Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12306
- Subject:
- XR_001782330.1
- Aligned Length:
- 4215
- Identities:
- 1307
- Gaps:
- 2847
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGGCAGGGAACTTGAACCGGTCCAGCCTGTTTAAACCGAAAGGACAGAGATCCTGTCTGTTCAATGTAAAAAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAAAAAAGAAGAAGAAGAAAAAAATCACATCAGACCGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAAGAAGAAGAGGGAGAGAGAGAGAGAGAGAGAGAAGAGAGAAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGAGAGAGAAGAGAGAGAGAAGAGAGAAATAGAACGAGAGCCCAGAGCAGAGCAAGGTGTAGGAAACCAAAGGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAGAGAACCCGAGTGTGTGCGTGTGTGTATGAGTGTGTGTGAGTGTGTGTGTGTGTGTGCGCGCGTGTGTGAGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGAGAGTGTGTGTGCGTGTGTGTGTGTGTGTGAGTGTGTGTGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGCGTGTGCGTGTGTGAGCGCGAGCGAGCGAGTGAGGGAGAGGAGCGAGAGAGTGCGAGCGAGAAAGAATAAA 518
Query 1 -----------------ATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCAAGCCTCAGT 57
|||||||||||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 519 AGGAAAGATTTTTCTCTATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCGAGCCTCAGT 592
Query 58 ACCAACGGGCTCGGCAGCAGCCCGGGCAGTGCCGGGCACATGAACGGATTAAGCCACAGCCCGGGGAACCCGTC 131
|||||||||||.|||||||||||||||||.||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 593 ACCAACGGGCTAGGCAGCAGCCCGGGCAGCGCCGGGCATATGAACGGATTAAGCCACAGCCCGGGGAACCCGTC 666
Query 132 GACCATTCCCATGAAGGACCATGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGCAACCTGGATGAGAAGG 205
|||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 667 GACCATTCCCATGAAGGACCACGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGAAACCTGGATGAGAAGG 740
Query 206 ACCTCAAGCCCCTCTTCGAGGAGTTTGGCAAAATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATG 279
|||||||||||||||||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACCTCAAGCCCCTCTTCGAGGAGTTCGGCAAGATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATG 814
Query 280 CACAAAGGCTGCGCCTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCA 353
||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CACAAAGGCTGCGCTTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCA 888
Query 354 GAAGACTCTGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAGGTAGTAGCT 427
||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAAGACCCTGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAGGTAGTAGCT 962
Query 428 GCCTGCGCCAGCCCCCTTCAC---ATAGAAAACTCTTCGTGGGCATGCTCAACAAGCAACAGTCCGAGGACGAC 498
||||||||||||||||||||| |||||||||||||||||||.|||||||||||||||||.||.|||||||||
Sbjct 963 GCCTGCGCCAGCCCCCTTCACAAGATAGAAAACTCTTCGTGGGTATGCTCAACAAGCAACAATCTGAGGACGAC 1036
Query 499 GTGCGCCGCCTTTTCGAGGCCTTTGGGAACATCGAGGAGTGCACCATCCTGCGCGGGCCCGACGGCAACAGCAA 572
|||||||||||.|||||||||||.||||||||||||||||||||.||||||||||||||.||||||||||||||
Sbjct 1037 GTGCGCCGCCTCTTCGAGGCCTTCGGGAACATCGAGGAGTGCACTATCCTGCGCGGGCCGGACGGCAACAGCAA 1110
Query 573 GGGGTGCGCCTTTGTGAAGTACTCCTCCCACGCCGAGGCGCAGGCCGCCATCAACGCGCTACACGGCAGCCAGA 646
||||||||||||||||||||||||||||||.||||||||.||.||||||||||||||.|||||.||||||||||
Sbjct 1111 GGGGTGCGCCTTTGTGAAGTACTCCTCCCATGCCGAGGCACAAGCCGCCATCAACGCTCTACATGGCAGCCAGA 1184
Query 647 CCATGCCGGGAGCCTCGTCCAGTCTGGTGGTCAAGTTCGCCGACACCGACAAGGAGCGCACGATGCGGCGAATG 720
|||||||.||||||||.|||||.||||||||||||||.||.|||||.||||||||||||||.|||||.||.|||
Sbjct 1185 CCATGCCTGGAGCCTCCTCCAGCCTGGTGGTCAAGTTTGCAGACACTGACAAGGAGCGCACAATGCGACGGATG 1258
Query 721 CAGCAGATGGCTGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCTTTCGGGGCCTACGGCGCCTACGCTCA 794
|||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||||||.|||||
Sbjct 1259 CAGCAGATGGCTGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCCTTCGGAGCCTATGGCGCCTATGCTCA 1332
Query 795 GGCACTGATGCAGCAGCAAGCGGCCCTGATGGCATCAGTCGCGCAGGGCGGCTACCTGAACCCCATGGCTGCCT 868
|||||||||||||||||||||.|||||.||||||||.||||||||.||.|||||||||||.|||||||||||||
Sbjct 1333 GGCACTGATGCAGCAGCAAGCAGCCCTCATGGCATCGGTCGCGCAAGGAGGCTACCTGAATCCCATGGCTGCCT 1406
Query 869 TCGCTGCCGCCCAGATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCGGCCGCACCTATGACCCCAACC 942
|||||||||||||.||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 1407 TCGCTGCCGCCCAAATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCAGCCGCACCTATGACCCCAACC 1480
Query 943 TCAGGTGGCAGCACCCCTCCGGGCATCACTGCACCAGCCGTGCCTAGCATCCCATCCCCCATTGGGGTGAATGG 1016
||||||||||||||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||.||
Sbjct 1481 TCAGGTGGCAGCACCCCTCCAGGCATCACTGCACCAGCTGTGCCTAGCATCCCATCCCCCATTGGGGTGAACGG 1554
Query 1017 CTTCACCGGCCTCCCCCCACAGGCCAATGGGCAACCTGCTGCGGAAGCTGTGTTCGCCAATGGCATCCACCCCT 1090
||||||.|||||||||||.||||||||||||||.||||||||||||||||||||.|||||||||||.|||||||
Sbjct 1555 CTTCACGGGCCTCCCCCCTCAGGCCAATGGGCAGCCTGCTGCGGAAGCTGTGTTTGCCAATGGCATTCACCCCT 1628
Query 1091 ACCCAGCACAGAGCCCCACCGCCGCGGACCCCCTGCAGCAGGCCTACGCCGGAGTGCAGCAGTATGCAG---CA 1161
||||||||||||||||||||||.||.|||||||||||||||||||||||.||||||||||||||||||| ||
Sbjct 1629 ACCCAGCACAGAGCCCCACCGCAGCCGACCCCCTGCAGCAGGCCTACGCTGGAGTGCAGCAGTATGCAGGACCA 1702
Query 1162 GCTGCCTACCCTGCTGCCTATGGTCAGATAAGCCAGGCCTTTCCTCAGCCGCCTCCAATGATCCCCCAGCAGCA 1235
|||||||||||||||||||||||||||||.||||||||||||||||||||.||.||||||||.||||||||.||
Sbjct 1703 GCTGCCTACCCTGCTGCCTATGGTCAGATTAGCCAGGCCTTTCCTCAGCCACCGCCAATGATTCCCCAGCAACA 1776
Query 1236 GAGAGAAGGGCCCGAGGGCTGTAACCTGTTCATCTACCATCTGCCCCAGGAGTTTGGGGACGCTGAGCTGATGC 1309
|||||||
Sbjct 1777 GAGAGAA------------------------------------------------------------------- 1783
Query 1310 AGATGTTCCTCCCTTTCGGCTTCGTGAGCTTCGACAACCCGGCCAGCGCGCAGACCGCCATCCAGGCCATGAAC 1383
||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1784 -----------------GGCTTCGTGAGCTTCGACAACCCGGCCAGCGCACAGACCGCCATCCAGGCCATGAAC 1840
Query 1384 GGCTTCCAGATCGGCATGAAGAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTAC----- 1452
|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 GGCTTCCAGATAGGCATGAAGAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTACTGAGC 1914
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 1915 GCCGGCGGGAGCGTCCCCCGGGGGAGACCAGGACTCGCACAGGGCCAGTCAAATCCACCACAGTCTCGCGCTGA 1988
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 1989 GCTAGGAATAAAGTTCACGTAATCACATGAGAGTGGAGAAAAGTCCCCCATCCGGCAGGATGCTGAACGGGCTA 2062
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2063 CATTAAAAACAAACCTCTTTCTCTCTCTATTTATAAATGAGAACTGTTGGACGACACCTTTGACATATCAGCCA 2136
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2137 ATACCAATCAAGCTGACGACTCCAGACACTCCGTGTGACTGTAACATTTCTTCAAGGAAAGTATAGCGTCTATG 2210
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2211 GAGTGCAGAGGGCATGTGTTTGGGGAAAAATATACATGACATAAAGATGACGACGAAGAAGAAAAATGATATAA 2284
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2285 AACAAACAAAAAACCCGCGACTTTAAAATGAAATAACGTGAGCCCAGATGGGGAAGCTGAAGGGCTGGGCACTA 2358
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2359 GGAGGAGATGCTGCTGCCAACCGATCCTGGGGCTTTTCCCGCCCGTAGGCGCCTGAGGCAGGCAGGGGCAAGTG 2432
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2433 TACAATGGGGCCTAGTCCCCAGCAGGCGGCTGGGAGGCCGCCACTGAGCATCTCTATTTGTCATTCCTTTAGCT 2506
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2507 ATTTAGGGACCAAAGGACCAAACTTTTTATTGCAGATGTGTAGCTCTGTCAATTAGAGGTGGAATGGAGACCAA 2580
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2581 CCTCCTTCCTGCCTCCTGGCTGTTCTTGAAACAGCTTAGAGCGATTCTATGAAAATGTAATAAAAAATAAAAAT 2654
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2655 AAAAAAAAAATAAAAAAAGAACAAAAAAAACAAGGAAAAAAAATAATGCTTCAACGCTTTTAAAACAGCAAGAT 2728
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2729 ACTAGTTCTTTGATACTTTGAGAGGCGCTTTGATTACCCCGATTGAAGTCTCTGAAACTTTCCTATGGTTTTCT 2802
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2803 GTATTATATGTCTGGATGGAGCTGTTTAGATACATTGATTGGTGGATATTTGGAGAAAGCAACAAAGATATTAA 2876
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2877 GTCATTAACCATGAAGAGAACACGAGGGGAACCAGGGGACTTCGAAGGCAAGGTAATTGTTGTGAAAAGTCTGT 2950
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2951 AAATGCTTCTAATTCTTCCCCCCTCTTAAAATCATAATAGTTGTACAGAATTTTAAAAGGAAAAGTTTAAAATA 3024
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3025 CCTATATCATAGAAGAAAAAAAAATTAGAGGAAAGCAAAAAAATAAAAAAAAAAAGGAAAAAAAAACCTTATAG 3098
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3099 AAGTTAGCATTATGCTAAAATCCCAGATGTTGTAGGACTGTACTTCTGTAGAGTTTAGACTGAGCATCGATCCC 3172
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3173 GTCTCCCCGCGAGTGCTGTCGGACTCCGTCCCCAAGGGCCAGGCCGGACTGTCCAGACCTGCAGGCTCCGGCCA 3246
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3247 GAAGCGCCGCTCCGGAAGCGTCCTGCCGCCTCTCGCTTTGCCAGCCTGGGAGCCGCGCGCATGCGCGCTCTCTC 3320
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3321 TGCCCTTCTCACCTCTGCTTCACTCGCCTTCTGTGCTTGTTCCGGAGACTTTCCAGGCCAGGGAGAACTGGGAA 3394
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3395 CTTCTCATCTTCAAACAACTAGACAACACACACACACACAAAACCTTAAACAAGAGAGAGAAAACAAACAATCT 3468
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3469 TTGAAGAATTTCTGAAACTGTTTACAAGGAATTTTGAAAAACAGGGATGTTTAAATGATGCTGGCTCTGTTTTT 3542
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3543 CTGTAAATAAATTTGCATATTTTGTAGGACTTTTAATTGTAATGATAGAGAAAAAACAAGGAAAACTATTTAAT 3616
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3617 GAAAGCACGATATTTATCTTTGGTAAATGACTTTAGAGCAGTTAAAGACATTGCTTAAAAACTCAGAATCAGAA 3690
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3691 AAACACTGAATTATTTAAGAACACATATATTTTAAAGTATAACATATTTATTATAATTTATTTGCACCTTGGGA 3764
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3765 AGACTTGCTTTGCATTCTGCCTCAAGAGCTTCTCATTGATGTCCATCTGGAGGCCAGGGGGGTCTTGGAACTAC 3838
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3839 CATTTTTTTTTCCTTTAGATCAACAAAATTCTGGTTGCCCTCAGGCCTCCTTCCTTTTCTTTCCATCTATTTTG 3912
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3913 TTGTTGTTTTACTTCATTTAGTTTTCTTTTTCTTTCTCTTGACTCCTCCTTTTAGGATGTCCAGATGTTGTAAA 3986
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3987 AAAACAAAAACAAAAAACCCAACAGCTGCAGTTCAATACAACTGCTCTTTTCACACGACTCCCTAAACTCCTTG 4060
Query 1453 ----------------------------------------------------------------------- 1452
Sbjct 4061 TAACCTTCTGTAACTATTGGATGACGCTTTCTCCAGCTTAGCCCTAAATAAAGCACAGTTTAAAAAAAAAA 4131
