Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12572
- Subject:
- XM_011535227.3
- Aligned Length:
- 2611
- Identities:
- 777
- Gaps:
- 1814
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCCGAACGTGCTGCTGCCGCCCAAGGAGAGCAACCTCTTCAAACGCATCTTGAAATGTTATGAACAGAAGCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTACAAAAATGGCCTCAAGTTTTGCAAGATGATTCTGTCGAACCCAAAATTTGCTGAACATGGAGAGACTTTGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTATGAAAGGATTAACACTGAACTGTTTAGGAAAAAAAGAAGAAGCTTATGAGTTTGTTCGTAAAGGACTTCGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AATGATGTCAAGAGTCATGTCTGTTGGCATGTATATGGACTCTTGCAGCGTTCTGATAAAAAATATGATGAAGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TATAAAATGTTACCGAAATGCCCTCAAATTAGATAAAGATAACCTGCAAATTTTGAGGGATCTCTCACTGTTGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGATCCAAATGAGAGACCTTGAAGGTTACCGAGAGACAAGATACCAGCTTCTTCAGTTGCGCCCCACACAGCGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCTCCTGGATTGGATATGCTATTGCATACCATTTGCTGAAAGATTATGATATGGCCCTAAAACTGTTGGAAGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATTTAGACAAACTCAGCAAGTTCCTCCAAACAAAATAGATTATGAATATAGTGAATTGATATTATACCAGAATC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AAGTGATGAGAGAGGCAGATCTGTTGCAGGAATCTTTGGAACATATAGAAATGTATGAGAAACAAATATGTGAT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAACTTTTGGTGGAAGAAATTAAAGGGGAAATACTGTTGAAATTGGGAAGATTAAAAGAAGCCAGTGAAGTGTT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAAAAACTTGATTGATCGAAATGCAGAAAATTGGTGTTATTATGAAGGCTTGGAAAAAGCTCTACAAATTAGCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTTTAGAAGAGAGGCTTCAAATTTATGAAGAAATTAGTAAGCAGCACCCCAAAGCAATTACACCCAGAAGATTA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCTTTGACTCTTGTCCCAGGTGAAAGATTTAGAGAACTAATGGATAAGTTCCTGAGGGTTAACTTCAGTAAAGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTGCCCACCCTTGTTTACTACTTTGAAATCTTTATATTACAATACAGAAAAGGTTTCTATAATCCAGGAACTTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTACTAATTATGAAGCCTCTCTTAAAACGTGTGACTTTTTTAGCCCATATGAGAATGGGGAGAAGGAACCCCCG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACTTTGATAAACTTGGACAGTATTCTTTGGCTTTGGA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTATATTAATGCTGCAATTGCTAGTACTCCAACTCTAATAGAATTATTCTATATGAAAGCAAAAATTTACAAGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATATAGGTAATCTCAAAGAAGCTGCAAAGTGGATGGATGAAGCACAGTCTTTGGACACAGCTGATAGATTCATC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AATTCCAAATGTGCAAAATACATGCTTCGAGCAAATATGATAAAAGAAGCAGAGGAAATGTGCTCCAAGTTCAC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AAGGGAAGGAACATCTGCCATGGAAAATCTAAATGAAATGCAGTGTATGTGGTTTCAGACAGAATGCATTTCAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CTTATCAGCGTCTGGGGAGATACGGGGATGCCTTGAAAAAATGTCATGAAGTAGAAAGGCATTTTTTTGAGATA 1554
Query 1 ---------------------------------ATGAGAAAGATGACCCTTCGTGCCTATGTTGACCTTTTGAG 41
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 ACTGATGACCAATTCGACTTCCATACATACTGCATGAGAAAGATGACCCTTCGTGCCTATGTTGACCTTTTGAG 1628
Query 42 ATTAGAAGATATACTCAGAAGACATGCCTTTTATTTCAAGGCTGCTAGATCAGCGATTGAAATATACTTGAAAT 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 ATTAGAAGATATACTCAGAAGACATGCCTTTTATTTCAAGGCTGCTAGATCAGCGATTGAAATATACTTGAAAT 1702
Query 116 TGTATGATAATCCCTTAACCAATGAAAGCAAACAACAAGAAATAAACTCAGAAAACTTGTCAGCCAAAGAATTG 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TGTATGATAATCCCTTAACCAATGAAAGCAAACAACAAGAAATAAACTCAGAAAACTTGTCAGCCAAAGAATTG 1776
Query 190 AAGAAAATGCTTAGCAAGCAGAGAAGAGCTCAGAAAAAGGCTAAACTAGAAGAAGAAAGAAAGCATGCAGAAAG 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AAGAAAATGCTTAGCAAGCAGAGAAGAGCTCAGAAAAAGGCTAAACTAGAAGAAGAAAGAAAGCATGCAGAAAG 1850
Query 264 AGAACGTCAACAGAAAAATCAAAAGAAAAAAAGAGATGAAGAAGAAGAAGAAGCCAGTGGCCTTAAGGAAGAAC 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 AGAACGTCAACAGAAAAATCAAAAGAAAAAAAGAGATGAAGAAGAAGAAGAAGCCAGTGGCCTTAAGGAAGAAC 1924
Query 338 TTATACCTGAAAAATTAGAAAGGGTAGAAAATCCATTAGAGGAAGCCGTTAAGTTCCTTATACCTCTTAAGAAC 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TTATACCTGAAAAATTAGAAAGGGTAGAAAATCCATTAGAGGAAGCCGTTAAGTTCCTTATACCTCTTAAGAAC 1998
Query 412 CTTGTTGCTGATAACATTGACACTCATCTGTTAGCATTTGAAATATATTTTAGAAAAGGAAAGTTTCTGTTAAT 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 CTTGTTGCTGATAACATTGACACTCATCTGTTAGCATTTGAAATATATTTTAGAAAAGGAAAGTTTCTGTTAAT 2072
Query 486 GCTGCAGTCTGTCAAACGAGCTTTTGCCATTAACAGTAATAACCCATGGTTACATGAATGTTTAATTAGATTTT 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 GCTGCAGTCTGTCAAACGAGCTTTTGCCATTAACAGTAATAACCCATGGTTACATGAATGTTTAATTAGATTTT 2146
Query 560 CTAAATCTGTGTCTAATCATAGTAATCTTCCAGACATTGTGAGCAAAGTTCTATCTCAAGAAATGCAGAAAATA 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CTAAATCTGTGTCTAATCATAGTAATCTTCCAGACATTGTGAGCAAAGTTCTATCTCAAGAAATGCAGAAAATA 2220
Query 634 TTTGTCAAAAAGGATTTGGAAAGTTTTAATGAGGATTTTCTGAAACGTAACGCTACCTCTCTTCAGCATCTACT 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 TTTGTCAAAAAGGATTTGGAAAGTTTTAATGAGGATTTTCTGAAACGTAACGCTACCTCTCTTCAGCATCTACT 2294
Query 708 TTCAGGT------------------GCTAAAATGATGTATTTTCTGGACAAGTCAAGGCAGGAGAAAGCAATTG 763
||||||| |.|||||| ..||.||||.||..|.|...|.|||||||| .|||
Sbjct 2295 TTCAGGTTTGTTTGTAGCCCCCAGGGTTAAAAT------ACTTATGGAAAAAGCGAACAAAGAGAAAGC-TTTG 2361
Query 764 CTATAGCCACTAGACTAGATGAAACTATAAAAGATAAAGATGTAAAGACATTAATAAAGGTTTCTGAAGCACTG 837
|.|.||.| ||.|||||||| || |||.|| .||.||||
Sbjct 2362 --ACACCCCC--------------------------AAAATGTAAAG-CA--AATGAA--------CAGTACTG 2396
Query 838 CTTGATG-GCAGCTTTGGGAACTGTAGTTCCCAATATGAAGAATATAGGATGGCCTGTCATAACCTGCTTCCTT 910
|| || ||
Sbjct 2397 --TG-TGTGC---------------------------------------------------------------- 2403
Query 911 TTACATCTGCCTTCTTGCCTGCTGTGAATGAAGTCGACAATCCTAATGTGGCACTGAACCATACAGCTAATTAT 984
Sbjct 2404 -------------------------------------------------------------------------- 2403
Query 985 GATGTCTTGGCAAATGAAATT 1005
Sbjct 2404 --------------------- 2403
