Construct: ORF ccsbBroadEn_12321

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014499.1_s300c1, BRDN0000394935
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BBX (56987)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56987 BBX BBX high mobility group box... NM_001276286.2 100% 100%
2 human 56987 BBX BBX high mobility group box... XM_024453662.1 98.1% 98.1% 1_36del
3 human 56987 BBX BBX high mobility group box... XM_024453663.1 97.6% 97.6% 1_36del;1568_1569insGGTACTTTG
4 human 56987 BBX BBX high mobility group box... XM_024453666.1 94.7% 94.7% 1190_1191ins90;1442_1443insGGTACTTTG
5 human 56987 BBX BBX high mobility group box... XM_024453664.1 94% 94% 1_36del;1378_1379ins78
6 human 56987 BBX BBX high mobility group box... XM_024453665.1 93.4% 93.4% 1_36del;1226_1227ins90
7 human 56987 BBX BBX high mobility group box... XM_024453667.1 89.3% 89.3% 1_36del;1226_1227ins90;1288_1289ins78
8 human 56987 BBX BBX high mobility group box... NM_001142568.3 62.7% 35.9% 902_1910del;2823_2824ins70
9 human 56987 BBX BBX high mobility group box... XM_005247642.4 62.7% 35.9% 902_1910del;2823_2824ins70
10 human 56987 BBX BBX high mobility group box... XM_005247643.4 62.7% 35.9% 902_1910del;2823_2824ins70
11 human 56987 BBX BBX high mobility group box... XM_005247644.4 62.7% 35.9% 902_1910del;2823_2824ins70
12 human 56987 BBX BBX high mobility group box... XM_011513000.2 62.7% 35.9% 902_1910del;2823_2824ins70
13 human 56987 BBX BBX high mobility group box... XM_011513001.2 62.7% 35.9% 902_1910del;2823_2824ins70
14 human 56987 BBX BBX high mobility group box... XM_017006881.2 62.7% 35.9% 902_1910del;2823_2824ins70
15 human 56987 BBX BBX high mobility group box... XM_024453646.1 62.7% 35.9% 902_1910del;2823_2824ins70
16 human 56987 BBX BBX high mobility group box... XM_024453647.1 62.7% 35.9% 902_1910del;2823_2824ins70
17 human 56987 BBX BBX high mobility group box... XM_024453648.1 62.7% 35.9% 902_1910del;2823_2824ins70
18 human 56987 BBX BBX high mobility group box... XM_024453649.1 62.7% 35.9% 902_1910del;2823_2824ins70
19 human 56987 BBX BBX high mobility group box... XM_024453650.1 62.7% 35.9% 902_1910del;2823_2824ins70
20 human 56987 BBX BBX high mobility group box... XM_024453651.1 62.7% 35.9% 902_1910del;2823_2824ins70
21 human 56987 BBX BBX high mobility group box... XM_024453652.1 62.7% 35.9% 902_1910del;2823_2824ins70
22 human 56987 BBX BBX high mobility group box... XM_024453653.1 62.7% 35.9% 902_1910del;2823_2824ins70
23 human 56987 BBX BBX high mobility group box... XM_024453654.1 62.7% 35.9% 902_1910del;2823_2824ins70
24 human 56987 BBX BBX high mobility group box... XM_024453655.1 62.7% 35.9% 902_1910del;2823_2824ins70
25 human 56987 BBX BBX high mobility group box... XM_024453644.1 61.9% 35.5% 1_36del;938_1946del;2859_2860ins70
26 human 56987 BBX BBX high mobility group box... XM_024453645.1 61.6% 35.6% (many diffs)
27 human 56987 BBX BBX high mobility group box... NM_020235.7 59.5% 37% 902_1910del;2199_2200ins90;2733_2734ins70
28 human 56987 BBX BBX high mobility group box... XM_011513004.2 59.5% 37% 902_1910del;2199_2200ins90;2733_2734ins70
29 human 56987 BBX BBX high mobility group box... XM_017006882.1 59.5% 37% 902_1910del;2199_2200ins90;2733_2734ins70
30 human 56987 BBX BBX high mobility group box... XM_024453659.1 59.5% 37% 902_1910del;2199_2200ins90;2733_2734ins70
31 human 56987 BBX BBX high mobility group box... XM_024453660.1 59.5% 37% 902_1910del;2199_2200ins90;2733_2734ins70
32 human 56987 BBX BBX high mobility group box... XM_024453656.1 59.2% 36.4% (many diffs)
33 human 56987 BBX BBX high mobility group box... XM_024453657.1 58.8% 36.6% (many diffs)
34 human 56987 BBX BBX high mobility group box... XM_024453658.1 58.5% 36.7% (many diffs)
35 human 56987 BBX BBX high mobility group box... XM_024453661.1 56.1% 37.5% (many diffs)
36 mouse 70508 Bbx bobby sox HMG box containing XM_011246007.2 57.7% 31.9% (many diffs)
37 mouse 70508 Bbx bobby sox HMG box containing XM_006522543.3 57.1% 34.4% (many diffs)
38 mouse 70508 Bbx bobby sox HMG box containing XM_006522544.3 57.1% 34.4% (many diffs)
39 mouse 70508 Bbx bobby sox HMG box containing XM_006522545.3 57.1% 34.4% (many diffs)
40 mouse 70508 Bbx bobby sox HMG box containing XM_006522546.2 57.1% 34.4% (many diffs)
41 mouse 70508 Bbx bobby sox HMG box containing XM_006522547.3 57.1% 34.4% (many diffs)
42 mouse 70508 Bbx bobby sox HMG box containing XM_006522548.3 57.1% 34.4% (many diffs)
43 mouse 70508 Bbx bobby sox HMG box containing XM_006522549.3 57.1% 34.4% (many diffs)
44 mouse 70508 Bbx bobby sox HMG box containing XM_006522553.3 57.1% 34.4% (many diffs)
45 mouse 70508 Bbx bobby sox HMG box containing XM_006522554.3 57.1% 34.4% (many diffs)
46 mouse 70508 Bbx bobby sox HMG box containing XM_006522555.3 57.1% 34.4% (many diffs)
47 mouse 70508 Bbx bobby sox HMG box containing XM_011246005.2 57.1% 34.4% (many diffs)
48 mouse 70508 Bbx bobby sox HMG box containing XM_011246006.2 57.1% 34.4% (many diffs)
49 mouse 70508 Bbx bobby sox HMG box containing NM_027444.3 54% 35.4% (many diffs)
50 mouse 70508 Bbx bobby sox HMG box containing XM_011246008.2 54% 35.4% (many diffs)
51 mouse 70508 Bbx bobby sox HMG box containing XM_017317130.1 54% 35.4% (many diffs)
52 mouse 70508 Bbx bobby sox HMG box containing XM_006522560.3 53.4% 30.8% (many diffs)
53 mouse 70508 Bbx bobby sox HMG box containing XM_006522561.3 53.4% 30.8% (many diffs)
54 mouse 70508 Bbx bobby sox HMG box containing NM_001347240.1 52.1% 36.1% (many diffs)
55 mouse 70508 Bbx bobby sox HMG box containing XM_011246009.1 52.1% 36.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1953
ORF length:
1884
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAAAGGCAGT AATAGAAATA AGGATCATTC AGCAGAAGGA GAAGGGGTTG
121GAAAACGACC AAAACGAAAG TGTCTTCAGT GGCATCCATT GCTAGCAAAG AAACTTCTTG
181ATTTTTCAGA AGAGGAAGAA GAGGAAGACG AAGAGGAGGA TATTGATAAG GTTCAACTTC
241TTGGGGCCGA TGGCCTAGAG CAAGATGTTG GTGAAACTGA AGATGATGAA TCACCAGAGC
301AGCGAGCCCG GAGACCAATG AATGCATTTC TTTTATTTTG CAAACGCCAT CGCTCTCTTG
361TACGTCAGGA ACACCCCAGG CTTGATAACC GAGGTGCTAC CAAGATACTA GCTGATTGGT
421GGGCTGTTCT TGATCCAAAG GAAAAGCAGA AATACACAGA CATGGCCAAG GAGTATAAGG
481ATGCATTTAT GAAAGCAAAT CCTGGCTACA AATGGTGTCC TACCACAAAC AAGCCTGTGA
541AATCCCCAAC ACCCACTGTC AATCCACGAA AGAAACTTTG GGCCTTCCCA TCTGACTCTT
601CAAGAGACTT GCCAAGCCCC AAGAAAGCAA AGACTGAAGA AATGCCTCAG CTTAACTTTG
661GAATGGCTGA TCCTACTCAA ATGGGAGGCC TGAGTATGCT GCTGTTAGCT GGAGAACATG
721CTCTTGGCAC ACCAGAGGTA TCCTCTGGCA CATGCAGGCC TGATGTTTCA GAATCTCCTG
781AATTACGTCA GAAGTCACCA TTGTTTCAGT TTGCCGAGAT ATCTTCAAGT ACGTCCCACT
841CTGATGCTTC TACAAAGCAG TGTCAAACAT CTGCCTTGTT TCAGTTTGCA GAGATTTCTT
901CAAACACTTC GCAGTTGGGT GGTGCTGAGC CTGTAAAACG CTGTGGAAAG TCTGCACTCT
961TTCAACTGGC AGAGGAAAAC GAAGCTCAGG AAAAGGAAAC TCCTCTGATC ATGAAGGGTG
1021TTGGAATGAA GAAAGCTGGA CATTTAGTCA GAGTGGGACC AGTGGGAGCA AGAAGTTCAA
1081GAAGACAAAG CCAAAAGAAG ACTGTCTCCT TGGCTCCGCA AAGCTGGATG AAGAATTTGA
1141AAAAAAATTC AACAGCCTCC CTCAATATAG TCCTGTTACA TTTGACCGGA AATGTGTACC
1201TGTCCCAAGA AAAAAGAAGA AGACTGGAAA TGTGTCCTCA GAACCGACTA AAACCAGCAA
1261AGGTCCTTTC CAGTCTCAGA AAAAGAACTT ATTCCACAAA ATTGTCAGCA AATATAAGCA
1321CAAAAAGGAG AAGCCCAATG TTCCGGAAAA AGGAAGTGGG GATAAATGGT CAAACAAGCA
1381ACTCTTCTTG GATGCCATTC ACCCTACAGA AGCCATATTT TCAGAAGACA GAAACACCAT
1441GGAGCCTGTT CATAAGGTTA AAAATATCCC ATCCATTTTC AACACTCCAG AGCCAACAAC
1501AACGCAAGAA CCTTTGGTGG GCAGCCAAAA GAGAAAAGCA AGGAAAACCA AGATTACACA
1561CCTTGTCAGG ACAGCAGATG GCCGGGTATC ACCAGCAGGA GGTACTTTGG ATGACAAACC
1621AAAGGAACAA CTGCAGAGGA GTCTCCCTAA AGCAACTGAG ACAGACTGCA ATGACAAATG
1681CTCACACAAC ACCGAGGTCG GGGAGACGCG GAGCAGTACT CCAGAAATGC CTGCCGTGTC
1741TGCGTTCTTT AGCCTCGCTG CGCTGGCTGA AGTGGCAGCC ATGGAAAATG TGCACAGAGG
1801TCAGAGGTCA ACTCCGCTCA CCCATGATGG ACAGCCAAAA GAAATGCCGC AGGCTCCTGT
1861ACTTATTTCC TGCGCTGACC AGTGAAGCGC CCTTTCATTG TAAAACATTG TGCTTTACCT
1921ACTACCCTAG CCTTGTCTTT ACCGAGGGAT GCTTGCCAAC TTTCTTGTAC AAAGTtggca
1981ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)