Construct: ORF ccsbBroadEn_12439
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006885.1_s300c1, BRDN0000390488
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PRDM15 (63977)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 63977 | PRDM15 | PR/SET domain 15 | XM_017028425.1 | 99.8% | 99.8% | (many diffs) |
| 2 | human | 63977 | PRDM15 | PR/SET domain 15 | XM_017028426.1 | 99.8% | 99.8% | (many diffs) |
| 3 | human | 63977 | PRDM15 | PR/SET domain 15 | XM_011529675.1 | 98.1% | 98.1% | (many diffs) |
| 4 | human | 63977 | PRDM15 | PR/SET domain 15 | XM_011529676.2 | 98.1% | 98.1% | (many diffs) |
| 5 | human | 63977 | PRDM15 | PR/SET domain 15 | XM_011529677.2 | 98.1% | 98.1% | (many diffs) |
| 6 | human | 63977 | PRDM15 | PR/SET domain 15 | XM_011529678.2 | 98.1% | 98.1% | (many diffs) |
| 7 | human | 63977 | PRDM15 | PR/SET domain 15 | XM_011529679.2 | 98.1% | 98.1% | (many diffs) |
| 8 | human | 63977 | PRDM15 | PR/SET domain 15 | XM_011529681.3 | 97.7% | 97.7% | (many diffs) |
| 9 | human | 63977 | PRDM15 | PR/SET domain 15 | NM_001040424.2 | 96.7% | 96.6% | (many diffs) |
| 10 | human | 63977 | PRDM15 | PR/SET domain 15 | NM_001282934.1 | 95.1% | 95% | (many diffs) |
| 11 | human | 63977 | PRDM15 | PR/SET domain 15 | XM_006724040.2 | 92.9% | 92.9% | (many diffs) |
| 12 | human | 63977 | PRDM15 | PR/SET domain 15 | XM_011529674.1 | 92.2% | 92.2% | (many diffs) |
| 13 | human | 63977 | PRDM15 | PR/SET domain 15 | XM_006724039.2 | 91.4% | 91.4% | (many diffs) |
| 14 | human | 63977 | PRDM15 | PR/SET domain 15 | XM_011529683.1 | 79% | 79% | (many diffs) |
| 15 | human | 63977 | PRDM15 | PR/SET domain 15 | XR_937542.1 | 76.5% | (many diffs) | |
| 16 | human | 63977 | PRDM15 | PR/SET domain 15 | NM_022115.4 | 75.6% | 75.5% | (many diffs) |
| 17 | human | 63977 | PRDM15 | PR/SET domain 15 | NR_135464.2 | 68.4% | (many diffs) | |
| 18 | human | 63977 | PRDM15 | PR/SET domain 15 | NR_104260.1 | 68.2% | (many diffs) | |
| 19 | human | 63977 | PRDM15 | PR/SET domain 15 | XR_001754887.1 | 67.2% | (many diffs) | |
| 20 | human | 63977 | PRDM15 | PR/SET domain 15 | XR_001754886.1 | 52.3% | (many diffs) | |
| 21 | human | 63977 | PRDM15 | PR/SET domain 15 | NR_104257.2 | 51.7% | (many diffs) | |
| 22 | human | 63977 | PRDM15 | PR/SET domain 15 | NR_104258.2 | 50.6% | (many diffs) | |
| 23 | mouse | 114604 | Prdm15 | PR domain containing 15 | XM_006522870.3 | 84.9% | 91.1% | (many diffs) |
| 24 | mouse | 114604 | Prdm15 | PR domain containing 15 | XM_006522869.3 | 84.5% | 90.7% | (many diffs) |
| 25 | mouse | 114604 | Prdm15 | PR domain containing 15 | NM_144789.2 | 82.7% | 88.7% | (many diffs) |
| 26 | mouse | 114604 | Prdm15 | PR domain containing 15 | XM_006522864.3 | 82.3% | 88.3% | (many diffs) |
| 27 | mouse | 114604 | Prdm15 | PR domain containing 15 | XM_006522863.3 | 82% | 88% | (many diffs) |
| 28 | mouse | 114604 | Prdm15 | PR domain containing 15 | XM_006522865.3 | 80.3% | 86.3% | (many diffs) |
| 29 | mouse | 114604 | Prdm15 | PR domain containing 15 | XM_006522866.3 | 79.9% | 85.8% | (many diffs) |
| 30 | mouse | 114604 | Prdm15 | PR domain containing 15 | XM_006522868.3 | 75.9% | 80.9% | (many diffs) |
| 31 | mouse | 114604 | Prdm15 | PR domain containing 15 | XM_011246090.2 | 75.9% | 80.9% | (many diffs) |
| 32 | mouse | 114604 | Prdm15 | PR domain containing 15 | XR_384928.3 | 64.5% | (many diffs) | |
| 33 | mouse | 114604 | Prdm15 | PR domain containing 15 | XM_006522871.3 | 51.9% | 56.8% | (many diffs) |
| 34 | mouse | 114604 | Prdm15 | PR domain containing 15 | XM_006522872.2 | 49.4% | 54.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3489
- ORF length:
- 3423
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TGAAGATGGG AGCGAAGAGA TCATGTTCAT CTGGTGTGAA GACTGCAGCC 121 AGTACCACGA CTCCGAATGT CCCGAGCTGG GCCCAGTGGT CATGGTCAAA GACTCCTTTG 181 TGTTAAGCAG GGCAAGGTCA TCCCTTCCTC CCAACTTGGA GATCAGACGA CTGGAAGATG 241 GAGCCGAGGG GGTGTTCGCC ATCACTCAGC TCGTCAAGCG GACACAGTTC GGTCCCTTTG 301 AGTCCAGGAG GGTCGCCAAA TGGGAAAAGG AGTCTGCATT TCCCCTGAAG GTGTTCCAGA 361 AGGACGGGCA CCCCGTGTGC TTCGACACCT CCAACGAGGA TGACTGCAAC TGGATGATGC 421 TGGTGCGGCC AGCGGCGGAG GCCGAGCACC AGAACCTGAC GGCCTACCAG CACGGCAGCG 481 ACGTGTACTT CACCACCTCC AGAGACATCC CCCCGGGTAC CGAGCTGCGC GTGTGGTATG 541 CGGCCTTCTA TGCCAAGAAG ATGGACAAGC CCATGCTGAA GCAGGCCGGC TCTGGCGTCC 601 ACGCTGCAGG CACCCCAGAA AACAGCGCCC CCGTGGAGTC GGAACCCAGC CAGTGGGCGT 661 GTAAAGTGTG TTCTGCCACC TTCCTGGAGC TGCAGCTCCT CAATGAACAT CTGTTGGGCC 721 ACTTAGAACA AGCCAAAAGC CTTCCTCCAG GCAGCCAAAG CGAGGCAGCA GCTCCCGAGA 781 AGGAGCAGGA CACACCCCGG GGGGAACCCC CTGCAGTGCC CGAGAGCGAG AATGTTGCCA 841 CCAAAGAACA GAAGAAAAAG CCTCGAAGGG GGAGAAAACC CAAAGTGTCC AAAGCTGAGC 901 AGCCTCTAGT CATCGTGGAA GACAAGGAAC CCACAGAGCA AGTGGCAGAG ATCATTACCG 961 AGGTCCCTCC GGATGAGCCT GTGAGTGCAA CGCCAGATGA GCGGATCATG GAGCTGGTTC 1021 TGGGGAAGCT GGCCACCACC ACCACTGACA CCAGCTCGGT TCCAAAGTTC ACCCATCATC 1081 AGAATAACAC CATCACGCTC AAGAGGAGCT TAATTCTCTC AAGCAGACAC GGCATCCGGC 1141 GCAAGGTCAT CAAACAGCTC GGGGAGCACA AGCGGGTTTA CCAGTGCAAT ATCTGCAGCA 1201 AGATCTTCCA GAACAGCAGC AACCTGAGCA GGCACGTGCG CTCGCATGGT GACAAGCTGT 1261 TTAAGTGCGA AGAGTGTGCA AAATTGTTCA GCCGCAAAGA GAGCCTAAAG CAGCACGTTT 1321 CCTACAAGCA CAGCAGGAAC GAGGTGGACG GCGAGTACAG GTACCGCTGC GGCACTTGTG 1381 AGAAGACCTT CCGCATCGAG AGCGCGCTGG AGTTCCACAA CTGCAGGACA GATGACAAGA 1441 CGTTCCAATG TGAGATGTGT TTCAGATTCT TCTCCACCAA CAGCAACCTC TCCAAGCACA 1501 AGAAGAAGCA CGGCGACAAG AAGTTTGCCT GTGAGGTCTG CAGCAAGATG TTCTACCGCA 1561 AGGACGTCAT GCTGGACCAC CAGCGCCGGC ACCTGGAAGG AGTGCGGCGA GTGAAGCGAG 1621 AGGACCTGGA GGCCGGTGGG GAGAACCTGG TCCGTTACAA GAAGGAGCCT TCCGGGTGCC 1681 CGGTGTGTGG CAAGGTGTTC TCCTGCCGGA GCAATATGAA CAAGCACCTG CTCACCCACG 1741 GCGACAAGAA GTACACCTGC GAGATCTGCG GGCGCAAGTT CTTCCGCGTG GATGTGCTCA 1801 GGGACCACAT CCATGTCCAC TTCAAGGACA TCGCGTTGAT GGATGACCAC CAGAGGGAAG 1861 AGTTTATCGG CAAGATCGGG ATCTCCTCGG AAGAAAACGA TGACAATTCT GACGAGAGCG 1921 CAGACTCGGA GCCTCACAAG TACAGCTGCA AGCGGTGCCA GCTCACCTTC GGCCGGGGGA 1981 AGGAGTACCT GAAGCACATC ATGGAGGTGC ACAAGGAGAA GGGCTATGGC TGCAGCATCT 2041 GCAACCGGCG CTTTGCACTG AAGGCCACCT ACCACGCCCA CATGGTCATC CACCGTGAAA 2101 ACCTGCCGGA CCCCAACGTG CAGAAGTACA TCCACCCCTG CGAGATCTGC GGGCGGATCT 2161 TCAACAGCAT CGGGAACCTG GAGCGCCACA AGCTCATCCA CACAGGTGTG AAGAGCCACG 2221 CCTGCGAGCA GTGTGGGAAG TCCTTTGCCA GGAAGGACAT GCTGAAGGAG CACATGCGTG 2281 TGCACGACAA CGTCCGCGAG TACCTGTGTG CCGAGTGTGG GAAAGGCATG AAGACCAAGC 2341 ACGCGCTGCG CCACCACATG AAGCTGCACA AGGGCATCAA GGAGTACGAG TGCAAGGAGT 2401 GCCACCGCAG GTTCGCGCAG AAGGTCAACA TGCTCAAGCA CTGCAAGCGG CACACGGGGA 2461 TTAAAGATTT CATGTGTGAA TTGTGTGGGA AGACATTCAG CGAGAGGAAC ACCATGGAGA 2521 CCCACAAGCT CATCCACACA GTGGGCAAGC AGTGGACGTG CTCCGTGTGC GACAAGAAGT 2581 ACGTGACCGA GTACATGCTG CAGAAGCACG TTCAGCTCAC ACACGACAAG GTGGAGGCGC 2641 AGAGCTGCCA GCTGTGCGGG ACCAAGGTGT CCACCAGGGC CTCCATGAGC CGACACATGC 2701 GGCGCAAGCA CCCCGAGGTG CTCGCGGTGA GGATCGATGA CCTGGACCAC CTCCCGGAGA 2761 CCACCACCAT CGACGCCTCC TCCATTGGCA TCGTCCAGCC TGAGCTGACT CTGGAGCAGG 2821 AGGATTTGGC CGAAGGGAAG CACGGGAAAG CTGCCAAGCG AAGTCACAAG AGAAAGCAGA 2881 AGCCAGAAGA GGAGGCGGGT GCTCCGGTGC CCGAGGACGC CACCTTCAGC GAATACTCAG 2941 AGAAAGAGAC GGAGTTCACA GGCAGTGTAG GCGACGAGAC CAATTCCGCA GTACAGAGCA 3001 TTCAGCAGGT AGTGGTGACC CTGGGTGACC CAAATGTGAC CACACCATCG AGCTCAGTCG 3061 GCTTGACCAA CATCACCGTG ACCCCCATCA CCACTGCGGC CGCGACTCAG TTTACCAATC 3121 TCCAGCCGGT GGCCGTGGGG CACCTTACCA CCCCTGAACG CCAGTTACAG CTGGACAACT 3181 CAATCCTGAC CGTGACCTTT GATACCGTCA GCGGCTCTGC CATGTTGCAC AACCGCCAAA 3241 ATGACGTCCA GATCCACCCC CAGCCGGAAG CCTCGAACCC ACAGTCTGTG GCCCATTTCA 3301 TCAACCTGAC GACCCTGGTC AACTCCATCA CGCCCCTGGG GAGCCAGCTT AGTGACCAGC 3361 ACCCGCTCAC GTGGCGGGCA GTGCCCCAGA CTGACGTCTT GCCACCCCCG CAGCCGCAGG 3421 CACCCCCACA GCAGGCGGCC CAGCCCCAGG TGCAGGCGGA GCAGCAGCAG CAGCAGATGT 3481 ACAGCTACTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 3541 tttgttgcaa cgaac