Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12306
- Subject:
- XR_001782322.1
- Aligned Length:
- 4269
- Identities:
- 1358
- Gaps:
- 2847
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGGCAGGGAACTTGAACCGGTCCAGCCTGTTTAAACCGAAAGGACAGAGATCCTGTCTGTTCAATGTAAAAAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAAAAAAGAAGAAGAAGAAAAAAATCACATCAGACCGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAAGAAGAAGAGGGAGAGAGAGAGAGAGAGAGAGAAGAGAGAAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGAGAGAGAAGAGAGAGAGAAGAGAGAAATAGAACGAGAGCCCAGAGCAGAGCAAGGTGTAGGAAACCAAAGGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAGAGAACCCGAGTGTGTGCGTGTGTGTATGAGTGTGTGTGAGTGTGTGTGTGTGTGTGCGCGCGTGTGTGAGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGAGAGTGTGTGTGCGTGTGTGTGTGTGTGTGAGTGTGTGTGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGCGTGTGCGTGTGTGAGCGCGAGCGAGCGAGTGAGGGAGAGGAGCGAGAGAGTGCGAGCGAGAAAGAATAAA 518
Query 1 -----------------ATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCAAGCCTCAGT 57
|||||||||||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 519 AGGAAAGATTTTTCTCTATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCGAGCCTCAGT 592
Query 58 ACCAACGGGCTCGGCAGCAGCCCGGGCAGTGCCGGGCACATGAACGGATTAAGCCACAGCCCGGGGAACCCGTC 131
|||||||||||.|||||||||||||||||.||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 593 ACCAACGGGCTAGGCAGCAGCCCGGGCAGCGCCGGGCATATGAACGGATTAAGCCACAGCCCGGGGAACCCGTC 666
Query 132 GACCATTCCCATGAAGGACCATGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGCAACCTGGATGAGAAGG 205
|||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 667 GACCATTCCCATGAAGGACCACGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGAAACCTGGATGAGAAGG 740
Query 206 ACCTCAAGCCCCTCTTCGAGGAGTTTGGCAAAATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATG 279
|||||||||||||||||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACCTCAAGCCCCTCTTCGAGGAGTTCGGCAAGATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATG 814
Query 280 CACAAAGGCTGCGCCTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCA 353
||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CACAAAGGCTGCGCTTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCA 888
Query 354 GAAGACTCTGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAGGTAGTAGCT 427
||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAAGACCCTGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAG--------- 953
Query 428 GCCTGCGCCAGCCCCCTTCACATAGAAAACTCTTCGTGGGCATGCTCAACAAGCAACAGTCCGAGGACGACGTG 501
|||||||||||||||||||.|||||||||||||||||.||.||||||||||||
Sbjct 954 ---------------------ATAGAAAACTCTTCGTGGGTATGCTCAACAAGCAACAATCTGAGGACGACGTG 1006
Query 502 CGCCGCCTTTTCGAGGCCTTTGGGAACATCGAGGAGTGCACCATCCTGCGCGGGCCCGACGGCAACAGCAAGGG 575
||||||||.|||||||||||.||||||||||||||||||||.||||||||||||||.|||||||||||||||||
Sbjct 1007 CGCCGCCTCTTCGAGGCCTTCGGGAACATCGAGGAGTGCACTATCCTGCGCGGGCCGGACGGCAACAGCAAGGG 1080
Query 576 GTGCGCCTTTGTGAAGTACTCCTCCCACGCCGAGGCGCAGGCCGCCATCAACGCGCTACACGGCAGCCAGACCA 649
|||||||||||||||||||||||||||.||||||||.||.||||||||||||||.|||||.|||||||||||||
Sbjct 1081 GTGCGCCTTTGTGAAGTACTCCTCCCATGCCGAGGCACAAGCCGCCATCAACGCTCTACATGGCAGCCAGACCA 1154
Query 650 TGCCGGGAGCCTCGTCCAGTCTGGTGGTCAAGTTCGCCGACACCGACAAGGAGCGCACGATGCGGCGAATGCAG 723
||||.||||||||.|||||.||||||||||||||.||.|||||.||||||||||||||.|||||.||.||||||
Sbjct 1155 TGCCTGGAGCCTCCTCCAGCCTGGTGGTCAAGTTTGCAGACACTGACAAGGAGCGCACAATGCGACGGATGCAG 1228
Query 724 CAGATGGCTGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCTTTCGGGGCCTACGGCGCCTACGCTCAGGC 797
||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||||||.||||||||
Sbjct 1229 CAGATGGCTGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCCTTCGGAGCCTATGGCGCCTATGCTCAGGC 1302
Query 798 ACTGATGCAGCAGCAAGCGGCCCTGATGGCATCAGTCGCGCAGGGCGGCTACCTGAACCCCATGGCTGCCTTCG 871
||||||||||||||||||.|||||.||||||||.||||||||.||.|||||||||||.||||||||||||||||
Sbjct 1303 ACTGATGCAGCAGCAAGCAGCCCTCATGGCATCGGTCGCGCAAGGAGGCTACCTGAATCCCATGGCTGCCTTCG 1376
Query 872 CTGCCGCCCAGATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCGGCCGCACCTATGACCCCAACCTCA 945
||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1377 CTGCCGCCCAAATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCAGCCGCACCTATGACCCCAACCTCA 1450
Query 946 GGTGGCAGCACCCCTCCGGGCATCACTGCACCAGCCGTGCCTAGCATCCCATCCCCCATTGGGGTGAATGGCTT 1019
|||||||||||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||.|||||
Sbjct 1451 GGTGGCAGCACCCCTCCAGGCATCACTGCACCAGCTGTGCCTAGCATCCCATCCCCCATTGGGGTGAACGGCTT 1524
Query 1020 CACCGGCCTCCCCCCACAGGCCAATGGGCAACCTGCTGCGGAAGCTGTGTTCGCCAATGGCATCCACCCCTACC 1093
|||.|||||||||||.||||||||||||||.||||||||||||||||||||.|||||||||||.||||||||||
Sbjct 1525 CACGGGCCTCCCCCCTCAGGCCAATGGGCAGCCTGCTGCGGAAGCTGTGTTTGCCAATGGCATTCACCCCTACC 1598
Query 1094 CAGCACAGAGCCCCACCGCCGCGGACCCCCTGCAGCAGGCCTACGCCGGAGTGCAGCAGTATGCAGCAGCTGCC 1167
|||||||||||||||||||.||.|||||||||||||||||||||||.|||||||||||||||||||.|.|||||
Sbjct 1599 CAGCACAGAGCCCCACCGCAGCCGACCCCCTGCAGCAGGCCTACGCTGGAGTGCAGCAGTATGCAGGACCTGCC 1672
Query 1168 TACCCTGCTGCCTATGGTCAGATAAGCCAGGCCTTTCCTCAGCCGCCTCCAATGATCCCCCAGCAGCAGAGAGA 1241
|||||||||||||||||||||||.||||||||||||||||||||.||.||||||||.||||||||.||||||||
Sbjct 1673 TACCCTGCTGCCTATGGTCAGATTAGCCAGGCCTTTCCTCAGCCACCGCCAATGATTCCCCAGCAACAGAGAGA 1746
Query 1242 AGGGCCCGAGGGCTGTAACCTGTTCATCTACCATCTGCCCCAGGAGTTTGGGGACGCTGAGCTGATGCAGATGT 1315
||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1747 AGGGCCCGAGGGCTGTAACCTGCTCATCTACCATCTGCCCCAGGAGTTTGGGGACGCTGAGCTGATGCAGATGT 1820
Query 1316 TCCTCCCTTTC------------------------------------------------------------GGC 1329
||||||||||| |||
Sbjct 1821 TCCTCCCTTTCGGTAATGTCATCTCCTCGAAAGTGTTTGTGGATCGGGCGACTAACCAAAGTAAATGCTTTGGC 1894
Query 1330 TTCGTGAGCTTCGACAACCCGGCCAGCGCGCAGACCGCCATCCAGGCCATGAACGGCTTCCAGATCGGCATGAA 1403
|||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||
Sbjct 1895 TTCGTGAGCTTCGACAACCCGGCCAGCGCACAGACCGCCATCCAGGCCATGAACGGCTTCCAGATAGGCATGAA 1968
Query 1404 GAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTAC------------------------- 1452
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 GAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTACTGAGCGCCGGCGGGAGCGTCCCCCG 2042
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2043 GGGGAGACCAGGACTCGCACAGGGCCAGTCAAATCCACCACAGTCTCGCGCTGAGCTAGGAATAAAGTTCACGT 2116
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2117 AATCACATGAGAGTGGAGAAAAGTCCCCCATCCGGCAGGATGCTGAACGGGCTACATTAAAAACAAACCTCTTT 2190
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2191 CTCTCTCTATTTATAAATGAGAACTGTTGGACGACACCTTTGACATATCAGCCAATACCAATCAAGCTGACGAC 2264
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2265 TCCAGACACTCCGTGTGACTGTAACATTTCTTCAAGGAAAGTATAGCGTCTATGGAGTGCAGAGGGCATGTGTT 2338
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2339 TGGGGAAAAATATACATGACATAAAGATGACGACGAAGAAGAAAAATGATATAAAACAAACAAAAAACCCGCGA 2412
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2413 CTTTAAAATGAAATAACGTGAGCCCAGATGGGGAAGCTGAAGGGCTGGGCACTAGGAGGAGATGCTGCTGCCAA 2486
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2487 CCGATCCTGGGGCTTTTCCCGCCCGTAGGCGCCTGAGGCAGGCAGGGGCAAGTGTACAATGGGGCCTAGTCCCC 2560
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2561 AGCAGGCGGCTGGGAGGCCGCCACTGAGCATCTCTATTTGTCATTCCTTTAGCTATTTAGGGACCAAAGGACCA 2634
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2635 AACTTTTTATTGCAGATGTGTAGCTCTGTCAATTAGAGGTGGAATGGAGACCAACCTCCTTCCTGCCTCCTGGC 2708
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2709 TGTTCTTGAAACAGCTTAGAGCGATTCTATGAAAATGTAATAAAAAATAAAAATAAAAAAAAAATAAAAAAAGA 2782
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2783 ACAAAAAAAACAAGGAAAAAAAATAATGCTTCAACGCTTTTAAAACAGCAAGATACTAGTTCTTTGATACTTTG 2856
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2857 AGAGGCGCTTTGATTACCCCGATTGAAGTCTCTGAAACTTTCCTATGGTTTTCTGTATTATATGTCTGGATGGA 2930
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2931 GCTGTTTAGATACATTGATTGGTGGATATTTGGAGAAAGCAACAAAGATATTAAGTCATTAACCATGAAGAGAA 3004
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3005 CACGAGGGGAACCAGGGGACTTCGAAGGCAAGGTAATTGTTGTGAAAAGTCTGTAAATGCTTCTAATTCTTCCC 3078
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3079 CCCTCTTAAAATCATAATAGTTGTACAGAATTTTAAAAGGAAAAGTTTAAAATACCTATATCATAGAAGAAAAA 3152
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3153 AAAATTAGAGGAAAGCAAAAAAATAAAAAAAAAAAGGAAAAAAAAACCTTATAGAAGTTAGCATTATGCTAAAA 3226
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3227 TCCCAGATGTTGTAGGACTGTACTTCTGTAGAGTTTAGACTGAGCATCGATCCCGTCTCCCCGCGAGTGCTGTC 3300
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3301 GGACTCCGTCCCCAAGGGCCAGGCCGGACTGTCCAGACCTGCAGGCTCCGGCCAGAAGCGCCGCTCCGGAAGCG 3374
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3375 TCCTGCCGCCTCTCGCTTTGCCAGCCTGGGAGCCGCGCGCATGCGCGCTCTCTCTGCCCTTCTCACCTCTGCTT 3448
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3449 CACTCGCCTTCTGTGCTTGTTCCGGAGACTTTCCAGGCCAGGGAGAACTGGGAACTTCTCATCTTCAAACAACT 3522
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3523 AGACAACACACACACACACAAAACCTTAAACAAGAGAGAGAAAACAAACAATCTTTGAAGAATTTCTGAAACTG 3596
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3597 TTTACAAGGAATTTTGAAAAACAGGGATGTTTAAATGATGCTGGCTCTGTTTTTCTGTAAATAAATTTGCATAT 3670
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3671 TTTGTAGGACTTTTAATTGTAATGATAGAGAAAAAACAAGGAAAACTATTTAATGAAAGCACGATATTTATCTT 3744
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3745 TGGTAAATGACTTTAGAGCAGTTAAAGACATTGCTTAAAAACTCAGAATCAGAAAAACACTGAATTATTTAAGA 3818
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3819 ACACATATATTTTAAAGTATAACATATTTATTATAATTTATTTGCACCTTGGGAAGACTTGCTTTGCATTCTGC 3892
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3893 CTCAAGAGCTTCTCATTGATGTCCATCTGGAGGCCAGGGGGGTCTTGGAACTACCATTTTTTTTTCCTTTAGAT 3966
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3967 CAACAAAATTCTGGTTGCCCTCAGGCCTCCTTCCTTTTCTTTCCATCTATTTTGTTGTTGTTTTACTTCATTTA 4040
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 4041 GTTTTCTTTTTCTTTCTCTTGACTCCTCCTTTTAGGATGTCCAGATGTTGTAAAAAAACAAAAACAAAAAACCC 4114
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 4115 AACAGCTGCAGTTCAATACAACTGCTCTTTTCACACGACTCCCTAAACTCCTTGTAACCTTCTGTAACTATTGG 4188
Query 1453 --------------------------------------------------- 1452
Sbjct 4189 ATGACGCTTTCTCCAGCTTAGCCCTAAATAAAGCACAGTTTAAAAAAAAAA 4239
