Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12473
- Subject:
- XR_001747189.2
- Aligned Length:
- 2962
- Identities:
- 1227
- Gaps:
- 1735
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTAACAGAGACTGCGCAGGGGGCCTGAGCGGGAGAGTCCTGGCGAGGGCGCTGGCCGAGAGGTGCTCGGCTTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TAGCAGGTCCCGCACTCCAGCCTCTCGCTGCCAGGGTTTGCTCTCTGCTTGTCCTGGGCTGAGGTGTCCATGAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGAGTCATCCAAGGAGGAAAAAATCTGTTCCGGGTGAGCCCAGGCCGCCCCGGATATGCGATGGCTGAGGAGCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GACACCAGGGACCACACTGAGGTTGGGTTTCAGACCAAGACACTGGATTCTCCTAGTTAAGATAAAGAGCTTTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGTGCCTGACAGTGAAAATGGTGTAATCTGCGTTAACAGTTCACAGCTTGAAGGCATGACAATTAAAGAACACA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CATGGACTTGTGGCACATGGAAATGTGCGCACAGAAAAAGGAAATCTATAATTCTTTTAAAGTAGGAAGGCATT 444
Query 1 -------------ATGGGTACATTCTGTTCGGTTATCAAGTTTGAAAATCTACAAGAATTAAAGAGACTGTGTC 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTTCCTTGCCAAAATGGGTACATTCTGTTCGGTTATCAAGTTTGAAAATCTACAAGAATTAAAGAGACTGTGTC 518
Query 62 ACTGGGGTCCCATCATAGCCCTTGGTGTTATAGCAATATGTTCTACCATGGCCATGATTGACTCTGTGTTGTGG 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACTGGGGTCCCATCATAGCCCTTGGTGTTATAGCAATATGTTCTACCATGGCCATGATTGACTCTGTGTTGTGG 592
Query 136 TATTGGCCCTTACATACAACTGGAGGAAGTGTGAATTTCATCATGTTGATAAATTGGACTGTCATGATTCTTTA 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TATTGGCCCTTACATACAACTGGAGGAAGTGTGAATTTCATCATGTTGATAAATTGGACTGTCATGATTCTTTA 666
Query 210 TAATTACTTCAATGCCATGTTTGTCGGTCCGGGCTTTGTCCCTCTGGGGTGGAAACC------------GGATA 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 667 TAATTACTTCAATGCCATGTTTGTCGGTCCGGGCTTTGTCCCTCTGGGGTGGAAACCGGAAATTTCTCAGGATA 740
Query 272 CCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCACCACGTTCACATCACTGCAGAAAGTGTAAC 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCACCACGTTCACATCACTGCAGAAAGTGTAAC 814
Query 346 AGATGTGTGATGAAGATGGACCATCACTGTCCTTGGATCAACAACTGTTGTGGTTACCAAAATCATGCTTCGTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AGATGTGTGATGAAGATGGACCATCACTGTCCTTGGATCAACAACTGTTGTGGTTACCAAAATCATGCTTCGTT 888
Query 420 CACACTGTTTCTCCTTTTAGCACCACTGGGTTGTATCCATGCTGCTTTCATTTTTGTGATGACTATGTACACAC 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CACACTGTTTCTCCTTTTAGCACCACTGGGTTGTATCCATGCTGCTTTCATTTTTGTGATGACTATGTACACAC 962
Query 494 AGCTTTATCATCGGCTCTCCTTTGGGTGGAACACAGTGAAGATCGACATGAGTGCAGCCCGGAGAGATCCTCTT 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGCTTTATCATCGGCTCTCCTTTGGGTGGAACACAGTGAAGATCGACATGAGTGCAGCCCGGAGAGATCCTCTT 1036
Query 568 CCAATTGTTCCATTTGGATTAGCTGCATTTGCTACCACCTTGTTTGCCTTGGGATTAGCTTTAGGAACAACCAT 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCAATTGTTCCATTTGGATTAGCTGCATTTGCTACCACCTTGTTTGCCTTGGGATTAGCTTTAGGAACAACCAT 1110
Query 642 AGCTGTTGGGATGTTGTTTTTTATCCAGATGAAAATAATTCTCAGAAACAAAACTTCTATTGAGTCATGGATTG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AGCTGTTGGGATGTTGTTTTTTATCCAGATGAAAATAATTCTCAGAAACAAAACTTCTATTGAGTCATGGATTG 1184
Query 716 AAGAGAAGGCTAAAGATCGAATTCAGTATTATCAACTAGATGAAGTCTTTGTTTTTCCATATGATATGGGAAGT 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AAGAGAAGGCTAAAGATCGAATTCAGTATTATCAACTAGATGAAGTCTTTGTTTTTCCATATGATATGGGAAGT 1258
Query 790 AGATGGAGGAACTTTAAACAGGTATTTACGTGGTCAGGGGTCCCTGAAGGAGATGGACTTGAGTGGCCAGTAAG 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGATGGAGGAACTTTAAACAGGTATTTACGTGGTCAGGGGTCCCTGAAGGAGATGGACTTGAGTGGCCAGTAAG 1332
Query 864 AGAAGGCTGTCACCAATACAGCTTA------------------------------------------------- 888
|||||||||||||||||||||||||
Sbjct 1333 AGAAGGCTGTCACCAATACAGCTTAACAGTGAGTATTTTTGTTCAAATAGCCCTTCCTTTTTGCCTCGCCTTCT 1406
Query 889 -------------------------------------------------------------------------- 888
Sbjct 1407 TTCCCTTAACTCCCCCTCAACTCAAGTGACATTTTGTAGTAAAATAAGTAATATGAATGTTTTCACTATGTCAA 1480
Query 889 -------------------------------------------------------------------------- 888
Sbjct 1481 AATGAATCTAATAATTCTAAAGCACTCCTTGTATCATGTATCTCCCTTTATTTCAATATCTCCTTAATTCTCTA 1554
Query 889 -------------------------------------------------------------------------- 888
Sbjct 1555 TACCTGTGAGATAAAGTCCTGATCCCTTAACATAGTTTTATGAAATCTGGCCAAAAATTACCTTCCAACTTACA 1628
Query 889 -------------------------------------------------------------------------- 888
Sbjct 1629 GTAGCATATGAATTCCTTATACATTCCTGTCACCCAACTTTGCCCACAATTTTTTCCATCTTATATGACCTCCA 1702
Query 889 -------------------------------------------------------------------------- 888
Sbjct 1703 CTCTATCTAAAATTATTAAGACTCGTTCCAGTCTTACCTCTTCCATAAAGTCTAACCTACCCCCATAGACTCAT 1776
Query 889 -------------------------------------------------------------------------- 888
Sbjct 1777 CTGAATGTGACATTTAATCACATACTACTCTATGGTAGCTCATGAAGTCTCATATTTTTATTTAATTCTGCTAT 1850
Query 889 -------------------------------------------------------------------------- 888
Sbjct 1851 CTTATATCTGTAACTTCATAAGATTCTAGGACAGAGATCATGAGTTATCTTTATTTCTCCTATTATATCTAATA 1924
Query 889 -------------------------------------------------------------------------- 888
Sbjct 1925 TAGTGCTATTTAATAGTAGCTATGTCAAATTAAGTTATGATGACTTTTATTCATTCAACTTCATTATTAAATGT 1998
Query 889 -------------------------------------------------------------------------- 888
Sbjct 1999 TCTTCATTATTCATTTGTAGTTTGTCTGCCATGTCTCTACAGAATCAGTGAATCTCAGTGTTTTCACCTGAGAA 2072
Query 889 -----------------------------------------ACAATAGAACAGTTGAAACAAAAAGCAGATAAG 921
|||||||||||||||||||||||||||||||||
Sbjct 2073 GCTTCATGAGGGCGGAGAATATACTCCCTGATCCCTGGGCCACAATAGAACAGTTGAAACAAAAAGCAGATAAG 2146
Query 922 AGAGTCAGAAGTGTTCGCTATAAAGTAATAGAAGATTATAGTGGTGCCTGCTGCCCTCTGAATAAAGGAATCAA 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 AGAGTCAGAAGTGTTCGCTATAAAGTAATAGAAGATTATAGTGGTGCCTGCTGCCCTCTGAATAAAGGAATCAA 2220
Query 996 AACCTTCTTCACAAGTCCCTGCACCGAAGAGCCTCGAATACAGCTGCAAAAAGGGGAATTCATTTTAGCCACAA 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 AACCTTCTTCACAAGTCCCTGCACCGAAGAGCCTCGAATACAGCTGCAAAAAGGGGAATTCATTTTAGCCACAA 2294
Query 1070 GAGGTTTACGATACTGGTTATATGGAGACAAAATTCTTGATGATTCCTTTATAGAAGGTGTTTCAAGAATAAGG 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 GAGGTTTACGATACTGGTTATATGGAGACAAAATTCTTGATGATTCCTTTATAGAAGGTGTTTCAAGAATAAGG 2368
Query 1144 GGTTGGTTCCCTAGAAAATGTGTGGAAAAGTGTCCCTGTGATGCTGAAACAGATCAAGCCCCAGAGGGGGAGAA 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 GGTTGGTTCCCTAGAAAATGTGTGGAAAAGTGTCCCTGTGATGCTGAAACAGATCAAGCCCCAGAGGGGGAGAA 2442
Query 1218 GAAAAATAGA---------------------------------------------------------------- 1227
||||||||||
Sbjct 2443 GAAAAATAGATAGCTGCTGTTAAAACAAAATTATCCTTTAAGTCTGCTTAATTACTTGAAAATTGTACATATTA 2516
Query 1228 -------------------------------------------------------------------------- 1227
Sbjct 2517 CTAAAGAATTATGCAATGAGCCTACTCTGGTTAAGATGTTCTTTTCCTCAAAGGTGCCCTAGTGCCATGATTTA 2590
Query 1228 -------------------------------------------------------------------------- 1227
Sbjct 2591 AATATTTTTATTACCATTTTGAAATGGAGAAGCCATTCTGCATATGCCTTTGAATTCCTGCCCCTCTTTACCAC 2664
Query 1228 -------------------------------------------------------------------------- 1227
Sbjct 2665 CTCTTCCTCCCCCTCAAAGGAAAAACATTTCATCCAAGTAAGTTAACGGCATTTTCTGTAGGATTTTCTTATGC 2738
Query 1228 -------------------------------------------------------------------------- 1227
Sbjct 2739 ACTGCACACTCTGGACCTCACCTGCAGATACAGTTCCCCCCTTGCCAGGAGCATCTGCATGTGGTACTTCTCTT 2812
Query 1228 -------------------------------------------------------------------------- 1227
Sbjct 2813 TTCCCTCAGTTGATATTTCTTATATGATATTCTAGATACTATAGAACTCAATTTGTCAGATTCAGTATAACCTC 2886
Query 1228 -------------------------------------------------------------------------- 1227
Sbjct 2887 AGATTTTGTTACCTGTCTTTTAAAAATGCAGATTTTGTCAAATCAAATAAAGATCAATGGATGTTGGGTATAAT 2960
Query 1228 -- 1227
Sbjct 2961 CA 2962
