Construct: ORF ccsbBroadEn_12306

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005339.1_s300c1, BRDN0000456548
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CELF4 (56853)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56853 CELF4 CUGBP Elav-like family memb... NM_001330603.2 99.9% 100% 153C>T
2 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353698.2 99.7% 99.5% 153C>T;1160_1162delGTC
3 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353744.2 99.7% 99.5% 153C>T;449_451delAAG
4 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353718.2 99.7% 99.7% 153C>T;1155_1156insGCA
5 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353738.2 99.7% 99.5% 153C>T;1160_1162delGTCinsCAG
6 human 56853 CELF4 CUGBP Elav-like family memb... NM_020180.4 99.5% 99.1% 153C>T;449_451delAAG;1163_1165delGTC
7 human 56853 CELF4 CUGBP Elav-like family memb... NM_001025088.2 99.5% 99.3% 153C>T;798_799insCTG;1157_1159delGTC
8 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353724.2 99.5% 99.3% 153C>T;449_451delAAG;1158_1159insGCA
9 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353751.2 99.5% 99.1% 153C>T;449_451delAAG;1163_1165delGTCinsCAG
10 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353712.2 99.5% 99.5% 153C>T;798_799insCTG;1152_1153insGCA
11 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353702.2 99.5% 99.3% 153C>T;798_799insCTG;1157_1159delGTCinsCAG
12 human 56853 CELF4 CUGBP Elav-like family memb... NM_001025087.2 99.3% 98.9% (many diffs)
13 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353745.2 99.3% 98.9% (many diffs)
14 human 56853 CELF4 CUGBP Elav-like family memb... XM_024451222.1 97.9% 97.7% 153C>T;419_419delAins28;421G>C
15 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353695.2 97.8% 97.7% 153C>T;418_419ins30
16 human 56853 CELF4 CUGBP Elav-like family memb... XM_017025846.2 97.7% 97.3% (many diffs)
17 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353710.2 97.7% 97.5% (many diffs)
18 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353750.2 97.7% 97.5% (many diffs)
19 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353748.2 97.7% 97.3% (many diffs)
20 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353709.2 97.6% 97.3% 153C>T;418_419ins30;1130_1132delGTC
21 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353711.2 97.6% 97.5% 153C>T;418_419ins30;768_769insCTG
22 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353714.2 97.6% 97.5% 153C>T;418_419ins30;1125_1126insGCA
23 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353753.2 97.6% 97.3% 153C>T;418_419ins30;1130_1132delGTCinsCAG
24 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353752.2 97.5% 97.1% (many diffs)
25 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353721.2 97.5% 97.1% (many diffs)
26 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353755.2 97.4% 97.1% (many diffs)
27 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353725.2 97.4% 97.1% (many diffs)
28 human 56853 CELF4 CUGBP Elav-like family memb... XM_011526081.3 95.7% 95.6% 153C>T;1160_1162delGTC;1330_1389del
29 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353742.2 95.7% 95.6% 153C>T;1160_1162delGTCinsCAG;1327_1386del
30 human 56853 CELF4 CUGBP Elav-like family memb... XM_011526079.3 95.5% 95.2% (many diffs)
31 human 56853 CELF4 CUGBP Elav-like family memb... XM_011526085.3 95.5% 95.4% (many diffs)
32 human 56853 CELF4 CUGBP Elav-like family memb... XM_011526083.3 95.5% 95.2% (many diffs)
33 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353729.2 94.1% 94.2% 153C>T;1242_1243ins84
34 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353696.2 93.9% 93.8% 153C>T;1160_1162delGTC;1245_1246ins84
35 human 56853 CELF4 CUGBP Elav-like family memb... XM_017025854.2 93.9% 93.8% 153C>T;449_451delAAG;1245_1246ins84
36 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353737.2 93.9% 94% 153C>T;1155_1156insGCA;1239_1240ins84
37 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353730.2 93.9% 93.8% 153C>T;1160_1162delGTCinsCAG;1242_1243ins84
38 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353717.2 93.8% 93.4% (many diffs)
39 human 56853 CELF4 CUGBP Elav-like family memb... XM_011526087.3 93.8% 93.6% (many diffs)
40 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353707.2 93.7% 93.4% (many diffs)
41 human 56853 CELF4 CUGBP Elav-like family memb... XM_024451223.1 93.7% 93.6% (many diffs)
42 human 56853 CELF4 CUGBP Elav-like family memb... XM_024451221.1 93.7% 93.4% (many diffs)
43 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353708.2 93.7% 93.4% (many diffs)
44 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353736.2 93.7% 93.6% (many diffs)
45 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353754.2 93.7% 93.6% (many diffs)
46 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353743.2 93.7% 93.4% (many diffs)
47 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353716.2 93.7% 93.5% (many diffs)
48 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353705.2 93.5% 93.2% (many diffs)
49 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353723.2 93.5% 93.2% (many diffs)
50 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353747.2 93.5% 93.1% (many diffs)
51 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353700.2 92.1% 91.9% (many diffs)
52 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353732.2 92% 91.9% 153C>T;418_419ins30;1212_1213ins84
53 human 56853 CELF4 CUGBP Elav-like family memb... NM_001025089.2 91.9% 91.5% (many diffs)
54 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353720.2 91.9% 91.7% (many diffs)
55 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353719.2 91.9% 91.5% (many diffs)
56 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353697.2 91.8% 91.5% (many diffs)
57 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353722.2 91.8% 91.7% (many diffs)
58 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353727.2 91.8% 91.5% (many diffs)
59 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353713.2 91.7% 91.3% (many diffs)
60 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353699.2 91.7% 91.3% (many diffs)
61 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353706.2 91.6% 91.3% (many diffs)
62 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353734.2 90.2% 83.3% (many diffs)
63 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353731.2 90.2% 83.3% (many diffs)
64 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353746.2 90% 83.1% (many diffs)
65 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353749.2 88.9% 82.3% (many diffs)
66 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353740.2 88.7% 82% (many diffs)
67 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353703.2 88.5% 81.6% (many diffs)
68 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353726.2 88.5% 81.6% (many diffs)
69 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353728.2 88.5% 81.6% (many diffs)
70 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353715.2 88.4% 76.4% (many diffs)
71 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353741.2 88.4% 81.4% (many diffs)
72 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353739.2 88.3% 81.4% (many diffs)
73 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353735.2 87% 80.3% (many diffs)
74 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353733.2 86.8% 80.2% (many diffs)
75 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353756.2 74.4% 74.2% 0_1ins369;791_793delGTC
76 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353761.2 74.3% 74.1% 0_1ins369;791_793delGTCinsCAG
77 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353757.2 72.4% 71.9% (many diffs)
78 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353760.2 72.3% 71.9% (many diffs)
79 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353759.2 72.3% 71.9% 0_1ins369;49_50ins30;761_763delGTC
80 human 56853 CELF4 CUGBP Elav-like family memb... XM_017025871.2 66.6% 66.1% (many diffs)
81 human 56853 CELF4 CUGBP Elav-like family memb... NM_001353758.2 66.5% 66.1% (many diffs)
82 human 56853 CELF4 CUGBP Elav-like family memb... XR_002958182.1 42.8% (many diffs)
83 human 56853 CELF4 CUGBP Elav-like family memb... XR_002958181.1 42.8% (many diffs)
84 human 56853 CELF4 CUGBP Elav-like family memb... NR_148528.2 37.1% (many diffs)
85 human 56853 CELF4 CUGBP Elav-like family memb... NR_148527.2 37.1% (many diffs)
86 human 56853 CELF4 CUGBP Elav-like family memb... NR_148521.2 37.1% (many diffs)
87 human 56853 CELF4 CUGBP Elav-like family memb... NR_148526.2 37% (many diffs)
88 human 56853 CELF4 CUGBP Elav-like family memb... NR_148520.2 37% (many diffs)
89 human 56853 CELF4 CUGBP Elav-like family memb... NR_148523.2 36.4% (many diffs)
90 human 56853 CELF4 CUGBP Elav-like family memb... NR_148525.2 36.4% (many diffs)
91 human 56853 CELF4 CUGBP Elav-like family memb... NR_148524.2 36.3% (many diffs)
92 human 56853 CELF4 CUGBP Elav-like family memb... NR_148522.2 36.3% (many diffs)
93 human 56853 CELF4 CUGBP Elav-like family memb... NR_148518.2 34.2% (many diffs)
94 human 56853 CELF4 CUGBP Elav-like family memb... NR_148519.2 34.1% (many diffs)
95 mouse 108013 Celf4 CUGBP, Elav-like family mem... NM_133195.3 95.5% 99.3% (many diffs)
96 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_006525520.2 95.5% 99.3% (many diffs)
97 mouse 108013 Celf4 CUGBP, Elav-like family mem... NM_001146293.1 95.3% 98.9% (many diffs)
98 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_006525514.2 95.3% 98.9% (many diffs)
99 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317798.1 93.5% 97.1% (many diffs)
100 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317797.1 93.5% 97.1% (many diffs)
101 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317796.1 93.5% 97.1% (many diffs)
102 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317795.1 93.4% 97.1% (many diffs)
103 mouse 108013 Celf4 CUGBP, Elav-like family mem... NM_001146292.1 91.7% 95.4% (many diffs)
104 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317792.1 91.7% 95.4% (many diffs)
105 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_006525512.2 91.6% 95% (many diffs)
106 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_006525511.2 91.5% 95% (many diffs)
107 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317793.1 89.8% 93.2% (many diffs)
108 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317799.1 89.8% 93.8% (many diffs)
109 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_006525513.2 89.8% 93.2% (many diffs)
110 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_006525517.2 89.8% 93.8% (many diffs)
111 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317794.1 89.8% 93.2% (many diffs)
112 mouse 108013 Celf4 CUGBP, Elav-like family mem... NM_001146294.1 89.7% 93.2% (many diffs)
113 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_006525516.2 89.6% 93.4% (many diffs)
114 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_006525515.2 89.6% 93.4% (many diffs)
115 mouse 108013 Celf4 CUGBP, Elav-like family mem... NM_001174074.1 89.4% 93.1% (many diffs)
116 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317800.1 87.8% 91.5% (many diffs)
117 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_006525518.2 87.8% 91.5% (many diffs)
118 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317801.1 87.8% 91.5% (many diffs)
119 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317788.1 86.6% 82.9% (many diffs)
120 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317787.1 86.6% 82.9% (many diffs)
121 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317786.1 86.4% 82.5% (many diffs)
122 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317785.1 86.4% 82.6% (many diffs)
123 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317784.1 85.1% 81.6% (many diffs)
124 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317783.1 85% 81.2% (many diffs)
125 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_006525510.2 85% 81.2% (many diffs)
126 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317790.1 84.7% 80.8% (many diffs)
127 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317791.1 84.7% 80.9% (many diffs)
128 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317789.1 83.3% 79.5% (many diffs)
129 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_011246805.1 82% 79.1% (many diffs)
130 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317782.1 80.4% 77.4% (many diffs)
131 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_006525508.2 80.4% 77.5% (many diffs)
132 mouse 108013 Celf4 CUGBP, Elav-like family mem... XM_017317802.1 70.8% 74% (many diffs)
133 mouse 108013 Celf4 CUGBP, Elav-like family mem... XR_001782325.1 33% (many diffs)
134 mouse 108013 Celf4 CUGBP, Elav-like family mem... XR_001782323.1 32.9% (many diffs)
135 mouse 108013 Celf4 CUGBP, Elav-like family mem... XR_001782326.1 32.9% (many diffs)
136 mouse 108013 Celf4 CUGBP, Elav-like family mem... XR_001782324.1 32.9% (many diffs)
137 mouse 108013 Celf4 CUGBP, Elav-like family mem... XR_385968.2 32.5% (many diffs)
138 mouse 108013 Celf4 CUGBP, Elav-like family mem... XR_001782320.1 32.4% (many diffs)
139 mouse 108013 Celf4 CUGBP, Elav-like family mem... XR_001782328.1 32.2% (many diffs)
140 mouse 108013 Celf4 CUGBP, Elav-like family mem... XR_001782327.1 32.2% (many diffs)
141 mouse 108013 Celf4 CUGBP, Elav-like family mem... XR_001782329.1 32.2% (many diffs)
142 mouse 108013 Celf4 CUGBP, Elav-like family mem... XR_001782321.1 31.8% (many diffs)
143 mouse 108013 Celf4 CUGBP, Elav-like family mem... XR_001782322.1 31.8% (many diffs)
144 mouse 108013 Celf4 CUGBP, Elav-like family mem... XR_001782330.1 31% (many diffs)
145 mouse 108013 Celf4 CUGBP, Elav-like family mem... NM_001146295.1 30.6% 26.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1518
ORF length:
1452
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTA TATAAAGATG GCCACGTTAG CAAACGGACA GGCTGACAAC GCAAGCCTCA
121GTACCAACGG GCTCGGCAGC AGCCCGGGCA GTGCCGGGCA CATGAACGGA TTAAGCCACA
181GCCCGGGGAA CCCGTCGACC ATTCCCATGA AGGACCATGA TGCCATCAAG CTGTTCATTG
241GGCAGATCCC CCGCAACCTG GATGAGAAGG ACCTCAAGCC CCTCTTCGAG GAGTTTGGCA
301AAATCTACGA GCTTACGGTT CTGAAGGACA GGTTCACAGG CATGCACAAA GGCTGCGCCT
361TCCTCACCTA CTGCGAGCGT GAGTCAGCGC TGAAGGCCCA GAGCGCGCTG CACGAGCAGA
421AGACTCTGCC CGGGATGAAC CGGCCGATCC AGGTGAAGCC TGCGGACAGC GAGAGCCGAG
481GAGGTAGTAG CTGCCTGCGC CAGCCCCCTT CACATAGAAA ACTCTTCGTG GGCATGCTCA
541ACAAGCAACA GTCCGAGGAC GACGTGCGCC GCCTTTTCGA GGCCTTTGGG AACATCGAGG
601AGTGCACCAT CCTGCGCGGG CCCGACGGCA ACAGCAAGGG GTGCGCCTTT GTGAAGTACT
661CCTCCCACGC CGAGGCGCAG GCCGCCATCA ACGCGCTACA CGGCAGCCAG ACCATGCCGG
721GAGCCTCGTC CAGTCTGGTG GTCAAGTTCG CCGACACCGA CAAGGAGCGC ACGATGCGGC
781GAATGCAGCA GATGGCTGGC CAGATGGGCA TGTTCAACCC CATGGCCATC CCTTTCGGGG
841CCTACGGCGC CTACGCTCAG GCACTGATGC AGCAGCAAGC GGCCCTGATG GCATCAGTCG
901CGCAGGGCGG CTACCTGAAC CCCATGGCTG CCTTCGCTGC CGCCCAGATG CAGCAGATGG
961CGGCCCTCAA CATGAATGGC CTGGCGGCCG CACCTATGAC CCCAACCTCA GGTGGCAGCA
1021CCCCTCCGGG CATCACTGCA CCAGCCGTGC CTAGCATCCC ATCCCCCATT GGGGTGAATG
1081GCTTCACCGG CCTCCCCCCA CAGGCCAATG GGCAACCTGC TGCGGAAGCT GTGTTCGCCA
1141ATGGCATCCA CCCCTACCCA GCACAGAGCC CCACCGCCGC GGACCCCCTG CAGCAGGCCT
1201ACGCCGGAGT GCAGCAGTAT GCAGCAGCTG CCTACCCTGC TGCCTATGGT CAGATAAGCC
1261AGGCCTTTCC TCAGCCGCCT CCAATGATCC CCCAGCAGCA GAGAGAAGGG CCCGAGGGCT
1321GTAACCTGTT CATCTACCAT CTGCCCCAGG AGTTTGGGGA CGCTGAGCTG ATGCAGATGT
1381TCCTCCCTTT CGGCTTCGTG AGCTTCGACA ACCCGGCCAG CGCGCAGACC GCCATCCAGG
1441CCATGAACGG CTTCCAGATC GGCATGAAGA GGCTCAAGGT GCAGCTGAAG CGGCCCAAAG
1501ACGCCAATCG CCCGTACTGC CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt
1561gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

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