Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_12439
• Subject: XR_384928.3
• Aligned Length: 4086
• Identities: 2637
• Gaps: 1016

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAGGCAACCATCCTCCATATCTGCAACCACGCATCTCTGCCCATGGGTTCCTCAATCACGCAGCCGTTTCCTGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCTCTCTGGCTACAAAGCCCCAGCCAGTTCCCACAACACGCAGTTCTTTATCCCTGACTCCCTGTTAACACAGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCGAAGTTCCCAGCTCCAGGTGCAAACACCCGGAGCCCTGGGCCCGCCCGTCGGCCTGCGCTGCGCACTACAAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCCCACGATGCCGCGCCACCGCCCCCCCGGCTTCCGGTGCTGCGCAGTTTCCGGAGCGGATCGCAACCCGGAGT  296

Query    1  -----------------------------------------ATGGCTGAAGATGGGAGCGAAGAGATCATGTTC  33
                                                     ||||||||||||||.||.||.|||||||||||.
Sbjct  297  CCGGATCCGACCCCGCTCTGCACATTCCACAGGTATCAGCAATGGCTGAAGATGGTAGTGAGGAGATCATGTTT  370

Query   34  ATCTGGTGTGAAGACTGCAGCCAGTACCACGACTCCGAATGTCCCGAGCTGGGCCCAGTGGTCATGGTCAAAGA  107
            |||||||||||||||||||||||||||||.|||||.||.|||||.||.|||||.||.||||||||||||||.||
Sbjct  371  ATCTGGTGTGAAGACTGCAGCCAGTACCATGACTCGGAGTGTCCTGAACTGGGACCTGTGGTCATGGTCAAGGA  444

Query  108  CTCCTTTGTGTTAAGCAGGGCAAGGTCATCCCTTCCTCCCAACTTGGAGATCAGACGACTGGAAGATGGAGCCG  181
            ||||||||||.|.||||||||||||||.|||||.||..|.|||.||||||||||.||.|||||.||.||.||.|
Sbjct  445  CTCCTTTGTGCTGAGCAGGGCAAGGTCCTCCCTCCCCTCTAACCTGGAGATCAGGCGCCTGGATGACGGGGCTG  518

Query  182  AGGGGGTGTTCGCCATCACTCAGCTCGTCAAGCGGACACAGTTCGGTCCCTTTGAGTCCAGGAGGGTCGCCAAA  255
            |.||.|||||.||..|.||.|||||.||||||||.|||||.||.|||||.||||||||||||||.||||||||.
Sbjct  519  AAGGCGTGTTTGCAGTGACCCAGCTAGTCAAGCGCACACAATTTGGTCCGTTTGAGTCCAGGAGAGTCGCCAAG  592

Query  256  TGGGAAAAGGAGTCTGCATTTCCCCTGAAGGTGTTCCAGAAGGACGGGCACCCCGTGTGCTTCGACACCTCCAA  329
            |||||.||.|||||.||||||||.||||||||.||.||||||||||||||.||.||||||||||||||.|||||
Sbjct  593  TGGGAGAAAGAGTCGGCATTTCCTCTGAAGGTATTTCAGAAGGACGGGCATCCTGTGTGCTTCGACACTTCCAA  666

Query  330  CGAGGATGACTGCAACTGGATGATGCTGGTGCGGCCAGCGGCGGAGGCCGAGCACCAGAACCTGACGGCCTACC  403
            .||||||||||||||||||||||||||.|||||.|||||...||||.|.|.|||||||||||||||.|||||||
Sbjct  667  TGAGGATGACTGCAACTGGATGATGCTAGTGCGACCAGCACTGGAGCCTGGGCACCAGAACCTGACAGCCTACC  740

Query  404  AGCACGGCAGCGACGTGTACTTCACCACCTCCAGAGACATCCCCCCGGGTACCGAGCTGCGCGTGTGGTATGCG  477
            |.||.|||||.||||||||.|||||||||||.|..|||||.||..|.||.||.||.|||||.|||||||||||.
Sbjct  741  AACATGGCAGTGACGTGTATTTCACCACCTCAAAGGACATTCCTGCAGGCACTGAACTGCGTGTGTGGTATGCT  814

Query  478  GCCTTCTATGCCAAGAAGATGGACAAGCCCATGCTGAAGCAGGCCGGCTCTGGCGTCCACGCTGCAGGCACCCC  551
            |||||.|||||||||||||||||||||||||||||.|||||||||.||||..|.||.||.||||||||||||||
Sbjct  815  GCCTTTTATGCCAAGAAGATGGACAAGCCCATGCTAAAGCAGGCCTGCTCCAGTGTTCAGGCTGCAGGCACCCC  888

Query  552  AGAAAACAGCGCCCCCGTGGAGTCGGAACCCAGCCAGTGGGCGTGTAAAGTGTGTTCTGCCACCTTCCTGGAGC  625
            .||...|||.|.|.|.|||||..|.||.|...||||.||||.||||||.|||||.||...||||||||||||||
Sbjct  889  TGAGCCCAGTGTCTCTGTGGAACCTGAGCGTGGCCAATGGGTGTGTAAGGTGTGCTCCAACACCTTCCTGGAGC  962

Query  626  TGCAGCTCCTCAATGAACATCTGTTGGGCCACTTAGAACAAGCCAAAAGCCTTCCTCCAGGCAGCCA-AAGC--  696
            |.||||||||.||.||.|||||.||||||||..|.||.||||||||||||||.|||.||||..|||| .|||  
Sbjct  963  TTCAGCTCCTGAACGAGCATCTCTTGGGCCATCTGGAGCAAGCCAAAAGCCTCCCTGCAGGTGGCCAGCAGCAT  1036

Query  697  GAGGCAGCAGCTCCCGAGAAGGAGCAGGACACACCCCGGGGGGAACCCCCTGCAGTGCCCGAGAGCGAGA----  766
            |||   ||||||.|.||||||||||..||..|||||.||..|||.||.||..|||...||||||||.|||    
Sbjct 1037  GAG---GCAGCTTCTGAGAAGGAGCCTGATGCACCCAGGATGGAGCCTCCCACAGCAGCCGAGAGCAAGAGCAT  1107

Query  767  ----------ATGTTGCCACCAAAGAACAGAAGAAAAAGCCTCGAAGGGGGAGAAAACCCAAAGTGTCCAAAGC  830
                      |||  |.|||||||||.|..|||||||||||||||||.|||||.||||||||||..|||||.|.
Sbjct 1108  CCAGAGTGTCATG--GTCACCAAAGAGCCAAAGAAAAAGCCTCGAAGAGGGAGGAAACCCAAAGCATCCAAGGT  1179

Query  831  TGAGCAGCCTCTAGTCATCGTGGAAGACAAGGAACCCACAGAGCAAGTGGCAGAGATCATTACCGAGGTCCCTC  904
            ||||||||||||.|||||..|..||||||||||.||..|||||||.||||||||||||||.||.|||.||||.|
Sbjct 1180  TGAGCAGCCTCTGGTCATTATCAAAGACAAGGAGCCTTCAGAGCATGTGGCAGAGATCATAACTGAGATCCCCC  1253

Query  905  CGGATGAGCCTGTGAGTGCAACGCCAGATGAGCGGATCATGGAGCTGGTTCTGGGGAAGCTGGCCACCACCACC  978
            |.||||||||||||||||||||.||||||||.||||||||||||.|.||..||||||||||||||.||.||||.
Sbjct 1254  CAGATGAGCCTGTGAGTGCAACACCAGATGAACGGATCATGGAGTTAGTCTTGGGGAAGCTGGCCGCCCCCACA  1327

Query  979  ACTGACACCAGCTCGGTTCCAAAGTTCACCCATCATCAGAATAACACCATCACGCTCAAGAGGAGCTTAATTCT  1052
            |.|||..|||||||.||.|||||||||.|.|||||||..|..|.||||||..|.|||||||||.||||..||||
Sbjct 1328  AATGAAGCCAGCTCAGTGCCAAAGTTCCCACATCATCCAAGCAGCACCATTGCCCTCAAGAGGGGCTTGGTTCT  1401

Query 1053  CTCAAGCAGACACGGCATCCGGCGCAAGGTCATCAAACAGCTCGGGGAGCACAAGCGGGTTTACCAGTGCAATA  1126
            .||.||||||||.|||.|||||||.|||.||.||...|||||.||.|||||.||.||..|..|.|||||....|
Sbjct 1402  GTCCAGCAGACATGGCGTCCGGCGGAAGCTCGTCCGTCAGCTGGGTGAGCATAAACGCATCCATCAGTGTGGCA  1475

Query 1127  TCTGCAGCAAGATCTTCCAGAACAGCAGCAACCTGAGCAGGCACGTGCGCTCGCATGGT---------------  1185
            .||||||||||.||||||||||||||||||||||||||.||||||||||||||||.|||               
Sbjct 1476  CCTGCAGCAAGGTCTTCCAGAACAGCAGCAACCTGAGCCGGCACGTGCGCTCGCACGGTGAGTGCGCGCACGGG  1549

Query 1186  GACAAGCTGTTTAAGTGCGAAGAGTGTGCAAAATTGTTCAGCCGCAAAGAGAGCCTAAAGCAGCACGTTTCCTA  1259
            ||||||||||||||.||.||.||.|||.|.|||.||||||||||.||.||.||.|||||||||||.||||||||
Sbjct 1550  GACAAGCTGTTTAAATGTGAGGAATGTTCGAAACTGTTCAGCCGTAAGGAAAGTCTAAAGCAGCATGTTTCCTA  1623

Query 1260  CAAGCACAGCAGGAACGAGGTGGACGGCGAGTACAGGTACCGCTGCGGCACTTGTGAGAAGACCTTCCGCATCG  1333
            ||||||||||.||||.|||||||||||.||||||.|.||||||||.||||..||||.||||||.|||||.||.|
Sbjct 1624  CAAGCACAGCCGGAATGAGGTGGACGGTGAGTACCGCTACCGCTGTGGCAGCTGTGGGAAGACATTCCGAATGG  1697

Query 1334  AGAGCGCGCTGGAGTTCCACAACTGCAGGACAGATGACAAGACGTTCCAATGTGAGATGTGTTTCAGATTCTTC  1407
            ||||.||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698  AGAGTGCACTGGAGTTCCACAACTGTAGGACAGATGACAAGACGTTCCAATGTGAGATGTGTTTCAGATTCTTC  1771

Query 1408  TCCACCAACAGCAACCTCTCCAAGCACAAGAAGAAGCACGGCGACAAGAAGTTTGCCTGTGAGGTCTGCAGCAA  1481
            ||||||||||||||||||||.||||||||||||||.||.||.|||||||||||||||||||||||||||||.||
Sbjct 1772  TCCACCAACAGCAACCTCTCTAAGCACAAGAAGAAACATGGGGACAAGAAGTTTGCCTGTGAGGTCTGCAGTAA  1845

Query 1482  GATGTTCTACCGCAAGGACGTCATGCTGGACCACCAGCGCCGGCACCTGGAAGGAGTGCGGCGAGTGAAGCGAG  1555
            ||||||||||||||||||.||.|||||||||||||||.|.||.|||.||||.||.||||||||.||||||.|||
Sbjct 1846  GATGTTCTACCGCAAGGATGTTATGCTGGACCACCAGAGGCGACACTTGGATGGTGTGCGGCGGGTGAAGAGAG  1919

Query 1556  AGGACCTGGAGGCCGGTGGGGAGAACCTGGTCCGTTACAAGAAGGAGCCTTCCGGGTGCCCGGTGTGTGGCAAG  1629
            |.|||.||||||||.|.|||||.|.||||||.||||||||||||||.|||||.||.|||||.||||||||||||
Sbjct 1920  AAGACTTGGAGGCCAGCGGGGAAAGCCTGGTTCGTTACAAGAAGGAACCTTCTGGATGCCCAGTGTGTGGCAAG  1993

Query 1630  GTGTTCTCCTGCCGGAGCAATATGAACAAGCACCTGCTCACCCACGGCGACAAGAAGTACACCTGCGAGATCTG  1703
            |||||||||||.||||||||.|||||||||||||||||.||||||||.||||||||||||||||||||||||||
Sbjct 1994  GTGTTCTCCTGTCGGAGCAACATGAACAAGCACCTGCTGACCCACGGTGACAAGAAGTACACCTGCGAGATCTG  2067

Query 1704  CGGGCGCAAGTTCTTCCGCGTGGATGTGCTCAGGGACCACATCCATGTCCACTTCAAGGACATCGCGTTGATGG  1777
            .|||||||||||||||||.|||||.||.|||||||||||||||||||||||||||||||||||||||.|.||||
Sbjct 2068  TGGGCGCAAGTTCTTCCGAGTGGACGTACTCAGGGACCACATCCATGTCCACTTCAAGGACATCGCGCTAATGG  2141

Query 1778  ATGACCACCAGAGGGAAGAGTTTATCGGCAAGATCGGGATCTCCTCGGAAGAAAACGATGACAATTCTGACGAG  1851
            |||||||||||.||||.|||||.||.|||||.||.|||||||||||.||.||.||.||||||||.|||||.|||
Sbjct 2142  ATGACCACCAGCGGGAGGAGTTCATTGGCAAAATTGGGATCTCCTCAGAGGAGAATGATGACAACTCTGATGAG  2215

Query 1852  AGCGCAGACTCGGAGCCTCACAAGTACAGCTGCAAGCGGTGCCAGCTCACCTTCGGCCGGGGGAAGGAGTACCT  1925
            |||||||||||.|||||.||||||||||||||||||.|||||||||||||.||||||||.||||||||.|||||
Sbjct 2216  AGCGCAGACTCTGAGCCACACAAGTACAGCTGCAAGAGGTGCCAGCTCACTTTCGGCCGTGGGAAGGAATACCT  2289

Query 1926  GAAGCACATCATGGAGGTGCACAAGGAGAAGGGCTATGGCTGCAGCATCTGCAACCGGCGCTTTGCACTGAAGG  1999
            ||||||||||||||||||||||||||||||||||.|.|||||||||||||||.||||.|||||.|||||.||||
Sbjct 2290  GAAGCACATCATGGAGGTGCACAAGGAGAAGGGCCACGGCTGCAGCATCTGCCACCGACGCTTCGCACTCAAGG  2363

Query 2000  CCACCTACCACGCCCACATGGTCATCCACCGTGAAAACCTGCCGGACCCCAACGTGCAGAAGTACATCCACCCC  2073
            ||||||||||.||||||||||||||||||||.||.||||||||.|||||||||||||||||||||||.||||||
Sbjct 2364  CCACCTACCATGCCCACATGGTCATCCACCGGGAGAACCTGCCTGACCCCAACGTGCAGAAGTACATTCACCCC  2437

Query 2074  TGCGAGATCTGCGGGCGGATCTTCAACAGCATCGGGAACCTGGAGCGCCACAAGCTCATCCACACAGGTGTGAA  2147
            ||.||||||||.|||.||||.|||||||||||.||||||.|||||||||||||.||||||||||||||||||||
Sbjct 2438  TGTGAGATCTGTGGGAGGATATTCAACAGCATTGGGAACTTGGAGCGCCACAAACTCATCCACACAGGTGTGAA  2511

Query 2148  GAGCCACGCCTGCGAGCAGTGTGGGAAGTCCTTTGCCAGGAAGGACATGCTGAAGGAGCACATGCGTGTGCACG  2221
            .|||||||||||.|||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.|
Sbjct 2512  AAGCCACGCCTGTGAGCAGTGTGGGAAGTCCTTTGCCAGGAAGGACATGCTGAAAGAGCACATGCGTGTGCATG  2585

Query 2222  ACAACGTCCGCGAGTACCTGTGTGCCGAGTGTGGGAAAGGCATGAAGACCAAGCACGCGCTGCGCCACCACATG  2295
            |||||.||||.|||||||||||.|||||||||||||||||.||||||||||||||.||.|||||||||||.|||
Sbjct 2586  ACAACATCCGGGAGTACCTGTGCGCCGAGTGTGGGAAAGGTATGAAGACCAAGCATGCACTGCGCCACCATATG  2659

Query 2296  AAGCTGCACAAGGGCATCAAGGAGTACGAGTGCAAGGAGTGCCACCGCAGGTTCGCGCAGAAGGTCAACATGCT  2369
            |||||||||||.||||||||||||||.|||||||||||.||.|||||||.|||.||.|||||||||||||||||
Sbjct 2660  AAGCTGCACAAAGGCATCAAGGAGTATGAGTGCAAGGAATGTCACCGCAAGTTTGCACAGAAGGTCAACATGCT  2733

Query 2370  CAAGCACTGCAAGCGGCACAC-----------------------------------------------------  2390
            ||||||||.|||.||||||||                                                     
Sbjct 2734  CAAGCACTACAAACGGCACACAGGTGTCCCAACTCTCCAAAACCAAATAGCCCTAGAGCGAGTTCCTCAGGGTT  2807

Query 2391  --------------------------------------------------------------------------  2390
                                                                                      
Sbjct 2808  TTCTCTCTCTGTTCCTAGCCCCAAGCTTGCTATTATCCTGGCTGATGTGGGATGAGGCTGTGCATCTCAGAGCT  2881

Query 2391  --------------------------------------------------------------------------  2390
                                                                                      
Sbjct 2882  CCCTTACTTCATGAGCACTGTAACCCTGTGTATACAAGTAAAACCCCACTGCAAATGTCTGCGCCAGAGATCTT  2955

Query 2391  --------------------------------------------GGGG--------------------------  2394
                                                        ||||                          
Sbjct 2956  TTATGAGTTTGCCAATGGACCCCTGGAAATCGTAGCCACTTACTGGGGCTCTCCATTTCTGCACAGGATCAAAA  3029

Query 2395  -----------------------ATTAAAGATTTCATGTGTGAATTGTGTGGGAAGACATTCAGCGAGAGGAAC  2445
                                   ||||||||.||||||||||||||||||||||||||||||||.|||||||||
Sbjct 3030  CCCTATGGCATCATCATCAGTGAATTAAAGACTTCATGTGTGAATTGTGTGGGAAGACATTCAGTGAGAGGAAC  3103

Query 2446  ACCATGGAGACCCACAAGCTCATCCACACAGTGGGCAAGCAGTGGACGTGCTCCGTGTGCGACAAGAAGTACGT  2519
            ||.||||||||.||||||||||||||||||||.||||||||||||||.||.||||||||.||||||||||||||
Sbjct 3104  ACAATGGAGACACACAAGCTCATCCACACAGTAGGCAAGCAGTGGACTTGTTCCGTGTGTGACAAGAAGTACGT  3177

Query 2520  GACCGAGTACATGCTGCAGAAGCACGTTCAGCTCACACACGACAAGGTGGAGGCGCAGAGCTGCCAGCTGTGCG  2593
            .||.|||||||||||.|||||.|||||.||||||||.||.|||||||||||.||.|||||.|||||.||.||.|
Sbjct 3178  CACAGAGTACATGCTTCAGAAACACGTCCAGCTCACTCATGACAAGGTGGAAGCACAGAGTTGCCAACTATGTG  3251

Query 2594  GGACCAAGGTGTCCACCAGGGCCTCCATGAGCCGACACATGCGGCGCAAGCACCCCGAGGTGCTCGCGGTGAGG  2667
            |.|||||.|||||.|||.||||||||||||||.||||.|||||.|||||||||||||||||.|||||.||..||
Sbjct 3252  GCACCAAAGTGTCAACCCGGGCCTCCATGAGCAGACATATGCGACGCAAGCACCCCGAGGTCCTCGCTGTTCGG  3325

Query 2668  ATCGATGACCTGGACCACCTCCCGGAGACCACCACCATCGACGCCTCCTCCATTGGCATCGTCCAGCCTGAGCT  2741
            ||.||.||.||||||||||||||.|||||||||||||||||.||.||.|||||.|||||.||||||||||.|||
Sbjct 3326  ATTGACGATCTGGACCACCTCCCCGAGACCACCACCATCGATGCATCTTCCATCGGCATTGTCCAGCCTGCGCT  3399

Query 2742  GACTCTGGAGCAGGAGGATTTGGCCGAAGGGAAGCACGGGAAAGCTGCCAAGCGAAGTCACAAGAGAAAGCAGA  2815
            |...|||||||||||.||..||||.|||||.|||||.||.||.|||||||||||.||.||||||||||||||||
Sbjct 3400  GGGCCTGGAGCAGGAAGAACTGGCAGAAGGTAAGCATGGAAAGGCTGCCAAGCGCAGCCACAAGAGAAAGCAGA  3473

Query 2816  AGCCAGAAGAGGAGGCGGGTGCTCCGGTGCCCGAGGACGCCACCTTCAGCGAATACTCAGAGAAAGAGACGGAG  2889
            |||||||.||.|||||.||.|||||.|||||.|||||..||||||||||.||||||.|.||.||.|||.|.|||
Sbjct 3474  AGCCAGAGGAAGAGGCAGGGGCTCCAGTGCCTGAGGATACCACCTTCAGTGAATACCCCGAAAAGGAGCCAGAG  3547

Query 2890  TTCACAGGCAGTGTAGGCGACGAGACCAATTCCGCAGTACAGAGCATTCAGCAGGTAGTGGTGACCCTGGGTGA  2963
            ||||||||||||||.||.||||||||.|||||.||.||||||||.||.||.|||||.|||||||||||.||.||
Sbjct 3548  TTCACAGGCAGTGTGGGTGACGAGACAAATTCTGCTGTACAGAGTATCCAACAGGTGGTGGTGACCCTAGGGGA  3621

Query 2964  CCCAAATGTGACCACACCATCGAGCTCAGTCGGCTTGACCAACATCACCGTGACCCCCATCACCACTGCGGCCG  3037
            |||.||||||||..|.|||||.||||||||.||..|.||||||||||||||||||||||||||||||||.||.|
Sbjct 3622  CCCCAATGTGACTGCTCCATCAAGCTCAGTTGGTCTAACCAACATCACCGTGACCCCCATCACCACTGCAGCTG  3695

Query 3038  CGACTCAGTTTACCAATCTCCAGCCGGTGGCCGTGGGGCACCTTACCACCCCTGAACGCCAGTTACAGCTGGAC  3111
            ..|||||||||||||||.|.|||||.|||||.||.||.                                    
Sbjct 3696  GAACTCAGTTTACCAATTTACAGCCAGTGGCTGTTGGA------------------------------------  3733

Query 3112  AACTCAATCCTGACCGTGACCTTTGATACCGTCAGCGGCTCTGCCATGTTGCACAACCGCCAAAATGACGTCCA  3185
                                                                                      
Sbjct 3734  --------------------------------------------------------------------------  3733

Query 3186  GATCCACCCCCAGCCGGAAGCCTCGAACCCACAGTCTGTGGCCCATTTCATCAACCTGACGACCCTGGTCAACT  3259
                                                                                      
Sbjct 3734  --------------------------------------------------------------------------  3733

Query 3260  CCATCACGCCCCTGGGGAGCCAGCTTAGTGACCAGCACCCGCTCACGTGGCGGGCAGTGCCCCAGACTGACGTC  3333
                                                                                      
Sbjct 3734  --------------------------------------------------------------------------  3733

Query 3334  TTGCCACCCCCGCAGCCGCAGGCACCCCCACAGCAGGCGGCCCAGCCCCAGGTGCAGGCGGAGCAGCAGCAGCA  3407
                                                                                      
Sbjct 3734  --------------------------------------------------------------------------  3733

Query 3408  GCAGATGTACAGCTAC  3423
                            
Sbjct 3734  ----------------  3733