Construct: ORF ccsbBroadEn_12385
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015843.1_s300c1, BRDN0000393418
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DHX37 (57647)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57647 | DHX37 | DEAH-box helicase 37 | XR_001748820.1 | 2.4% | 1_3654del;3766_4545del | |
| 2 | human | 57647 | DHX37 | DEAH-box helicase 37 | XR_001748819.1 | 2.4% | 1_3701del;3813_4592del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 177
- ORF length:
- 111
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG CTTCGTGGCC TGCTCTCAGG AAGTGGGTCA AGCCCTGGGA ACCCTCATCC 121 ATGAGAGCTC GATCCCGTAT GAAGGGTGCT GCCGCCCGTG CCATCTGGCC CGGGGGTGCC 181 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 241 aac