Construct: ORF ccsbBroadEn_12356
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009293.1_s300c1, BRDN0000391187
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- XPO5 (57510)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57510 | XPO5 | exportin 5 | NM_020750.3 | 55.4% | 55.4% | 1_1608del |
| 2 | human | 57510 | XPO5 | exportin 5 | NR_144392.1 | 36.4% | 1_1819del;2372_2509del;3962_5502del | |
| 3 | mouse | 72322 | Xpo5 | exportin 5 | NM_028198.3 | 47.9% | 48.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2070
- ORF length:
- 2004
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT TCTGAACTTT GATACCAAGG ATCCCCTCAT CCTGTCCTGC GTCCTTACTA 121 ATGTCTCTGC ACTCTTTCCA TTTGTCACCT ACAGACCAGA GTTCCTGCCC CAGGTCTTCT 181 CTAAGCTATT TTCATCTGTC ACTTTTGAAA CTGTTGAAGA AAGTAAGGCC CCCAGAACCC 241 GGGCAGTGAG GAATGTGAGG AGGCATGCTT GTTCCTCCAT CATCAAGATG TGTCGTGACT 301 ACCCCCAGCT TGTGCTGCCC AATTTTGACA TGCTTTATAA CCATGTGAAG CAACTCCTCT 361 CCAATGAGCT ACTCCTGACA CAAATGGAGA AGTGTGCCCT CATGGAAGCC CTGGTTCTCA 421 TTAGCAACCA ATTTAAGAAC TACGAGCGTC AGAAGGTGTT CCTAGAGGAG CTGATGGCAC 481 CAGTGGCCAG CATCTGGCTT TCTCAAGACA TGCACAGAGT GCTGTCAGAT GTTGATGCTT 541 TCATTGCGTA TGTGGGTACA GATCAGAAGA GCTGTGACCC AGGCCTGGAG GATCCGTGTG 601 GCTTAAACCG TGCACGAATG AGCTTTTGTG TATACAGCAT TCTGGGTGTG GTGAAACGAA 661 CTTGCTGGCC CACTGACCTA GAAGAGGCCA AAGCTGGGGG ATTTGTGGTG GGTTATACAT 721 CCAGTGGAAA TCCAATCTTC CGTAACCCCT GCACAGAGCA GATTCTGAAA CTTCTTGACA 781 ATTTGCTTGC GCTTATAAGA ACCCACAATA CATTATATGC ACCAGAAATG CTAGCCAAAA 841 TGGCAGAGCC TTTCACCAAG GCTCTGGATA TGCTTGACGC GGAAAAATCT GCTATATTAG 901 GATTACCTCA ACCTCTCTTG GAACTCAATG ACTCTCCTGT CTTCAAAACC GTCTTGGAAA 961 GAATGCAGCG TTTCTTCTCT ACCCTCTATG AAAACTGTTT TCATATCCTA GGGAAGGCAG 1021 GCCCTTCCAT GCAGCAAGAC TTCTATACTG TGGAGGACCT TGCTACCCAG CTTCTCAGCT 1081 CAGCCTTTGT CAACTTGAAC AATATTCCTG ACTACCGACT CAGACCCATG CTTCGTGTCT 1141 TTGTAAAGCC TCTGGTGCTC TTCTGTCCCC CAGAGCACTA TGAAGCCCTG GTATCCCCCA 1201 TCCTCGGACC TCTTTTCACC TACCTCCATA TGAGGCTTTC TCAGAAATGG CAAGTTATCA 1261 ACCAAAGGAG CCTGCTGTGT GGAGAAGATG AGGCTGCAGA TGAAAACCCA GAGTCTCAAG 1321 AGATGCTGGA GGAGCAACTG GTGAGGATGT TAACCCGAGA AGTCATGGAC CTAATCACGG 1381 TTTGCTGTGT TTCAAAGAAG GGTGCTGACC ACAGTAGTGC TCCCCCAGCA GATGGAGACG 1441 ATGAAGAAAT GATGGCCACA GAGGTCACCC CCTCAGCTAT GGCAGAGCTT ACAGACCTGG 1501 GCAAATGTCT GATGAAGCAT GAGGATGTTT GTACAGCGCT ATTAATTACA GCCTTCAATT 1561 CCCTGGCCTG GAAAGATACT CTGTCCTGCC AGAGGACAAC CTCACAGCTC TGCTGGCCTC 1621 TCCTCAAACA AGTGCTGTCA GGGACACTGC TCGCAGATGC AGTTACGTGG CTTTTCACCA 1681 GTGTGCTGAA AGGCTTACAG ATGCACGGGC AGCACGACGG GTGCATGGCT TCCCTGGTCC 1741 ATCTGGCCTT CCAGATATAC GAGGCACTGC GCCCCAGGTA CCTGGAGATA AGAGCTGTAA 1801 TGGAGCAAAT CCCTGAAATA CAGAAGGACT CACTGGACCA GTTTGACTGC AAGCTTTTAA 1861 ACCCCTCCCT GCAGAAAGTG GCTGACAAGC GCCGAAAGGA CCAATTCAAA CGCCTCATTG 1921 CTGGTTGCAT TGGGAAACCC TTGGGAGAGC AGTTCCGAAA AGAAGTTCAC ATTAAGAATC 1981 TTCCCTCACT TTTCAAAAAA ACAAAGCCAA TGCTGGAGAC GGAGGTGCTG GACAATGATG 2041 GGGGTGGCCT GGCCACCATC TTTGAACCCT GCCCAACTTT CTTGTACAAA GTtggcatta 2101 taagaaagca ttgcttatca atttgttgca acgaac