Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12356
- Subject:
- NM_028198.3
- Aligned Length:
- 3614
- Identities:
- 1732
- Gaps:
- 1612
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGAGATGGAGCAAGTGAACGCGCTGTGCGAGGAGCTAGTGAAAGCGGTGACGGTCATGATGGACCCCAGCTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TACCCAGCGCTACCGGCTGGAAGCCCTCAAGTTTTGTGAAGAGTTTAAAGAAAAATGCCCTATCTGTGTTCCAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTGGCTTGAAGTTGGCTGAAAAAACACAAATTGCCATCGTCAGACATTTTGGCCTTCAGATCCTGGAGCATGTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTCAAGTTTCGATGGAACAGCATGTCCCGATTGGAGAAGGTCTATCTGAAGAACAGTGTCATGGAGCTGATCGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAATGGAACACTGAGGATTTTGGAGGAGGAGAACCACATTAAAGATGTTCTGTCTAGAATTGTGGTAGAGATGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCAAACGAGAGTGGCCACAGCACTGGCCTGACATGCTCATGGAGTTGGATACTCTCTTCAGGCAAGGGGAAACG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CAGAGGGAGTTGGTGATGTTCATCCTTCTCCGACTGGCCGAGGATGTAGTGACCTTTCAGACGCTCCCCACTCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAGAAGAAGGGATATTCAGCAAACATTGACGCAGAACATGGAAAGAATCTTGAATTTTCTACTCAATACGCTTC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGGAAAATGTAAACAAGTACCAACAAATGAAGACAGATTCATCTCAGGAGGCAGAGGCTCAAGCCAACTGTCGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTAAGCGTGGCGGCCCTGAACACTCTAGCCGGCTACATTGACTGGGTATCTTTGAACCATATCACTGCCGAGAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTGTAAACTCGTGGAGACTCTGTGCCTGCTTCTCAATGAGCAGGAGCTGCAGTTGGGAGCCGCCGAGTGTCTGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TCATTGCAGTCAGCAGAAAAGGCAAGCTGGAGGACCGGAAGCGCTTGATGATCCTGTTTGGAGATGTCGCCATG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CATTATATTCTCTCGGCCGCACAGACTGCAGATGGAGGAGGCTTGGTCGAAAAACACTACCTCTTCCTGAAGAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ACTTTGTCAGGTGTTATGTGCACTGGGAAATCTGCTATGTGCACTGCTGGCCTTAGATGCTAACATACAAACAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CTATAAACTTTGGAATGTACCTGGAATCTTTTCTTGCTTTCACAACCCATCCAAGTCAGTTTTTACGCTCTTCA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ACCCATATGACGTGGGGAGCCCTCTTCAGGCATGAAGTTCTGTCCCGTGATCCGGCACTGTTAGCAGTAATACC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AAAATATCTTCGTGCTTCTATGACAAACTTGGTCAAGATGGGCTTTCCTTCTAAAACAGATAGCCCCAGCTGTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AATATTCCCGATTTGATTTCGATAGTGATGAGGACTTCAATGCTTTCTTCAACTCCTCCCGAGCCCAGCATGGA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GAGGTGGTGAGGTGTGTGTGTCGACTGGATCCTAAGACTAGCTTCCAGATGGCGGCAGAATGGCTCAAGTATCA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GCTGTCAGCTTCTATTGACACTGGACCTGTGAACTCATGTTCTACAGCTGGAACTGGAGAGGGAGGCTTCTGCT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CCATCTTCTCACCTTCATATGTGCAGTGGGAAGCTATGACTTTTTTTTTGGAAAGTGTGATCAACCAGATGTTT 1554
Query 1 ------------------------------------------------------ATGGTTCTGAACTTTGATAC 20
.||||..||||||||||.|.
Sbjct 1555 CGAACACTAGACAAAGAAGAGCTCCCGGTTAGTGATGGGATAGAGCTGCTGCAGCTGGTGTTGAACTTTGAAAT 1628
Query 21 CAAGGATCCCCTCATCCTGTCCTGCGTCCTTACTAATGTCTCTGCACTCTTTCCATTTGTCACCTACAGACCAG 94
|||||||||||||.||||||||||||||||.|||||||||||.||.|||||.|||||||||||.||||..||.|
Sbjct 1629 CAAGGATCCCCTCGTCCTGTCCTGCGTCCTCACTAATGTCTCAGCGCTCTTCCCATTTGTCACATACAAGCCTG 1702
Query 95 AGTTCCTGCCCCAGGTCTTCTCTAAGCTATTTTCATCTGTCACTTTTGAAACTGTTGAAGAAAGTAAGGCCCCC 168
.||||.||||||||||||||||||||||.|||||||.|||.|||||||||.||||||..|||||||||||||||
Sbjct 1703 CGTTCTTGCCCCAGGTCTTCTCTAAGCTCTTTTCATTTGTTACTTTTGAATCTGTTGGGGAAAGTAAGGCCCCC 1776
Query 169 AGAACCCGGGCAGTGAGGAATGTGAGGAGGCATGCTTGTTCCTCCATCATCAAGATGTGTCGTGACTACCCCCA 242
||.||.||||||||.||||||||.|||||.|||||||||||||||||||.||||||||||||.||||||||..|
Sbjct 1777 AGGACTCGGGCAGTCAGGAATGTAAGGAGACATGCTTGTTCCTCCATCAACAAGATGTGTCGGGACTACCCAGA 1850
Query 243 GCTTGTGCTGCCCAATTTTGACATGCTTTATAACCATGTGAAGCAACTCCTCTCCAATGAGCTACTCCTGACAC 316
.|||||.|||||||||||||||||||||||||.|||.||||||||||||||||||||||||||.||||||||.|
Sbjct 1851 CCTTGTTCTGCCCAATTTTGACATGCTTTATAGCCACGTGAAGCAACTCCTCTCCAATGAGCTCCTCCTGACCC 1924
Query 317 AAATGGAGAAGTGTGCCCTCATGGAAGCCCTGGTTCTCATTAGCAACCAATTTAAGAACTACGAGCGTCAGAAG 390
|.|||||||||||.||||||||||||||.|||||||||.|||||||||||||.|||.|.||.|||||.||||||
Sbjct 1925 AGATGGAGAAGTGCGCCCTCATGGAAGCTCTGGTTCTCGTTAGCAACCAATTCAAGGATTATGAGCGGCAGAAG 1998
Query 391 GTGTTCCTAGAGGAGCTGATGGCACCAGTGGCCAGCATCTGGCTTTCTCAAGACATGCACAGAGTGCTGTCAGA 464
.|.|||||||||||||||||||||||.||||.||.|||||||||||||.||||.|||..|||||.|||||||||
Sbjct 1999 TTATTCCTAGAGGAGCTGATGGCACCGGTGGTCAACATCTGGCTTTCTGAAGAAATGTGCAGAGCGCTGTCAGA 2072
Query 465 TGTTGATGCTTTCATTGCGTATGTGGGTACAGATCAGAAGAGCTGTGACCCAGGCCTGGAGGATCCGTGTGGCT 538
|.||||..|.||||||||.|||||||||.|.||||.|||.|||||||||||||...||||||||||.|||||||
Sbjct 2073 TATTGACTCCTTCATTGCCTATGTGGGTGCTGATCTGAAAAGCTGTGACCCAGCTGTGGAGGATCCATGTGGCT 2146
Query 539 TAAACCGTGCACGAATGAGCTTTTGTGTATACAGCATTCTGGGTGTGGTGAAACGAACTTGCTGGCCCACTGAC 612
|.||||||||||||||||||||||||||.||||||||.|||||.||..|||.|||.|||.|||||||..|.|||
Sbjct 2147 TGAACCGTGCACGAATGAGCTTTTGTGTGTACAGCATCCTGGGGGTTATGAGACGCACTAGCTGGCCTTCCGAC 2220
Query 613 CTAGAAGAGGCCAAAGCTGGGGGATTTGTGGTGGGTTATACATCCAGTGGAAATCCAATCTTCCGTAACCCCTG 686
||||||||.||||||||||||||.|||||||||||.||.|||.|||||||||||||.|||||||||||||||||
Sbjct 2221 CTAGAAGAAGCCAAAGCTGGGGGCTTTGTGGTGGGCTACACACCCAGTGGAAATCCCATCTTCCGTAACCCCTG 2294
Query 687 CACAGAGCAGATTCTGAAACTTCTTGACAATTTGCTTGCGCTTATAAGAACCCACAATACATTATATGCACCAG 760
||||||||||||.||.|.||||||.||||||||||||||.|||.|||||||.||||||||.||||||.||||.|
Sbjct 2295 CACAGAGCAGATCCTCAGACTTCTCGACAATTTGCTTGCCCTTGTAAGAACTCACAATACTTTATATACACCGG 2368
Query 761 AAATGCTAGCCAAAATGGCAGAGCCTTTCACCAAGGCTCTGGATATGCTTGACGCGGAAAAATCTGCTATATTA 834
||||||||.|.|||||||||||.|||||||||||||||||||||||..||||..|.||||||.|.||.||||||
Sbjct 2369 AAATGCTAACGAAAATGGCAGAACCTTTCACCAAGGCTCTGGATATAGTTGAATCTGAAAAAACGGCAATATTA 2442
Query 835 GGATTACCTCAACCTCTCTTGGAACTCAATGACTCTCCTGTCTTCAAAACCGTCT-TGGAAAGAATGCAGCGTT 907
|||||||||||.||||||||||||.||||.|||...|||||||..|.|||| .|| ||||.||.||||||||.|
Sbjct 2443 GGATTACCTCAGCCTCTCTTGGAATTCAACGACCACCCTGTCTATAGAACC-ACTCTGGAGAGGATGCAGCGGT 2515
Query 908 TCTTCTCTACCCTCTATGAAAACTGTTTTCATATCCTAGGGAAGGCAGGCCCTTCCATGCAGCAAGACTTCTAT 981
||||....|..||||||||||||||||..||||||||||||||||||||||||||||||||||||||.|||||.
Sbjct 2516 TCTTTGGCATTCTCTATGAAAACTGTTACCATATCCTAGGGAAGGCAGGCCCTTCCATGCAGCAAGATTTCTAC 2589
Query 982 ACTGTGGAGGACCTTGCTACCCAGCTTCTCAGCTCAGCCTTTGTCAACTTGAACAATATTCCTGACTACCGACT 1055
||||||||||||||||||.|||||||.||..|.|||||.||.|||||||||||||||||||||||||.|||.||
Sbjct 2590 ACTGTGGAGGACCTTGCTTCCCAGCTCCTTGGATCAGCTTTCGTCAACTTGAACAATATTCCTGACTTCCGGCT 2663
Query 1056 CAGACCCATGCTTCGTGTCTTTGTAAAGCCTCTGGTGCTCTTCTGTCCCCCAGAGCACTATGAAGCCCTGGTAT 1129
.|||.|.||||||||||||||.||.|||||.||.|||||||||||.|||.||||.|||||||||.|||||.|||
Sbjct 2664 TAGATCTATGCTTCGTGTCTTCGTGAAGCCCCTCGTGCTCTTCTGCCCCTCAGAACACTATGAAACCCTGATAT 2737
Query 1130 CCCCCATCCTCGGACCTCTTTTCACCTACCTCCATATGAGGCTTTCTCAGAAATGGCAAGTTATCAACCAAAGG 1203
|.||||||||.||||||||.||||||||||||||.||||||||.||||||||.|||||.||.||||||||.|||
Sbjct 2738 CTCCCATCCTTGGACCTCTCTTCACCTACCTCCACATGAGGCTCTCTCAGAAGTGGCATGTCATCAACCAGAGG 2811
Query 1204 AGCCTGCTGTGTGGAGAAGATGAGGCTGCAGATGAAAACCCAGAGTCTCAAGAGATGCTGGAGGAGCAACTGGT 1277
|||.|.||||||||||||||||||..||||||.||.|||||.||||||||.||.|||||.|||||.||.|||||
Sbjct 2812 AGCATCCTGTGTGGAGAAGATGAGATTGCAGAGGACAACCCCGAGTCTCAGGAAATGCTCGAGGAACAGCTGGT 2885
Query 1278 GAGGATGTTAACCCGAGAAGTCATGGACCTAATCACGGTTTGCTGTGTTTCAAAGAAGGGTGCTGACCACAGTA 1351
|||||||.|.||||||||||.||||||||||||||.||.|||||||||.||.||||||..|||.||||||| .|
Sbjct 2886 GAGGATGCTCACCCGAGAAGCCATGGACCTAATCATGGCTTGCTGTGTGTCGAAGAAGACTGCCGACCACA-CA 2958
Query 1352 G-TGCTCCCCCAGCAGATGGAGACGATGAAGAAATGATGGCCACAGAGGTCACCCCCTCAGCTATGGCAGAGCT 1424
| .||||||.|.|||||||||||.||||||||.|||||||||||.||.||..|||||||..||.|||..|||||
Sbjct 2959 GCCGCTCCCACTGCAGATGGAGATGATGAAGAGATGATGGCCACTGAAGTAGCCCCCTCGTCTGTGGTGGAGCT 3032
Query 1425 TACAGACCTGGGCAAATGTCTGATGAAGCATGAGGATGTTTGTACAGCGCTATTAATTACAGCCTTCAATTCCC 1498
.|||||||||||||||||.||.||||||||.||||||||.||.|||||.||..||||.|||||.||.|||||.|
Sbjct 3033 CACAGACCTGGGCAAATGCCTCATGAAGCACGAGGATGTCTGCACAGCACTGCTAATCACAGCATTTAATTCTC 3106
Query 1499 TGGCCTGGAAAGATACTCTGTCCTGCCAGAGGACAACCTCACAGCTCTGCTGGCCTCTCCTCAAACAAGTGCTG 1572
||.|||||||.||.||.|||||.|||||||||.|.|||.||||||||||||||||.|||||||||||.|||.||
Sbjct 3107 TGACCTGGAAGGACACACTGTCTTGCCAGAGGGCTACCACACAGCTCTGCTGGCCCCTCCTCAAACAGGTGATG 3180
Query 1573 TCAGGGACACTGCTCGCAGATGCAGTTACGTGGCTTTTCACCAGTGTGCTGAAAGGCTTACAGATGCACGGGCA 1646
||.|||||.|||||||||||.||.||.||.||||||||||||||||||||||||||..|.||||||||||||||
Sbjct 3181 TCTGGGACCCTGCTCGCAGACGCTGTCACTTGGCTTTTCACCAGTGTGCTGAAAGGACTGCAGATGCACGGGCA 3254
Query 1647 GCACGACGGGTGCATGGCTTCCCTGGTCCATCTGGCCTTCCAGATATACGAGGCACTGCGCCCCAGGTACCTGG 1720
||||||.|||||||||||||||||||||||..||||||||||||||||||||||.|||||||||||||||||.|
Sbjct 3255 GCACGATGGGTGCATGGCTTCCCTGGTCCACTTGGCCTTCCAGATATACGAGGCGCTGCGCCCCAGGTACCTAG 3328
Query 1721 AGATAAGAGCTGTAATGGAGCAAATCCCTGAAATACAGAAGGACTCACTGGACCAGTTTGACTGCAAGCTTTTA 1794
||||||||||.|||||||||||.||||||||||||.|.|||||.||.||||||||.||||||||||||||||||
Sbjct 3329 AGATAAGAGCAGTAATGGAGCAGATCCCTGAAATAAACAAGGAGTCTCTGGACCAATTTGACTGCAAGCTTTTA 3402
Query 1795 AACCCCTCCCTGCAGAAAGTGGCTGACAAGCGCCGAAAGGACCAATTCAAACGCCTCATTGCTGGTTGCATTGG 1868
|||||||||||.||.||||..|||||.||.||.||.||||||||.||||||||.||.||.|||||.||||||||
Sbjct 3403 AACCCCTCCCTTCAAAAAGCAGCTGATAAACGACGGAAGGACCACTTCAAACGTCTAATCGCTGGCTGCATTGG 3476
Query 1869 GAAACCCTTGGGAGAGCAGTTCCGAAAAGAAGTTCACATTAAGAATCTTCCCTCACTTTTCAAAAAAACAAAGC 1942
|||||||||||||||.|||||||||||||||||||||||||||||.|||||||..||||||||||||.|.||.|
Sbjct 3477 GAAACCCTTGGGAGAACAGTTCCGAAAAGAAGTTCACATTAAGAACCTTCCCTGGCTTTTCAAAAAACCCAAAC 3550
Query 1943 CAATGCTGGAGACGGAGGTGCTGGACAATGATGGGGGTGGCCTGGCCACCATCTTTGAACCC 2004
|||||.|||||||.||.||||||||||.|||.|.||||||.|||||||||||||||||||||
Sbjct 3551 CAATGTTGGAGACAGAAGTGCTGGACAGTGAGGAGGGTGGACTGGCCACCATCTTTGAACCC 3612
