Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12321
- Subject:
- XM_006522560.3
- Aligned Length:
- 2890
- Identities:
- 1545
- Gaps:
- 1199
Alignment
Query 1 ATGAAAGGCAGTAATAGAAATAAGGATCATTCAGCAGAAGGAGAAGGGGTTGGAAAACGACCAAAACGAAAGTG 74
|||||||||||||||||||||||.||.||||||.|||||||||||||||..|||||||||||||||||.|||||
Sbjct 1 ATGAAAGGCAGTAATAGAAATAAAGACCATTCAACAGAAGGAGAAGGGGACGGAAAACGACCAAAACGGAAGTG 74
Query 75 TCTTCAGTGGCATCCATTGCTAGCAAAGAAACTTCTTGATTTTTCAGAAGAGGAAGAAGAGGAAGACGAAGAGG 148
|||||||||||||||.||||||||.|||||||||||.||.||||||||.|||||.||.||.||.||.|||||||
Sbjct 75 TCTTCAGTGGCATCCGTTGCTAGCTAAGAAACTTCTGGACTTTTCAGAGGAGGAGGAGGAAGACGAGGAAGAGG 148
Query 149 AGGATATTGATAAGGTTCAACTTCTTGGGGCCGATGGCCTAGAGCAAGATGTTGGTGAAACTGAAGATGATGAA 222
|.|||||||||
Sbjct 149 AAGATATTGAT--------------------------------------------------------------- 159
Query 223 TCACCAGAGCAGCGAGCCCGGAGACCAATGAATGCATTTCTTTTATTTTGCAAACGCCATCGCTCTCTTGTACG 296
||||||||.|||||.|||||.||
Sbjct 160 ---------------------------------------------------AAACGCCACCGCTCCCTTGTCCG 182
Query 297 TCAGGAACACCCCAGGCTTGATAACCGAGGTGCTACCAAGATACTAGCTGATTGGTGGGCTGTTCTTGATCCAA 370
.|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 183 ACAGGAACACCCAAGGCTTGATAACCGAGGTGCTACCAAGATACTAGCTGATTGGTGGGCTGTTCTTGATCCTA 256
Query 371 AGGAAAAGCAGAAATACACAGACATGGCCAAGGAGTATAAGGATGCATTTATGAAAGCAAATCCTGGCTACAAA 444
||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||||||||||.|
Sbjct 257 AGGAAAAGCAGAAATATACAGACATGGCCAAGGAGTATAAAGATGCATTTATGAAAGCAAATCCTGGCTACAGA 330
Query 445 TGGTGTCCTACCACAAACAAGCCTGTGAAATCCCCAACACCCACTGTCAATCCACGAAAGAAACTTTGGGCCTT 518
|||||.||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||
Sbjct 331 TGGTGCCCTACCACAAACAAGCCTGTGAAATCGCCAACACCCACTGTCAATCCACGGAAGAAACTTTGGGCCTT 404
Query 519 CCCATCTGACTCTTCAAGAGACTTGCCAAGCCCCAAGAAAGCAAAGACTGAAGAAATGCCTCAGCTTAACTTTG 592
||||.||||||||||||||||||||||||.|||||||||.|||||||| ||||.|.||||||||.|||||||
Sbjct 405 CCCACCTGACTCTTCAAGAGACTTGCCAACCCCCAAGAAGGCAAAGAC---AGAAGTTCCTCAGCTCAACTTTG 475
Query 593 GAATGGCTGATCCTACTCAAATGGGAGGCCTGAGTATGCTGCTGTTAGCTGGAGAACATGCTCTTGGCACACCA 666
|||||||.|||||||||||.|||||.||||||||.|||.|||||.||||||||||.||.||||||||.||||||
Sbjct 476 GAATGGCAGATCCTACTCAGATGGGGGGCCTGAGCATGTTGCTGCTAGCTGGAGAGCACGCTCTTGGGACACCA 549
Query 667 GAGGTATCCTCTGGCACATGCAGGCCTGATGTTTCAGAATCTCCTGAATTACGTCAGAAGTCACCATTGTTTCA 740
||||.|||||||||.||.||||||||||||.||||||||||.|||||.||.|||||||||||||||||||||||
Sbjct 550 GAGGCATCCTCTGGGACTTGCAGGCCTGATATTTCAGAATCACCTGAGTTGCGTCAGAAGTCACCATTGTTTCA 623
Query 741 GTTTGCCGAGATATCTTCAAGTACGTCCCACTCTGATGCTTCTACAAAGCAGTGTCAAACATCTGCCTTGTTTC 814
|||||||||||||||||||||.||.||.|||.|.|||||..||.||||.|||||||||.|.||.||||||||||
Sbjct 624 GTTTGCCGAGATATCTTCAAGGACATCGCACCCCGATGCGCCTTCAAAACAGTGTCAAGCGTCAGCCTTGTTTC 697
Query 815 AGTTTGCAGAGATTTCTTCAAACACTTCGCAGTTGGGTGGTGCTGAGCCTGTAAAACGCTGTGGAAAGTCTGCA 888
|||||||||||||.|||||||.||||||||||||||||||..||||||||||.||||||||||||||.||||||
Sbjct 698 AGTTTGCAGAGATCTCTTCAAGCACTTCGCAGTTGGGTGGCACTGAGCCTGTGAAACGCTGTGGAAATTCTGCA 771
Query 889 CTCTTTCAACTGG------------------------------------------------------------- 901
|||||||||||||
Sbjct 772 CTCTTTCAACTGGCAGAGATGTGTCTGGCATCAGAGGGGGTGAAAATGGAAGACACAAAACTAATAAAATCAAA 845
Query 902 -------------------------------------------------------------------------- 901
Sbjct 846 AGAGTCAGATGGAGGAAGAATTGAGGAAATAGAAAAGGGGAAGGAAGAGAGAGGCACAGAAGTGGAGAAAACCA 919
Query 902 -------------------------------------------------------------------------- 901
Sbjct 920 CTGAAACTTCGTTCCAGAAGGAAGCAGAATTTGGGAAGTCAGCTAAGGGCAACGTGAGAGAGTCTAAGGACTTA 993
Query 902 -------------------------------------------------------------------------- 901
Sbjct 994 AGAGACATCGAACAGCTACAGATGGATAATGTCATGGCTATCAAAGTGGAAGACCCCAAAGAAATTAGGAAGGA 1067
Query 902 -------------------------------------------------------------------------- 901
Sbjct 1068 GCCAGAGGATGATCAGAAATACAGTCACTTCCCTGATTTTTCTTACTCTGCCAGTAGCAAGATAATAATTAGTG 1141
Query 902 -------------------------------------------------------------------------- 901
Sbjct 1142 GTGTCCCCAGTAGAAAGGACCACATGTGCCATCCTCACGGAATTATGATCATTGAGGACCCAACCACGCTAAAC 1215
Query 902 -------------------------------------------------------------------------- 901
Sbjct 1216 AAACCAGAGAAGATAAAGAAGAAAAAGAAGAAAAACAAACTGGATCGACACGGAAATGACAAATCCACACCCAA 1289
Query 902 -------------------------------------------------------------------------- 901
Sbjct 1290 GAAGACGTGCAAGAAGAGGCAGTCTTCAGAATCTGACATCGAGAGTGTCATGTACACCATCGAAGCTGTGGCAA 1363
Query 902 -------------------------------------------------------------------------- 901
Sbjct 1364 AAGGAGACTGGGGTGTTGACAAACTCGGAGAAACCCCAAGAAAGAAAGTCCGCCCCTCCTCAAGTGGCAAGGGA 1437
Query 902 -------------------------------------------------------------------------- 901
Sbjct 1438 GGCATTTTGGATGCCAAGCCACCAAAGAAAAAAGTGAAATCCAAGGAGAAGAAAGTTTCCAAGGAGAAGTGCTC 1511
Query 902 -------------------------------------------------------------------------- 901
Sbjct 1512 AGACATCACCAAAGAGTCTCGACCTCCAGATTTCCTTAGCATTTCTGCCAGCAAGAGTGTTCCTGGGGAGGTGC 1585
Query 902 -------------------------------------------------------------------------- 901
Sbjct 1586 CAGAGGGCATAAAAGCAGAACCCTTGACCCCTACCGAGGATGCACTGCCACCTAGCCTACCAGGACAGGCTAAG 1659
Query 902 -------------------------------------------------------------------------- 901
Sbjct 1660 CCTGAGGATAGTGATTGTCACAGAAAAACGGAGACCTGTGGCTCCAGGAAATCTGAGAGGTCTTGCAAAGGTGC 1733
Query 902 ---------------------------------------------------------CAGAGGAAAACGAAGCT 918
||||||.||||||||||
Sbjct 1734 TCTTTATAAAACCCTGGTGTCCGAGGGCATGCTCACCTCTCTCCGAGCTAATGTTGACAGAGGGAAACGAAGCT 1807
Query 919 CAGGAAAAGGAAACTCCTCTGATCATGAAGGGTGTTGGAATGAAGAAAGCTGGACATTTAGTCAGAGTGGGACC 992
|||||||||||||||||||||||||||||||||||||||.||||||.|||||||||||||.|||||||||||||
Sbjct 1808 CAGGAAAAGGAAACTCCTCTGATCATGAAGGGTGTTGGAGTGAAGAGAGCTGGACATTTAATCAGAGTGGGACC 1881
Query 993 AGTGGGAGCAAGAAGTTCAAGAAGACAAAGCCAAAAGAAGACTGTCTCCTTGGCTCCGCAAAGCTGGATGAAGA 1066
|||||||||||||||||.|||||| ||.|.||..|||||||...|||||||.||.||.||||||||||||||
Sbjct 1882 AGTGGGAGCAAGAAGTTTAAGAAG---AAACTAAGGGAAGACTCCTTCCTTGGTTCTGCGAAGCTGGATGAAGA 1952
Query 1067 ATTTGAAAAAAAATTCAACAGCCTCCCTCAATATAGTCCTGTTACATTTGACCGGAAATGTGTACCTGTCCCAA 1140
|||||||||.||||||||||||||||||||||||||||||.|||||||||||||||||||.|||.||...||||
Sbjct 1953 ATTTGAAAAGAAATTCAACAGCCTCCCTCAATATAGTCCTATTACATTTGACCGGAAATGCGTATCTACTCCAA 2026
Query 1141 GAAAAAAGAAGAAGACTGGAAATGTGTCCTCAGAACCGACTAAAACCAGCAAAGGTCCTTTCCAGTCTCAGAAA 1214
||||||||||||||||||||||..|||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct 2027 GAAAAAAGAAGAAGACTGGAAACATGTCCTCAGAATCGACTAAAACCAGCAAAGGTCCTTTCCAGTCTCAGAAA 2100
Query 1215 AAGAACTTATTCCACAAAATTGTCAGCAAATATAAGCACAAAAAGGAGAAGCCCAATGTTCCGGAAAAAGGAAG 1288
|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||||
Sbjct 2101 AAGAACTTATTCCACAAAATTGTCAGCAAATATAAGCACAAAAAGGAGAAGCCTAATGTTCCAGAAAAAGGAAG 2174
Query 1289 TGGGGATAAATGGTCAAACAAGCAACTCTTCTTGGATGCCATTCACCCTACAGAAGCCATATTTTCAGAAGACA 1362
||||||||||||||||.||||||||.|.||||||||||||||||||||||||||||||||||||||.|||||.|
Sbjct 2175 TGGGGATAAATGGTCACACAAGCAATTTTTCTTGGATGCCATTCACCCTACAGAAGCCATATTTTCCGAAGATA 2248
Query 1363 GAAACACCATGGAGCCTGTTCATAAGGTTAAAAATATCCCATCCATTTTCAACACTCCAGAGCCAACAACAACG 1436
.||.|||||..|||||||.|..|||||||||||||..||.|||||||..|||||||||||||||||||||||.|
Sbjct 2249 AAAGCACCACAGAGCCTGCTTTTAAGGTTAAAAATGCCCTATCCATTCCCAACACTCCAGAGCCAACAACAATG 2322
Query 1437 CAAGAACCTTTGGTGGGCAGCCAAAAGAGAAAAGCAAGGAAAACCAAGATTACACACCTTGTCAGGACAGCAGA 1510
||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||||||||.|||||
Sbjct 2323 CAAGAACCTTTGGTTGGCAGCCAAAAGAGAAAAGCAAGGAAAACCAAGATCACACACCTTGTCAGGACTGCAGA 2396
Query 1511 TGGCCGGGTATCACCAGCAGGAGGTACTTTGGATGACAAACCAAAGGAACAACTGCAGAGGAGTCTCCCTAAAG 1584
||||||.|||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.||||
Sbjct 2397 TGGCCGAGTATCACCAGCAGGAGGTACTTTGGATGACAAACCAAAGGAGCAACTGCAGAGGAGTCTCCCCAAAG 2470
Query 1585 CAACTGAGACAGACTGCAATGACAAATGCTCACACAACACCGAGGTCGGGGAGACGCGGAGCAGTACTCCAGAA 1658
...|||.||||.|||||..||||||.||||||||||.||| |||.|.||||.|.||||||||.||||||||.
Sbjct 2471 TCCCTGGGACATACTGCGGTGACAATTGCTCACACAGCAC---GGTTGAGGAGCCACGGAGCAGCACTCCAGAC 2541
Query 1659 ATGCCTGCCGTGTCTGCGTTCTTTAGCCTCGCTGCGCTGGCTGAAGTGGCAGCCATGGAAAATGTGCACAGAGG 1732
||||||||.||||||||||||||.|||||||||||.||||||||.||.||.||||||||.||||||||||||||
Sbjct 2542 ATGCCTGCTGTGTCTGCGTTCTTCAGCCTCGCTGCACTGGCTGAGGTTGCGGCCATGGAGAATGTGCACAGAGG 2615
Query 1733 TCAGAGGTCAACTCCGCTCACCCATGATGGACAGCCAAAAGAAATGCCGCAGGCTCCTGTACTTATTTCCTGCG 1806
.|||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||.|
Sbjct 2616 CCAGAGATCAACTCCGCTCACCCATGATGGACAGCCAAAAGAAATGCCGCAGGCTCCTGTACTTATTTCTTGTG 2689
Query 1807 CTGACCAGTGAAGCGCCCTTTCATTGTAAAACATTGTGCTTTACCTACTACCCTAGCCTTGTCTTTACCGAGGG 1880
||||||||
Sbjct 2690 CTGACCAG------------------------------------------------------------------ 2697
Query 1881 ATGC 1884
Sbjct 2698 ---- 2697
