Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12306
- Subject:
- XR_001782326.1
- Aligned Length:
- 4209
- Identities:
- 1388
- Gaps:
- 2757
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGGCAGGGAACTTGAACCGGTCCAGCCTGTTTAAACCGAAAGGACAGAGATCCTGTCTGTTCAATGTAAAAAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAAAAAAGAAGAAGAAGAAAAAAATCACATCAGACCGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAAGAAGAAGAGGGAGAGAGAGAGAGAGAGAGAGAAGAGAGAAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGAGAGAGAAGAGAGAGAGAAGAGAGAAATAGAACGAGAGCCCAGAGCAGAGCAAGGTGTAGGAAACCAAAGGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAGAGAACCCGAGTGTGTGCGTGTGTGTATGAGTGTGTGTGAGTGTGTGTGTGTGTGTGCGCGCGTGTGTGAGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGAGAGTGTGTGTGCGTGTGTGTGTGTGTGTGAGTGTGTGTGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGCGTGTGCGTGTGTGAGCGCGAGCGAGCGAGTGAGGGAGAGGAGCGAGAGAGTGCGAGCGAGAAAGAATAAA 518
Query 1 -----------------ATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCAAGCCTCAGT 57
|||||||||||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 519 AGGAAAGATTTTTCTCTATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCGAGCCTCAGT 592
Query 58 ACCAACGGGCTCGGCAGCAGCCCGGGCAGTGCCGGGCACATGAACGGATTAAGCCACAGCCCGGGGAACCCGTC 131
|||||||||||.|||||||||||||||||.||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 593 ACCAACGGGCTAGGCAGCAGCCCGGGCAGCGCCGGGCATATGAACGGATTAAGCCACAGCCCGGGGAACCCGTC 666
Query 132 GACCATTCCCATGAAGGACCATGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGCAACCTGGATGAGAAGG 205
|||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 667 GACCATTCCCATGAAGGACCACGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGAAACCTGGATGAGAAGG 740
Query 206 ACCTCAAGCCCCTCTTCGAGGAGTTTGGCAAAATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATG 279
|||||||||||||||||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACCTCAAGCCCCTCTTCGAGGAGTTCGGCAAGATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATG 814
Query 280 CACAAAGGCTGCGCCTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCA 353
||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CACAAAGGCTGCGCTTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCA 888
Query 354 GAAGACTCTGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAGGTAGTAGCT 427
||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAAGACCCTGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAGGTAGTAGCT 962
Query 428 GCCTGCGCCAGCCCCCTTCACATAGAAAACTCTTCGTGGGCATGCTCAACAAGCAACAGTCCGAGGACGACGTG 501
||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||.||||||||||||
Sbjct 963 GCCTGCGCCAGCCCCCTTCACATAGAAAACTCTTCGTGGGTATGCTCAACAAGCAACAATCTGAGGACGACGTG 1036
Query 502 CGCCGCCTTTTCGAGGCCTTTGGGAACATCGAGGAGTGCACCATCCTGCGCGGGCCCGACGGCAACAGCAAGGG 575
||||||||.|||||||||||.||||||||||||||||||||.||||||||||||||.|||||||||||||||||
Sbjct 1037 CGCCGCCTCTTCGAGGCCTTCGGGAACATCGAGGAGTGCACTATCCTGCGCGGGCCGGACGGCAACAGCAAGGG 1110
Query 576 GTGCGCCTTTGTGAAGTACTCCTCCCACGCCGAGGCGCAGGCCGCCATCAACGCGCTACACGGCAGCCAGACCA 649
|||||||||||||||||||||||||||.||||||||.||.||||||||||||||.|||||.|||||||||||||
Sbjct 1111 GTGCGCCTTTGTGAAGTACTCCTCCCATGCCGAGGCACAAGCCGCCATCAACGCTCTACATGGCAGCCAGACCA 1184
Query 650 TGCCGGGAGCCTCGTCCAGTCTGGTGGTCAAGTTCGCCGACACCGACAAGGAGCGCACGATGCGGCGAATGCAG 723
||||.||||||||.|||||.||||||||||||||.||.|||||.||||||||||||||.|||||.||.||||||
Sbjct 1185 TGCCTGGAGCCTCCTCCAGCCTGGTGGTCAAGTTTGCAGACACTGACAAGGAGCGCACAATGCGACGGATGCAG 1258
Query 724 CAGATGGCTGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCTTTCGGGGCCTACGGCGCCTACGCTCAGGC 797
||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||||||.||||||||
Sbjct 1259 CAGATGGCTGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCCTTCGGAGCCTATGGCGCCTATGCTCAGGC 1332
Query 798 ACTGATGCAGCAGCAAGCGGCCCTGATGGCATCAGTCGCGCAGGGCGGCTACCTGAACCCCATGGCTGCCTTCG 871
||||||||||||||||||.|||||.||||||||.||||||||.||.|||||||||||.||||||||||||||||
Sbjct 1333 ACTGATGCAGCAGCAAGCAGCCCTCATGGCATCGGTCGCGCAAGGAGGCTACCTGAATCCCATGGCTGCCTTCG 1406
Query 872 CTGCCGCCCAGATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCGGCCGCACCTATGACCCCAACCTCA 945
||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1407 CTGCCGCCCAAATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCAGCCGCACCTATGACCCCAACCTCA 1480
Query 946 GGTGGCAGCACCCCTCCGGGCATCACTGCACCAGCCGTGCCTAGCATCCCATCCCCCATTGGGGTGAATGGCTT 1019
|||||||||||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||.|||||
Sbjct 1481 GGTGGCAGCACCCCTCCAGGCATCACTGCACCAGCTGTGCCTAGCATCCCATCCCCCATTGGGGTGAACGGCTT 1554
Query 1020 CACCGGCCTCCCCCCACAGGCCAATGGGCAACCTGCTGCGGAAGCTGTGTTCGCCAATGGCATCCACCCCTACC 1093
|||.|||||||||||.||||||||||||||.||||||||||||||||||||.|||||||||||.||||||||||
Sbjct 1555 CACGGGCCTCCCCCCTCAGGCCAATGGGCAGCCTGCTGCGGAAGCTGTGTTTGCCAATGGCATTCACCCCTACC 1628
Query 1094 CAGCACAGAGCCCCACCGCCGCGGACCCCCTGCAGCAGGCCTACGCCGGAGTGCAGCAGTATGCAGCAGCTGCC 1167
|||||||||||||||||||.||.|||||||||||||||||||||||.|||||||||||||||||||.|.|||||
Sbjct 1629 CAGCACAGAGCCCCACCGCAGCCGACCCCCTGCAGCAGGCCTACGCTGGAGTGCAGCAGTATGCAGGACCTGCC 1702
Query 1168 TACCCTGCTGCCTATGGTCAGATAAGCCAGGCCTTTCCTCAGCCGCCTCCAATGATCCCCCAGCAGCAGAGAGA 1241
|||||||||||||||||||||||.||||||||||||||||||||.||.||||||||.||||||||.||||||||
Sbjct 1703 TACCCTGCTGCCTATGGTCAGATTAGCCAGGCCTTTCCTCAGCCACCGCCAATGATTCCCCAGCAACAGAGAGA 1776
Query 1242 AGGGCCCGAGGGCTGTAACCTGTTCATCTACCATCTGCCCCAGGAGTTTGGGGACGCTGAGCTGATGCAGATGT 1315
||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AGGGCCCGAGGGCTGTAACCTGCTCATCTACCATCTGCCCCAGGAGTTTGGGGACGCTGAGCTGATGCAGATGT 1850
Query 1316 TCCTCCCTTTCGGCTTCGTGAGCTTCGACAACCCGGCCAGCGCGCAGACCGCCATCCAGGCCATGAACGGCTTC 1389
|||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1851 TCCTCCCTTTCGGCTTCGTGAGCTTCGACAACCCGGCCAGCGCACAGACCGCCATCCAGGCCATGAACGGCTTC 1924
Query 1390 CAGATCGGCATGAAGAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTAC----------- 1452
|||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 CAGATAGGCATGAAGAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTACTGAGCGCCGGC 1998
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 1999 GGGAGCGTCCCCCGGGGGAGACCAGGACTCGCACAGGGCCAGTCAAATCCACCACAGTCTCGCGCTGAGCTAGG 2072
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2073 AATAAAGTTCACGTAATCACATGAGAGTGGAGAAAAGTCCCCCATCCGGCAGGATGCTGAACGGGCTACATTAA 2146
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2147 AAACAAACCTCTTTCTCTCTCTATTTATAAATGAGAACTGTTGGACGACACCTTTGACATATCAGCCAATACCA 2220
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2221 ATCAAGCTGACGACTCCAGACACTCCGTGTGACTGTAACATTTCTTCAAGGAAAGTATAGCGTCTATGGAGTGC 2294
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2295 AGAGGGCATGTGTTTGGGGAAAAATATACATGACATAAAGATGACGACGAAGAAGAAAAATGATATAAAACAAA 2368
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2369 CAAAAAACCCGCGACTTTAAAATGAAATAACGTGAGCCCAGATGGGGAAGCTGAAGGGCTGGGCACTAGGAGGA 2442
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2443 GATGCTGCTGCCAACCGATCCTGGGGCTTTTCCCGCCCGTAGGCGCCTGAGGCAGGCAGGGGCAAGTGTACAAT 2516
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2517 GGGGCCTAGTCCCCAGCAGGCGGCTGGGAGGCCGCCACTGAGCATCTCTATTTGTCATTCCTTTAGCTATTTAG 2590
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2591 GGACCAAAGGACCAAACTTTTTATTGCAGATGTGTAGCTCTGTCAATTAGAGGTGGAATGGAGACCAACCTCCT 2664
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2665 TCCTGCCTCCTGGCTGTTCTTGAAACAGCTTAGAGCGATTCTATGAAAATGTAATAAAAAATAAAAATAAAAAA 2738
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2739 AAAATAAAAAAAGAACAAAAAAAACAAGGAAAAAAAATAATGCTTCAACGCTTTTAAAACAGCAAGATACTAGT 2812
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2813 TCTTTGATACTTTGAGAGGCGCTTTGATTACCCCGATTGAAGTCTCTGAAACTTTCCTATGGTTTTCTGTATTA 2886
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2887 TATGTCTGGATGGAGCTGTTTAGATACATTGATTGGTGGATATTTGGAGAAAGCAACAAAGATATTAAGTCATT 2960
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2961 AACCATGAAGAGAACACGAGGGGAACCAGGGGACTTCGAAGGCAAGGTAATTGTTGTGAAAAGTCTGTAAATGC 3034
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3035 TTCTAATTCTTCCCCCCTCTTAAAATCATAATAGTTGTACAGAATTTTAAAAGGAAAAGTTTAAAATACCTATA 3108
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3109 TCATAGAAGAAAAAAAAATTAGAGGAAAGCAAAAAAATAAAAAAAAAAAGGAAAAAAAAACCTTATAGAAGTTA 3182
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3183 GCATTATGCTAAAATCCCAGATGTTGTAGGACTGTACTTCTGTAGAGTTTAGACTGAGCATCGATCCCGTCTCC 3256
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3257 CCGCGAGTGCTGTCGGACTCCGTCCCCAAGGGCCAGGCCGGACTGTCCAGACCTGCAGGCTCCGGCCAGAAGCG 3330
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3331 CCGCTCCGGAAGCGTCCTGCCGCCTCTCGCTTTGCCAGCCTGGGAGCCGCGCGCATGCGCGCTCTCTCTGCCCT 3404
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3405 TCTCACCTCTGCTTCACTCGCCTTCTGTGCTTGTTCCGGAGACTTTCCAGGCCAGGGAGAACTGGGAACTTCTC 3478
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3479 ATCTTCAAACAACTAGACAACACACACACACACAAAACCTTAAACAAGAGAGAGAAAACAAACAATCTTTGAAG 3552
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3553 AATTTCTGAAACTGTTTACAAGGAATTTTGAAAAACAGGGATGTTTAAATGATGCTGGCTCTGTTTTTCTGTAA 3626
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3627 ATAAATTTGCATATTTTGTAGGACTTTTAATTGTAATGATAGAGAAAAAACAAGGAAAACTATTTAATGAAAGC 3700
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3701 ACGATATTTATCTTTGGTAAATGACTTTAGAGCAGTTAAAGACATTGCTTAAAAACTCAGAATCAGAAAAACAC 3774
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3775 TGAATTATTTAAGAACACATATATTTTAAAGTATAACATATTTATTATAATTTATTTGCACCTTGGGAAGACTT 3848
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3849 GCTTTGCATTCTGCCTCAAGAGCTTCTCATTGATGTCCATCTGGAGGCCAGGGGGGTCTTGGAACTACCATTTT 3922
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3923 TTTTTCCTTTAGATCAACAAAATTCTGGTTGCCCTCAGGCCTCCTTCCTTTTCTTTCCATCTATTTTGTTGTTG 3996
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3997 TTTTACTTCATTTAGTTTTCTTTTTCTTTCTCTTGACTCCTCCTTTTAGGATGTCCAGATGTTGTAAAAAAACA 4070
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 4071 AAAACAAAAAACCCAACAGCTGCAGTTCAATACAACTGCTCTTTTCACACGACTCCCTAAACTCCTTGTAACCT 4144
Query 1453 ----------------------------------------------------------------- 1452
Sbjct 4145 TCTGTAACTATTGGATGACGCTTTCTCCAGCTTAGCCCTAAATAAAGCACAGTTTAAAAAAAAAA 4209
