Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12385
- Subject:
- XR_001748820.1
- Aligned Length:
- 4545
- Identities:
- 111
- Gaps:
- 4434
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAAGTCTCACGGCCGGAGTTGGTGGTCTGGGAACCCACGTGGGCTGGGTTTCGGATTGCTCTGCTGGTCCGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCTGGAGCGCCCACCCTGGCCTAGTCGCCATGGGGAAGCTGCGCCGGCGCTACAACATCAAGGGGCGCCAGCAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCGGGCCCCGGACCCTCGAAGGGCCCCCCCGAGCCGCCCCCCGTGCAGCTGGAACTGGAGGACAAGGACACGTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAAGGGAGTTGATGCAAGCAACGCGCTCGTTCTACCGGGGAAGAAGAAAAAGAAGACCAAAGCCCCTCCCCTGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CGAAGAAGGAGAAGAAGCCTCTGACCAAGAAGGAGAAGAAAGTGCTGCAGAAAATCTTAGAACAGAAGGAGAAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGAGCCAGCGAGCAGAGATGCTACAGAAGCTGAGTGAAGTCCAGGCTTCCGAAGCTGAGATGAGACTCTTTTA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TACCACTTCCAAGCTAGGCACTGGGAACCGCATGTATCACACCAAAGAGAAGGCTGACGAGGTGGTAGCCCCGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCAGGAGAAGATCAGTAGCCTCAGCGGTGCCCACCGGAAGCGTCGCCGCTGGCCCTCAGCTGAGGAGGAGGAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGGAGGAGGAGGAGTCGGAATCGGAGCTGGAGGAGGAGTCGGAGCTGGACGAGGACCCAGCTGCTGAGCCGGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGAGGCTGGTGTGGGGACCACCGTGGCACCTCTGCCGCCAGCTCCAGCACCCAGCAGTCAGCCCGTGCCGGCTG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGATGACTGTTCCTCCTCCTCCAGCTGCAGCCCCACCACTGCCCAGGGCCCTGGCTAAGCCCGCCGTCTTCATC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CCCGTGAACCGCTCCCCGGAAATGCAGGAGGAACGGCTGAAGCTCCCAATTCTCTCCGAAGAACAAGTAATCAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGAGGCTGTGGCCGAGCACCCCATCGTCATCGTGTGTGGTGAGACCGGCAGCGGGAAGACCACACAGGTGCCTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGTTTCTCTATGAAGCAGGCTTCAGCAGTGAAGACAGCATCATCGGTGTCACGGAGCCCCGCCGAGTGGCCGCC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GTGGCCATGTCCCAGCGAGTGGCCAAGGAGATGAATCTGTCCCAGCGGGTCGTCTCCTACCAGATCCGGTATGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGGAAACGTGACAGAGGAGACCAGAATCAAGTTCATGACGGATGGTGTGCTGCTTAAAGAAATCCAGAAGGACT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCCTGCTGCTGCGGTACAAGGTGGTGATCATCGACGAGGCCCACGAGAGGAGCGTGTACACGGACATCCTCATC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GGCCTCCTGTCCCGCATTGTGACTCTCCGGGCTAAGAGGAACCTGCCACTCAAGCTGCTCATCATGTCGGCCAC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCTGCGGGTGGAGGACTTCACCCAGAACCCACGGCTCTTCGCCAAGCCGCCGCCGGTCATCAAGGTGGAATCCA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GGCAGTTCCCAGTGACTGTGCATTTCAACAAGCGGACACCGCTGGAAGACTACAGTGGCGAGTGCTTCCGGAAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GTCTGCAAGATCCACCGGATGCTGCCCGCAGGTGGCATCCTGGTGTTCCTGACGGGGCAGGCTGAGGTGCATGC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GCTGTGCCGCAGGCTCAGGAAGGCTTTCCCACCCTCCAGAGCCCGGCCACAAGAAAAGGACGACGATCAGAAAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ACTCGGTGGAGGAAATGCGGAAGTTTAAGAAGTCAAGGGCCAGGGCCAAGAAGGCGCGGGCTGAGGTGCTGCCC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAGATCAACTTGGATCATTACTCGGTGTTACCGGCAGGCGAAGGCGATGAGGACAGGGAGGCAGAAGTGGATGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GGAAGAGGGGGCCCTGGACTCCGACCTCGATCTGGACCTGGGGGATGGCGGGCAAGATGGAGGTGAGCAGCCGG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ATGCCTCCCTCCCGCTCCACGTGCTCCCGCTGTACTCTCTGCTGGCCCCAGAGAAGCAAGCACAGGTCTTTAAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCTCCACCGGAGGGGACTCGGTTGTGTGTTGTGGCCACCAATGTGGCCGAGACGTCGCTTACCATCCCTGGCAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CAAGTACGTGGTGGACTGTGGGAAGGTCAAGAAACGCTACTACGACCGCGTCACTGGCGTATCCTCCTTCCGTG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TCACCTGGGTCTCCCAGGCATCAGCTGACCAGCGAGCGGGCAGAGCAGGACGGACGGAGCCCGGCCACTGCTAC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AGGCTGTATTCATCTGCGGTTTTTGGTGACTTCGAGCAGTTTCCTCCTCCAGAAATCACCCGGAGGCCTGTTGA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AGACTTAATCCTTCAAATGAAGGCGCTCAACGTTGAAAAGGTCATCAACTTCCCCTTCCCGACGCCCCCCTCCG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TGGAAGCCCTTCTTGCCGCCGAGGAGCTGTTGATCGCACTGGGTGCCCTGCAACCGCCCCAGAAAGCAGAAAGG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GTGAAGCAACTGCAGGAGAACCGGCTGAGCTGCCCCATCACTGCGCTGGGCCGGACAATGGCCACATTCCCCGT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GGCACCCCGCTACGCTAAGATGCTGGCACTGAGCCGACAACACGGCTGCCTGCCCTATGCCATCACCATCGTGG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCAGCATGACGGTGCGGGAGCTGTTTGAGGAGCTGGACAGACCAGCGGCCAGTGACGAGGAGCTCACCAGGCTG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AAGAGCAAGCGGGCCCGGGTGGCCCAGATGAAGAGGACCTGGGCAGGGCAGGGGGCTTCTCTGAAGCTCGGCGA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CCTCATGGCGCCGTGGGAGCCTGTGAGTATGCCAGCTGCACACCCCAGTTTTGCGAAGCCAACGGGCTGCGGTA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CAAAGCCATGATGGAGATCCGGCGCCTGCGGGGCCAGCTGACCACCGCAGTCAATGCCGTGTGCCCCGAGGCTG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AGCTCTTCGTGGATCCCAAGATGCAGCCGCCCACCGAGAGCCAGGTGACCTACCTGCGACAGATCGTGACGGCA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GGCCTGGGGGACCACTTGGCCCGCAGGGTCCAGAGCGAGGAGATGCTGGAGGACAAGTGGAGGAACGCCTACAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GACCCCTCTCCTCGACGACCCTGTCTTCATCCACCCCAGCTCCGTCCTTTTCAAAGAGCTCCCCGAGTTTGTGG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TCTACCAGGAAATCGTGGAGACCACTAAGATGTACATGAAAGGCGTCTCTAGCGTGGAGGTCCAGTGGATCCCG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GCCCTGCTGCCCTCTTACTGCCAGTTTGACAAGCCCCTGGAGGAACCAGCCCCTACATACTGCCCCGAGCGGGG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GCGGGTGCTGTGTCACCGGGCCAGCGTGTTCTATCGCGTGGGCTGGCCGCTCCCCGCCATCGAGGTGGATTTTC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CAGAGGGGATTGACCGCTACAAGCACTTTGCCCGGTTCCTGCTGGAAGGGCAGGTCTTCCGCAAGCTGGCCTCA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TACCGGAGCTGTCTGCTGTCCAGCCCCGGCACCATGCTGAAGACGTGGGCCAGGCTGCAGCCCCGTACGGAGAG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CCTTCTGCGAGCCCTGGTTGCAGAGAAGGCTGACTGCCATGAAGCCTTGCTGGCTGCTTGGAAGAAAAACCCCA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AATACCTGCTGGCTGAGTACTGTGAGTGGCTTCCACAGGCCATGCACCCCGATATCGAGAAAGCCTGGCCCCCC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 ACCACTGTCCACTGACCAGAAACCTGGCTGCAGGGCCGAGGACTGGTTTGGGGACTGGAGGGCTGGCAGCAGCC 3626
Query 1 ----------------------------ATGGGCTTCGTGGCCTGCTCTCAGGAAGTGGGTCAAGCCCTGGGAA 46
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 TGTCACCGTGCGACCGTGACCACCTGGCATGGGCTTCGTGGCCTGCTCTCAGGAAGTGGGTCAAGCCCTGGGAA 3700
Query 47 CCCTCATCCATGAGAGCTCGATCCCGTATGAAGGGTGCTGCCGCCCGTGCCATCTGGCCCGGGGG--------- 111
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 CCCTCATCCATGAGAGCTCGATCCCGTATGAAGGGTGCTGCCGCCCGTGCCATCTGGCCCGGGGGTGACTTTTT 3774
Query 112 -------------------------------------------------------------------------- 111
Sbjct 3775 GAACTGTTTATTATATGGTGGATGATGATTTCATCTCACGTGCTGGACGCTGTTCTGTTCAGTGTGCTCTTTGG 3848
Query 112 -------------------------------------------------------------------------- 111
Sbjct 3849 ACTACATTAGTCCCCTGTGGAGCAGCAGGGCTGGAGATCTCTGCAGTCCCTTCCCCGCCCGCCCTGCCAGAAGG 3922
Query 112 -------------------------------------------------------------------------- 111
Sbjct 3923 CCGAGGAGGCACGTGGAGGGCCTCCTTCCTGCAATTCTTCCCTCTCCAGAGTCAGGGAGGGCTGCCCAGCCCTG 3996
Query 112 -------------------------------------------------------------------------- 111
Sbjct 3997 GCCTCACAGCCGTCCCAGATGTTAGGTGAGCCACTGAGCTCTGTGTTGACCTTGAGGGGCCTGGCTGGGGGCCC 4070
Query 112 -------------------------------------------------------------------------- 111
Sbjct 4071 CCAGGCTCCATGCCTTCTTGGGAGGGTGGCCGCCAACGCCTTTCCTGTGTTATGGCAACAGGGAGTGGGCATCT 4144
Query 112 -------------------------------------------------------------------------- 111
Sbjct 4145 CATCTGCCTGTGGTCAGCTCTCAGACGGCAGGGAGCGGAGCTGACGTTGGCTGTGCTTGGTCACCGCTGCCATG 4218
Query 112 -------------------------------------------------------------------------- 111
Sbjct 4219 CCGCAGAGGATGCGCCTAGCTGGGCTGGGGCCACACGACTATTATGTTGGCCTTGAACGGGGACTGCAGAGCCC 4292
Query 112 -------------------------------------------------------------------------- 111
Sbjct 4293 TCAGTTTGTCTCCCTTGTTCCTCTGTGGCTGAGGTGGGAGGGGGAGGGTGGGGTAGGTCCCCCAGCAAGAAAGA 4366
Query 112 -------------------------------------------------------------------------- 111
Sbjct 4367 GGGACAGGAGCACCCCAGGCAGGACCAAGGAGTCGGGAGGCCCCTGCCTTCTGTCCTCCATGGTGAGGGCACAG 4440
Query 112 -------------------------------------------------------------------------- 111
Sbjct 4441 ATGTCTCCCCAGAGCCCAGCGCTGGCAGAATGGATTCTGCTCCTGGCTTTGCTTCTGCGGCTTCGGTGGAGACA 4514
Query 112 ------------------------------- 111
Sbjct 4515 GTTATGGAATAAAATGTTCCTTGCACCCAGA 4545
