Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12273
- Subject:
- NM_053072.3
- Aligned Length:
- 4201
- Identities:
- 979
- Gaps:
- 3077
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGACTTCTGCCGCGGAGCTTAAGAAGCCACCATTGGCTCCCAAGCCAAAGTTAGTGGGGACCAATAATAAGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACCTCCCCCTCCTATTGCACCTAAACCGGACATTGGCAGTGCTAGTGTTCCACGGTTAACGAAGAAGACCAAAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGCAATTGCGCCAAAACCAAAAGTCCCGACAAACTCAGTTGTTCAAGACATTAAGCATCCACCCTCAAAGAAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTACTTTGAACCTGGAGGAAAGGGAGCCAGAATTACCCGAGAGCACTGGCAAGTCTAATTGCAAGGATGTCAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGATCCACACAGTGATTATATTTTACCAACGTGTTCCTGCAGTTCTGGGTGTATTCACGAGCCTAGGACTCGAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAACCCAGTGTGTAGAGCAGCTTGTTTTAGAGCCTCTGGGAATGAAGGAAAATTTAGAGAATAGTAAAAATGGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GAGTCCTCAAAAAGGGGGAGTAGCTGGGATTCAAGCAGCGAAAAGTGCCGGGGCCAGAGTGGAGTTGTTTTAAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGCAAGCATCTTAGAAGAGAAGCTCAAAGAGGTCCTGACGCAGCAGCGATCACCTTGTGGTTCCCCGGGGAGGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ACAGAGCTCCAAAAAAACCAGAAATGAATGGTGACCATAGTTGCACCAGGCAGATCAGAATTGAATTTGCAGAT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTGTCTTCTTCCCTGACCGGCTTTGAAAAAGTTCCCGCTCATCACAACTGCCACCCACAACTTCCTAGGGATGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATCTCAGACTCTCAAGACTTGTCAAGATGGCAGTGCAGAGAGCCGTGGTCACACTGATTCATGTGAACCGGAGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACAAAAGAGTGGCTTCAGATGGAATTAGTCAGAAGACAGAGGTCAAAGGTCTCGGTCCTTTAGAAATCCACTTA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTACCGTATACCTCAAAGTTTCCAACTCCCAAGCCCAGGAAGACACACGCAGCTGCTCGTCTTCGCCGCCAGAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GCATGTAGATACTCCTGGTGAAAGCACTGAAGAGCCAGGGAACTCAAACAATGGCTCTTCTTGCCTCCTGGAGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATTATTGTTTGAAAAACAATAAAGTCAGTGTTCTTCGTCAGAATGCTTTGTATAACCAGGGACCAGTGGACGAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GTGAGGCCAGCAAACCAGAGGGCACTGACAGGGGATTCCAACAGTGGCGGACAGGACTCAGTCGGCTCACAGAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGCTGTGCAGCAGCAAACGCCTTCTTTAGATACAGATTCTAGTTTGACTTCTGACAGCAGTGGTTCTGGCGTGT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CACCTGCTGTGGACAAAGAGACTACTTACACACAGTGCAGTACTCAGCCTTTGAGCTTGCCTAAGCAAGTCACA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TCAGCCTGCACTGACCAGCCACCAGCTACCTGTAACCCGGAAGTGTCAGCTCCTCCCATACAAAAGGAATCTTC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTCCTCGAGAATCATTCCCAAAAAACCTCAAAGACACAGCTTGCCTGCAGCAGGGGTGCTTAAAAAGGCTGCTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CGGAGGAGCTTGTAGAAAAGAGCTCTTCAGGTAAGGAGACAAATGTCGAGAAAGGTCTGCACAGAAACTACCTT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CACCATCCGGGGCCCCCAAACCATGGCGCGTCAGCATCACCCTTTGATATGCCCAACCCGACTTCAGAGAAGCC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AGTGTGGAAGTTACCTCATCCTATTCTACCTTTTTCAGGGAGCCCAGAGGCCTTGAAACGCGTCACTTTATCCT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TAAATAACGAGCCTTCCGTTTCCCTAACCAAGCCAAGAGCAAAATCCCTGTCTGCCGTGGATGCGGACCGGTGT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AACAAGCCTTGCAAAGACCCTCCGAAGAAAACTTCTTTTAAAAAGTTGATCAATGTGAAACTGTCCATTGGCTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CATAAAGAGCGACTTTCAGAAAATTAGGTCGAAAAGCTGCCAACACGGGGATGTCTCTGCAGGACATCCGCTCG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CTAGAGAGCCAAAAGGACTTGAAAGTGATTGGCAAGGTTTGGCTACAGGAGAAGAGAAGAGAAGTAAGCCCACG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AAGGCACATTCTGCAGAAAACTGCAGCCTGGAATCTCAAAAGGTGAAGTCCTGGGGCCAGAGCAGTGCAGTTAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CGGTCAGAGGGCGGAGTCTTTGGATGACCGGATTCTCTCCAGGCACACGTCCTGTACAGGCGACTTCGGGCCAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AGTATGAAAATGTCCGCCATTATGAGGAGATACCCGAGTATGAGAATTTGCCCTTTGTCATGGCTGGAAGGAAC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ACTCCGGACTTGGGATGGCAGAACTCCAGCAGTGTGGAGGACACTGATGCAAGTCTATATGAAGTAGAAGAGCC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTACAATGCTCCAGATGGCCAGCTGCAACTTGATCCTAGACATCAGCCTTGCAGTTCTGGAACATCCCAGGAGG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GGAAGGATGCTCTCCATCTTGGCCTCAGTGACCTGCCTTCTGATGAGGAAGTCATCAATAGTTCTGATGAAGAT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GATGTCAGCTCCGAGTCCAGTAAAGGCGAGCCAGACCCCCTGGAGGATAAACAGGATGAAGATGCTGGGATGAA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AAGCAAAGTTCATCATATTGCCAAGGAGATCATGAGCTCCGAGAAAGTGTTTGTGGATGTGTTAAAGCTTTTGC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATATTGACTTCCGGGGTGCTGTAGCCCATGCATCCAGGCAGCTCGGGAAGCCCGTGATTGAGGACCGGATCCTT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AACCAGATCCTGTACTACCTGCCTCAGCTGTACGAGCTCAACCGGGATCTCCTGAAGGAACTGGAAGAGCGAAT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GCTCACCTGGACAGAACAACAAAGAATTGCTGATATCTTTGTAAAGAAGGGGCCATACTTAAAAATGTATTCCA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CATACATCAAAGAATTTGATAAGAACGTAGCTTTGCTGGATGAGCAGTGCAAGAAAAATCCAGGATTTGCTGCA 2886
Query 1 ------------------ATGAGCCCTCGCTGTGCTAATCTGGCCCTCAAGCACTACCTGCTCAAGCCGGTTCA 56
|||||||||||.|||||.||.||||||||.||||||||||||||.|||||.|||||
Sbjct 2887 GTTGTCAGAGAATTCGAGATGAGCCCTCGATGTGCCAACCTGGCCCTGAAGCACTACCTGCTAAAGCCAGTTCA 2960
Query 57 GAGGATCCCCCAGTACAGGCTGTTGCTGACAGATTATTTGAAGAATCTCATAGAAGATGCTGGAGATTACAGAG 130
|||||||||.||||||||||||.|.|||||||||||.||.|||||.||..|||||||..|||.||||.||||||
Sbjct 2961 GAGGATCCCTCAGTACAGGCTGCTACTGACAGATTACTTAAAGAACCTTCTAGAAGACTCTGTAGATCACAGAG 3034
Query 131 ACACTCAAGATGCCCTTGCTGTTGTTGTAGAGGTAGCCAACCACGCCAATGACACCATGAAGCAAGGAGACAAC 204
||||.|||||||||||.||||||||..||||||||||.|||||.|||||||||||||||||||||||.||||||
Sbjct 3035 ACACCCAAGATGCCCTGGCTGTTGTCATAGAGGTAGCTAACCATGCCAATGACACCATGAAGCAAGGGGACAAC 3108
Query 205 TTTCAGAAACTTATGCAAATTCAGTACAGCTTAAATGGACACCATGAAATTGTGCAGCCTGGTCGGGTTTTTCT 278
||||||||.||.|||||.||||||||||||||||.|||||||||||||||||||||.||.||.|||||||||||
Sbjct 3109 TTTCAGAAGCTCATGCAGATTCAGTACAGCTTAAGTGGACACCATGAAATTGTGCAACCCGGGCGGGTTTTTCT 3182
Query 279 CAAAGAAGGAATTCTGATGAAGCTGTCTCGGAAAGTGATGCAACCTCGAATGTTTTTCCTGTTTAATGATGCCC 352
.||||||||.|..|||||||||||||||||||||||.|||||.||.||.|||||||||||||||||.|||||.|
Sbjct 3183 TAAAGAAGGCACCCTGATGAAGCTGTCTCGGAAAGTCATGCAGCCCCGGATGTTTTTCCTGTTTAACGATGCTC 3256
Query 353 TGCTGTATACAACACCAGTGCAGTCTGGGATGTATAAACTGAACAACATGCTCTCACTGGCTGGAATGAAGGTC 426
|.||.||.||.|||||..||||||||||||||||.||||||||||||||||||||.||||||||||||||||||
Sbjct 3257 TTCTCTACACCACACCCATGCAGTCTGGGATGTACAAACTGAACAACATGCTCTCGCTGGCTGGAATGAAGGTC 3330
Query 427 AGAAAACCTACCCAAGAAGCCTATCAGAATGAATTAAAGATTGAAAGTGTAGAACGTTCCTTCATTCTCTCAGC 500
||||||||||||||.||.||.||||||||.||.||||||||||||||||||||.|||||.|||||.||||||||
Sbjct 3331 AGAAAACCTACCCAGGAGGCATATCAGAACGAGTTAAAGATTGAAAGTGTAGAGCGTTCTTTCATCCTCTCAGC 3404
Query 501 CAGTTCTGCCACAGAAAGGGATGAATGGCTAGAAGCGATTTCCAGGGCAATAGAAGAGTATGCCAAGAAAAGAA 574
.|||||||||.|||||||.|||||.|||||.||.||.||.|||||..|.|||||||||||||||||||||||||
Sbjct 3405 TAGTTCTGCCGCAGAAAGAGATGACTGGCTGGAGGCCATATCCAGCTCCATAGAAGAGTATGCCAAGAAAAGAA 3478
Query 575 TCACCTTCTGTCCTAGTAGGAGTCTTGATGAGGCAGACTCAGAAAATAAAGAAGAAGTTAGTCCTCTTGGATCG 648
||||.|||||.||.||.|||||||||||.||| ||||||||||..||||||||||||||.||.||.||..|.
Sbjct 3479 TCACATTCTGCCCCAGCAGGAGTCTTGACGAG---GACTCAGAAAGGAAAGAAGAAGTTAGCCCCCTCGGGGCA 3549
Query 649 AAGGCTCCCATCTGGATTCCTGATACCAGAGCCACAATGTGTATGATCTGCACAAGCGAATTCACTCTCACCTG 722
|||||||||||||||||.||.||.|||||||||||.|||||||||||.||||||||.||||||||.||.|||||
Sbjct 3550 AAGGCTCCCATCTGGATCCCAGACACCAGAGCCACCATGTGTATGATTTGCACAAGTGAATTCACCCTGACCTG 3623
Query 723 GAGACGACACCACTGCCGGGCCTGTGGAAAGATTGTATGCCAAGCTTGTTCGTCTAATAAGTATGGCTTAGATT 796
||||.|||||||||||.||||||||||.||||||||.|||||||||||.||.||.||.||||||||||||||||
Sbjct 3624 GAGAAGACACCACTGCAGGGCCTGTGGGAAGATTGTGTGCCAAGCTTGCTCATCAAACAAGTATGGCTTAGATT 3697
Query 797 ACCTGAAAAATCAACCAGCAAGAGTATGTGAACATTGTTTCCAAGAACTGCAGAAATTAGATCACCAGCACTCC 870
||||||||...||||..||||||||.||.||.||.||.||||||||.||.|||||||||||||||||||..||.
Sbjct 3698 ACCTGAAAGGGCAACTGGCAAGAGTGTGCGAGCACTGCTTCCAAGAGCTACAGAAATTAGATCACCAGCTGTCG 3771
Query 871 CCTAGGATTGGATCTCCTGGAAATCACAAATCTCCTTCAAGTGCCTTATCATCAGTCTTACATAGCATTCCATC 944
||||||.||||.|||||.|||||||||||.|||||||||||||||||.||.|||||||||||||||||.||.||
Sbjct 3772 CCTAGGGTTGGGTCTCCCGGAAATCACAAGTCTCCTTCAAGTGCCTTGTCGTCAGTCTTACATAGCATCCCGTC 3845
Query 945 AGGGAGGAAACAGAAAAAAATCCCAGCTGCTCTCAAAGAAGTATCAGCAAACACAGAGGATTCTTCTATGAGTG 1018
|||||||||.|||||.||||||||.|||||||||||||||||.||||||||||||||.||.||..|||||||.|
Sbjct 3846 AGGGAGGAAGCAGAAGAAAATCCCCGCTGCTCTCAAAGAAGTGTCAGCAAACACAGAAGACTCCACTATGAGCG 3919
Query 1019 GCTACTTGTACAGATCAAAGGGCAATAAAAAACCCTGGAAACACTTTTGGTTTGTCATAAAAAATAAAGTACTA 1092
|||||.|.||||||||.|||||||.||||||.||.|||||||||||.|||||||||||.|||||.||||||||.
Sbjct 3920 GCTACCTCTACAGATCCAAGGGCAGTAAAAAGCCATGGAAACACTTATGGTTTGTCATCAAAAACAAAGTACTC 3993
Query 1093 TATACATATGCTGCAAGTGAGGTA------AGATCTG--AAATC------------------------------ 1128
||.||||||||||||||.|||| | ||.|.|| ||.||
Sbjct 3994 TACACATATGCTGCAAGCGAGG-ACGTGGCAGCTTTGGAAAGTCAGCCTTTATTAGGCTTCACCGTCACTCTAG 4066
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4067 TCAAGGATGAGAACTCAGAGTCTAAAGTGTTTCAGCTGCTGCACAAAGGCATGGTGTTTTACGTATTTAAGGCA 4140
Query 1129 --------------------------------------------------------- 1128
Sbjct 4141 GACGATGCCCACTCCACGCAGAGGTGGATAGACGCATTTCAGGAAGGCACAGTATTG 4197
