Construct: ORF ccsbBroadEn_12572
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012641.1_s300c1, BRDN0000392597
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NAA16 (79612)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XM_005266523.2 | 74.1% | 74.1% | 1_351del |
| 2 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XM_017020744.1 | 74.1% | 74.1% | 1_351del |
| 3 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XM_006719866.3 | 41.6% | 41.6% | 1_1407del |
| 4 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | NM_024561.5 | 38.7% | 38.7% | 1_1587del |
| 5 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XM_011535227.3 | 29.7% | 27.5% | (many diffs) |
| 6 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XR_002957473.1 | 23.6% | 1_1804del;2810_4241del | |
| 7 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XR_001749673.2 | 23.1% | 1_1913del;2919_4350del | |
| 8 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XR_001749671.2 | 22.9% | 1_1947del;2953_4384del | |
| 9 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XR_001749669.2 | 22.5% | 1_2020del;3026_4457del | |
| 10 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XR_001749670.2 | 19.1% | 1_1840del;2547_3507del;3807_5238del | |
| 11 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XR_001749675.2 | 12.1% | 1_4905del;5612_6572del;6872_8303del | |
| 12 | mouse | 66897 | Naa16 | N(alpha)-acetyltransferase ... | XM_017316133.1 | 62.9% | 62.6% | (many diffs) |
| 13 | mouse | 66897 | Naa16 | N(alpha)-acetyltransferase ... | XM_006519399.1 | 38.9% | 38.6% | (many diffs) |
| 14 | mouse | 66897 | Naa16 | N(alpha)-acetyltransferase ... | NM_025832.2 | 33% | 32.7% | (many diffs) |
| 15 | mouse | 66897 | Naa16 | N(alpha)-acetyltransferase ... | XR_001781145.1 | 29.2% | (many diffs) | |
| 16 | mouse | 66897 | Naa16 | N(alpha)-acetyltransferase ... | XR_001781144.1 | 20.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1071
- ORF length:
- 1005
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG AAAGATGACC CTTCGTGCCT ATGTTGACCT TTTGAGATTA GAAGATATAC 121 TCAGAAGACA TGCCTTTTAT TTCAAGGCTG CTAGATCAGC GATTGAAATA TACTTGAAAT 181 TGTATGATAA TCCCTTAACC AATGAAAGCA AACAACAAGA AATAAACTCA GAAAACTTGT 241 CAGCCAAAGA ATTGAAGAAA ATGCTTAGCA AGCAGAGAAG AGCTCAGAAA AAGGCTAAAC 301 TAGAAGAAGA AAGAAAGCAT GCAGAAAGAG AACGTCAACA GAAAAATCAA AAGAAAAAAA 361 GAGATGAAGA AGAAGAAGAA GCCAGTGGCC TTAAGGAAGA ACTTATACCT GAAAAATTAG 421 AAAGGGTAGA AAATCCATTA GAGGAAGCCG TTAAGTTCCT TATACCTCTT AAGAACCTTG 481 TTGCTGATAA CATTGACACT CATCTGTTAG CATTTGAAAT ATATTTTAGA AAAGGAAAGT 541 TTCTGTTAAT GCTGCAGTCT GTCAAACGAG CTTTTGCCAT TAACAGTAAT AACCCATGGT 601 TACATGAATG TTTAATTAGA TTTTCTAAAT CTGTGTCTAA TCATAGTAAT CTTCCAGACA 661 TTGTGAGCAA AGTTCTATCT CAAGAAATGC AGAAAATATT TGTCAAAAAG GATTTGGAAA 721 GTTTTAATGA GGATTTTCTG AAACGTAACG CTACCTCTCT TCAGCATCTA CTTTCAGGTG 781 CTAAAATGAT GTATTTTCTG GACAAGTCAA GGCAGGAGAA AGCAATTGCT ATAGCCACTA 841 GACTAGATGA AACTATAAAA GATAAAGATG TAAAGACATT AATAAAGGTT TCTGAAGCAC 901 TGCTTGATGG CAGCTTTGGG AACTGTAGTT CCCAATATGA AGAATATAGG ATGGCCTGTC 961 ATAACCTGCT TCCTTTTACA TCTGCCTTCT TGCCTGCTGT GAATGAAGTC GACAATCCTA 1021 ATGTGGCACT GAACCATACA GCTAATTATG ATGTCTTGGC AAATGAAATT TGCCCAACTT 1081 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac