Construct: ORF ccsbBroadEn_12473
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000382.1_s300c1, BRDN0000389518
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZDHHC6 (64429)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | NM_001303134.1 | 100% | 100% | |
| 2 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | XM_017016562.2 | 100% | 100% | |
| 3 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | XM_017016563.2 | 100% | 100% | |
| 4 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | NM_001351082.2 | 99% | 99% | 267_278del |
| 5 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | NM_001351083.1 | 99% | 99% | 267_278del |
| 6 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | NM_001351084.1 | 99% | 99% | 267_278del |
| 7 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | NM_022494.3 | 99% | 99% | 267_278del |
| 8 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | XM_017016566.2 | 91.7% | 92.1% | 1128_1133delGGTCCT;1137_1138ins96 |
| 9 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | NM_001363544.2 | 90.8% | 91.2% | 267_278del;1140_1145delGGTCCT;1149_1150ins96 |
| 10 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | XM_011540091.2 | 90.8% | 91.2% | 267_278del;1140_1145delGGTCCT;1149_1150ins96 |
| 11 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | XM_017016564.2 | 90.8% | 91.2% | 267_278del;1140_1145delGGTCCT;1149_1150ins96 |
| 12 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | XM_017016567.2 | 86.7% | 86.7% | 506_507ins162 |
| 13 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | XM_006717949.4 | 85.9% | 85.9% | 267_278del;518_519ins162 |
| 14 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | NM_001351086.1 | 74.5% | 64.8% | 0_1ins220;125_126ins92 |
| 15 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | NM_001351085.1 | 73.8% | 65.3% | 0_1ins220;47_58del;137_138ins92 |
| 16 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | XM_011540093.2 | 73.8% | 65.3% | 0_1ins220;47_58del;137_138ins92 |
| 17 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | XM_017016568.2 | 73.8% | 65.3% | 0_1ins220;47_58del;137_138ins92 |
| 18 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | XM_011540095.3 | 60.7% | 52.2% | (many diffs) |
| 19 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | XR_945802.3 | 53.2% | (many diffs) | |
| 20 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | NR_147045.1 | 53.1% | (many diffs) | |
| 21 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | XR_001747191.2 | 48.2% | (many diffs) | |
| 22 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | XR_001747190.2 | 47.8% | (many diffs) | |
| 23 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | XM_017016569.1 | 45.4% | 45.4% | 0_1ins669 |
| 24 | human | 64429 | ZDHHC6 | zinc finger DHHC-type conta... | XR_001747189.2 | 41.4% | (many diffs) | |
| 25 | mouse | 66980 | Zdhhc6 | zinc finger, DHHC domain co... | NM_001033573.1 | 88.2% | 92% | (many diffs) |
| 26 | mouse | 66980 | Zdhhc6 | zinc finger, DHHC domain co... | NM_025883.3 | 88.2% | 92% | (many diffs) |
| 27 | mouse | 66980 | Zdhhc6 | zinc finger, DHHC domain co... | XM_006527268.2 | 88.2% | 92% | (many diffs) |
| 28 | mouse | 66980 | Zdhhc6 | zinc finger, DHHC domain co... | XM_011247316.1 | 88.2% | 92% | (many diffs) |
| 29 | mouse | 66980 | Zdhhc6 | zinc finger, DHHC domain co... | XM_006527269.1 | 79.4% | 82% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1293
- ORF length:
- 1227
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG TACATTCTGT TCGGTTATCA AGTTTGAAAA TCTACAAGAA TTAAAGAGAC 121 TGTGTCACTG GGGTCCCATC ATAGCCCTTG GTGTTATAGC AATATGTTCT ACCATGGCCA 181 TGATTGACTC TGTGTTGTGG TATTGGCCCT TACATACAAC TGGAGGAAGT GTGAATTTCA 241 TCATGTTGAT AAATTGGACT GTCATGATTC TTTATAATTA CTTCAATGCC ATGTTTGTCG 301 GTCCGGGCTT TGTCCCTCTG GGGTGGAAAC CGGATACCAT GTATCTCCAG TATTGTAAAG 361 TCTGCCAAGC ATACAAGGCA CCACGTTCAC ATCACTGCAG AAAGTGTAAC AGATGTGTGA 421 TGAAGATGGA CCATCACTGT CCTTGGATCA ACAACTGTTG TGGTTACCAA AATCATGCTT 481 CGTTCACACT GTTTCTCCTT TTAGCACCAC TGGGTTGTAT CCATGCTGCT TTCATTTTTG 541 TGATGACTAT GTACACACAG CTTTATCATC GGCTCTCCTT TGGGTGGAAC ACAGTGAAGA 601 TCGACATGAG TGCAGCCCGG AGAGATCCTC TTCCAATTGT TCCATTTGGA TTAGCTGCAT 661 TTGCTACCAC CTTGTTTGCC TTGGGATTAG CTTTAGGAAC AACCATAGCT GTTGGGATGT 721 TGTTTTTTAT CCAGATGAAA ATAATTCTCA GAAACAAAAC TTCTATTGAG TCATGGATTG 781 AAGAGAAGGC TAAAGATCGA ATTCAGTATT ATCAACTAGA TGAAGTCTTT GTTTTTCCAT 841 ATGATATGGG AAGTAGATGG AGGAACTTTA AACAGGTATT TACGTGGTCA GGGGTCCCTG 901 AAGGAGATGG ACTTGAGTGG CCAGTAAGAG AAGGCTGTCA CCAATACAGC TTAACAATAG 961 AACAGTTGAA ACAAAAAGCA GATAAGAGAG TCAGAAGTGT TCGCTATAAA GTAATAGAAG 1021 ATTATAGTGG TGCCTGCTGC CCTCTGAATA AAGGAATCAA AACCTTCTTC ACAAGTCCCT 1081 GCACCGAAGA GCCTCGAATA CAGCTGCAAA AAGGGGAATT CATTTTAGCC ACAAGAGGTT 1141 TACGATACTG GTTATATGGA GACAAAATTC TTGATGATTC CTTTATAGAA GGTGTTTCAA 1201 GAATAAGGGG TTGGTTCCCT AGAAAATGTG TGGAAAAGTG TCCCTGTGAT GCTGAAACAG 1261 ATCAAGCCCC AGAGGGGGAG AAGAAAAATA GATACCCAAC TTTCTTGTAC AAAGTtggca 1321 ttataagaaa gcattgctta tcaatttgtt gcaacgaac