGAACTG GCCTCTGATG ATCTGGCCAC TGGTGAACTG GCCTCTGATG
901AGCTGACTTC TGAATCAACC TTTGATCGTA CCTTTGAACC AAAGTCTGTA CCAGTTTGTG
961AACCAGTTCC TGAAATTGAC AATATAGAAC CAAGTAGCAA TAAAGATGAT GATTTTCTTG
1021AAAAAAATGG AGCTGATGAA AAATTAGAGC AAATTCAGAG TAAAGACTCA TTGGATGAGA
1081AAAATAAAGC TGATAATAAT ATTGATGCTA ATGAAGAAAC TCTAGAAACA GATGATACAA
1141CTATTTGTTC AGATCGACCT CCTGAAAATG AAAAGAAGGT AGAGGAAGAT ATTATCACAG
1201AGCTTGCTCT TGGAGAAGAT GCTATATCTA GCAGTATGGA AATTGACCAA GGTGAAAAGA
1261ATGAAGATGA AACTTCTGCA GATCTTGTAG AAACGATTAA TGAAAATGTT ATTGAAGATA
1321ACAAAAGTGA GAATATCTTA GAAAATACAG ACTCTATGGA GACAGATGAA ATCATTCCTA
1381TTTTGGAAAA GCTTGCACCT TCTGAGGATG AACTTACTTG CTTTTCTAAA ACATCTCTCC
1441TTCCAATCGA TGAGACAAAT CCAGATTTGG AAGAGAAAAT GGAAAGTTCT TTTGGTTCAC
1501CATCTAAACA AGAAAGTAGT GAGAGTTTGC CAAAAGAAGC CTTTCTGGTC CTCTCTGATG
1561AAGAGGATAT TTCGGGTGAA AAAGATGAGT CTGAAGTTAT ATCGCAAAAT GAAACGTGCT
1621CTCCAGAAGT AGAAAGTAAT GAAAAGGACA ACAGACCTGA GGAAGAAGAG CAAGTAATAC
1681ATGAAGATGA TGAAAGACCT TCTGAGAAAA ATGAATTTTC TAGACGAAAA CGTTCTAAAT
1741CAGAAGACAT GGACAATGTA CAGTCTAAAC GTCGTCGATA TATGGAAGAA GAATATGAGG
1801CAGAATTTCA AGTAAAGATT ACAGCCAAAG GAGACATTAA CCAGAAACTT CAAAAGGTTA
1861TACAGTGGTT GCTGGAAGAA AAATTGTGTG CGCTGCAGTG TGCTGTATTT GATAAGACTT
1921TGGCAGAATT GAAAACACGA GTGGAAAAGA TTGAATGTAA CAAGAGGCAT AAAACAGTTC
1981TCACTGAACT ACAGGCCAAG ATAGCCAGGT TAACCAAACG CTTTGAAGCA GCCAAAGAAG
2041ATCTTAAGAA AAGACATGAA CATCCACCCA ACCCACCAGT ATCACCAGGA AAAACTGTAA
2101ATGATGTCAA CAGCAATAAT AACATGTCTT ACAGAAATGC AGGCACAGTG AGACAGATGC
2161TGGAGTCCAA AAGAAATGTA AGCGAGAGTG CACCACCATC CTTTCAAACT CCTGTGAATA
2221CAGTATCTTC AACCAATCTT GTCACTCCTC CAGCAGTTGT CAGTAGTCAA CCTAAATTGC
2281AGACTCCAGT GACTTCGGGT TCCCTCACAG CAACGTCAGT TCTTCCTGCA CCCAATACAG
2341CTACTGTAGT TGCTACTACT CAGGTGCCTA GTGGAAATCC CCAGCCTACA ATCTCTTTAC
2401AGCCTTTGCC AGTGATTTTG CATGTACCTG TTGCAGTATC CTCCCAGCCT CAGCTTCTAC
2461AGAGCCATCC AGGGACTTTG GTGACTAATC AACCATCTGG CAATGTTGAA TTCATTTCTG
2521TGCAAAGCCC ACCTACAGTG AGTGGTCTTA CCAAAAATCC AGTATCCTTG CCATCCTTGC
2581CAAATCCCAC TAAACCAAAC AACGTTCCTT CTGTGCCCAG TCCTAGTATT CAAAGGAACC
2641CTACTGCCAG TGCTGCACCA TTGGGAACAA CACTTGCTGT GCAGGCTGTT CCAACAGCAC
2701ACTCTATTGT ACAAGCCACA AGGACTTCTT TACCCACAGT GGGCCCATCA GGACTCTATA
2761GTCCATCAAC TAATCGAGGT CCTATACAGA TGAAAATTCC AATTTCTGCA TTTAGTACTT
2821CGTCTGCTGC AGAACAGAAC AGCAATACCA CCCCAAGAAT TGAAAACCAG ACAAACAAAA
2881CAATAGATGC TTCTGTCAGT AAGAAAGCAG CTGATAGCAC ATCACAGTGT GGAAAAGCCA
2941CTGGCAGTGA TTCAAGTGGT GTCATTGATC TCACAATGGA TGATGAAGAG AGTGGAGCTT
3001CACAAGACCC CAAAAAACTA AATCACACTC CTGTATCAAC CATGAGTTCT TCTCAGCCTG
3061TGTCACGACC ATTGCAACCC ATACAACCAG CACCGCCTCT TCAACCATCT GGGGTGCCAA
3121CAAGTGGACC ATCTCAGACC ACCATACACT TACTACCTAC AGCTCCAACT ACCGTGAATG
3181TAACACATCG TCCAGTAACT CAGGTGACCA CAAGACTCCC TGTACCAAGA GCTCCTGCAA
3241ACCACCAGGT GGTTTATACA ACTCTTCCTG CACCACCAGC TCAGGCTCCC TTGCGAGGAA
3301CTGTTATGCA GGCTCCTGCT GTTCGGCAGG TCAATCCCCA AAATAGTAAG AGATTTTTCT
3361TGTATATGGC CCCAAGATAC ATGTTGCCAA CTTTCTTGTA CAAAGTTGGc attataagaa
3421agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)