Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12574
- Subject:
- NR_131769.2
- Aligned Length:
- 5984
- Identities:
- 1005
- Gaps:
- 4964
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGTCAGCACTAATGGATAACTGAAAGCAAGTCGACAAAGATTTGGAAAATGAGGCATACGTCTAAAAGAAAAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CACAATATTATGAGGCTGAAATGGTACTGAAATATTACAAACACTTGGAGGAAGGCAGTGTCTCGCTCTGTTGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCAGGCTGGAGTGCAGTGGCACAATCACGGCTCACTGCTGCCTCAACCTTTGGTGCTCAAGTGATTCTTCTATT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCAGCTTTCTGAGCAGCTAAGACTACAGGAACTGAAGCTGCCCACCTTCCGAGCCCACTCCCCACTCCTGAAGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCCGCCGGTTCTTCGTGGACATCCTGACCCTGCTGAGCAGCCACTGCCAGCTCTGCCCTGCAGCCCGGCACCTG 370
Query 1 ------------------------ATGGATCGCTACAACGTCACCACCTCCAAGCAGCTCTACACCGTGGCCGT 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCCGTCTACCTGCTGGACCACTTCATGGATCGCTACAACGTCACCACCTCCAAGCAGCTCTACACCGTGGCCGT 444
Query 51 CTCCTGCCTCCTGCTTGCAAACGGAGTTTCGCTCTTATCGCCCAGGCTGAAGTGCAGTGG--CATGATCTCAGC 122
||||||||||||||||||| ||.|.||| ||..|| ||.|.|| |
Sbjct 445 CTCCTGCCTCCTGCTTGCA------------------------AGTCGGAA---CAAAGGATCAGGGTC----C 487
Query 123 TCATTGCAACCTCCACCTCCCAGGTTCA----AGCAATTCTCCTGCTTCAGCGCCCCACCCCCCAC-----CCA 187
.||.||| ||| ||.||||| ||||.|.| |.|||| || |||
Sbjct 488 CCAGTGC-----CCA-----CACGTTCAGCGCAGCAGTGC-----CGTCAG-------------ACCTGGGCCA 533
Query 188 CA--CCGCCCCAAGTAGCTGAGACTACAGGTAAGTTCGAGGATCGGGAAGACCACGTCCCCAAGTTGGAGCAAA 259
.| |.|||| |.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GAGGCAGCCC----------------CTGGTAAGTTCGAGGATCGGGAAGACCACGTCCCCAAGTTGGAGCAAA 591
Query 260 TAAACAGCACGAGGATCCTGAGCAGCCAGAACTTCACCCTCACCAAGAAGGAGCTGCTGAGCACAGAGCTGCTG 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TAAACAGCACGAGGATCCTGAGCAGCCAGAACTTCACCCTCACCAAGAAGGAGCTGCTGAGCACAGAGCTGCTG 665
Query 334 CTCCTGGAGGCCTTCAGCTGGAACCTCTGCCTGCCCACGCCTGCCCACTTCCTGGACTACTACCTCTTGGCCTC 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 CTCCTGGAGGCCTTCAGCTGGAACCTCTGCCTGCCCACGCCTGCCCACTTCCTGGACTACTACCTCTTGGCCTC 739
Query 408 CGTCAGCCAGAAGGACCACCACTGCCACACCTGGCCCACCACCTGCCCCCGCAAGACCAAAGAGTGCCTCAAGG 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 CGTCAGCCAGAAGGACCACCACTGCCACACCTGGCCCACCACCTGCCCCCGCAAGACCAAAGAGTGCCTCAAGG 813
Query 482 AGTATGCCCATTACTTCCTAGAGGTCACCCTGCAAGATCACATATTCTACAAATTCCAGCCTTCTGTGGTCGCT 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 AGTATGCCCATTACTTCCTAGAGGTCACCCTGCAAGATCACATATTCTACAAATTCCAGCCTTCTGTGGTCGCT 887
Query 556 GCGGCCTGTGTTGGGGCCTCCAGGATTTGCCTGCAGCTTTCTCCCTACTGGACCAGAGACCTGCAGAGGATCTC 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 GCGGCCTGTGTTGGGGCCTCCAGGATTTGCCTGCAGCTTTCTCCCTACTGGACCAGAGACCTGCAGAGGATCTC 961
Query 630 AAGCTATTCCCTGGAGCACCTCAGCACGTGTATTGAAATCCTGCTGGT-------------------------- 677
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 AAGCTATTCCCTGGAGCACCTCAGCACGTGTATTGAAATCCTGCTGGTCCCCCTTTTCAGATGAAAAATCCTAG 1035
Query 678 -------------------------------------------------------------------------- 677
Sbjct 1036 GCCCCAGCGGTCAATTTGGTTGATATCAGCTAGCTAAGGAGTGACCCCGCTGGGGATGGAGCTGGCCCAGAATT 1109
Query 678 -------------------------------------------------------------------------- 677
Sbjct 1110 GCCTGGAAAGCAGAGATTGGGCTCATTCAGGCCCCAGGAACACTCCAGTGCCAGGGGATGGGAAGGCATTGGTG 1183
Query 678 ---------------------------------AGTGTATGACAACGTCCTCAAGGATGCCGTAGCCGTCAAGA 718
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 AGCACAAGCAGGCGCCATCCTCCTGGAAGCCAGAGTGTATGACAACGTCCTCAAGGATGCCGTAGCCGTCAAGA 1257
Query 719 GCCAGGCCTTGGCAATGGTGCCCGGCACACCCCCCACCCCCACTCAAGTGCTGTTCCAGCCACCAGCCTACCCG 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GCCAGGCCTTGGCAATGGTGCCCGGCACACCCCCCACCCCCACTCAAGTGCTGTTCCAGCCACCAGCCTACCCG 1331
Query 793 GCCCTCGGCCAGCCAGCGACCACCCTGGCACAGTTCCAGACCCCCGTGCAGGACCTATGCTTGGCCTATCGGGA 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 GCCCTCGGCCAGCCAGCGACCACCCTGGCACAGTTCCAGACCCCCGTGCAGGACCTATGCTTGGCCTATCGGGA 1405
Query 867 CTCCTTGCAGGCCCACCGTTCAGGGAGCCTGCTCTCGGGGAGTACAGGCTCATCCCTCCACACCCCGTACCAAC 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 CTCCTTGCAGGCCCACCGTTCAGGGAGCCTGCTCTCGGGGAGTACAGGCTCATCCCTCCACACCCCGTACCAAC 1479
Query 941 CGCTGCAGCCCTTGGATATGTGTCCCGTGCCCGTCCCTGCATCCCTTAGCATGCATATGGCCATTGCAGCTGAG 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 CGCTGCAGCCCTTGGATATGTGTCCCGTGCCCGTCCCTGCATCCCTTAGCATGCATATGGCCATTGCAGCTGAG 1553
Query 1015 CCCAGGCACTGCCTCGCCACCACCTATGGAAGCAGCTACTTCAGTGGGAGCCACATGTTCCCCACCGGCTGCTT 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 CCCAGGCACTGCCTCGCCACCACCTATGGAAGCAGCTACTTCAGTGGGAGCCACATGTTCCCCACCGGCTGCTT 1627
Query 1089 TGACAGA------------------------------------------------------------------- 1095
|||||||
Sbjct 1628 TGACAGATAGGCCACCTCCAGACCTCACGAGGAAGCCTTGGAGATGTGGGCAGAGGAAGAGGACACTGAAGAGG 1701
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1702 AGAGCTCAGCCAAGTGAGGCAGCAGGAGGCCATCCCTGAAGAGCCTTGGAACGTGGAGGGTCTGTGCTCCTTTT 1775
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1776 AAATAAAACTGACCCAGAGCAAAACATTCAATAACATACCTCACCCGAGAGCATTCCTCTGAGAAACGTCTGCC 1849
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1850 ACGTGTGGCTAGGGTACAAAAGGATGGCTTGGTGGCCGTCCCCCCACACAGGGGCCCAGTGAATCGAGAAAGAC 1923
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1924 TTGATAAGAGGCCAGGAGAGTGGGAACTGGACACAGACCACTGATCTCAAGCATGTCCAGTTTTTAGCATTAAA 1997
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1998 GACTTTTCTATTCTTTGCTGATGGCAGCTACACCGCTGAAAAAGGAGGGGCAGCCTGGCGTGTTCTCAGGACCC 2071
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2072 CCGGAGGATCCCATATTGGGTGCTTTTCTTTCCCTGGCTCTATGCAGAGGGGCCTGAGTTGGTGTGTATGCCTG 2145
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2146 AGTGTTTGCCTTGCGAGGCACAGTGGGTGGCTGTCTTGCCTTTGTTTTCGAACCTAAAACCATTTTCAGCCTTT 2219
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2220 TAGATATGTCATGTGCTGCTGCTTCCCGAAGTGGTCTTGCTTTCTGTTTCGTAAGATGTCTTGTTTACACACTG 2293
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2294 TATCAGGGATTTGGTGATACTTGAAAATTCCTTTGGAGAAAAAAACAAATTTAATTGCCACACTGCCTGTCCCA 2367
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2368 CATGAGGGCTGTTAATTTGGAACCCAAGTTTGAACCCAACTTGTGATGGACCCGCAGGTAACCACAGAGCTTCC 2441
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2442 TTTTTGAAGGCATATGGTTGGAGAGAACCATTTTCCCAGCTCTCGGTTCCGGAAGATTCCACGTCTTGGAGGCT 2515
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2516 GTGTTCACCACTAGAACTTTAATAACTACCCAGGGAGGGAGAAGCTCGTTGAAAGGAAGACAAAGATTTAAACA 2589
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2590 GTTCCCACCTCTCTCCACCACATACTTACAGGGCATGAGTTTAACCCAGTCTAGGCTTTGAGTGTGGCTGATAG 2663
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2664 CGAAGGATAGCAATGTGGAAAATTTGCTTAGTCCCACCTGTATTTGGGGAGTGGGATGTACATGGGCGTTTGAT 2737
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2738 ACCACCATTGATAGGCAAGCGACTGGTTGGATCAAAAGCCAGTATTTAGGGATCTGCAGCGAGAGGGCCCTCAG 2811
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2812 GAAGACTCTTGTAACCATGTGCAATATGTTTTTATTCTGACTCGCAGCTTGTGCTCAGCATGTTCTTTGGTTTA 2885
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2886 GTTTGGGGTTGGGGGACACATTGTTCACCCAGCAGAACTGGGAGGTGCAAAGGACCGTGGAAGCAATTTTTGTT 2959
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2960 TTGTTTGAGGAATACCTGTCTTGGATTCCTTAGCCCCTTGCCAGTCCTGGAGACTGTGGCAGGGGCCGCCAGGA 3033
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3034 AGGCAGCTGTCTGCTGCTGAGTCAGATCGGAAGGTGGTGAATCTTTCCAGAGCAGCTGAAAATCTCAGCATGGA 3107
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3108 GACAGTAAGAAAAGAGACGGGGTGTGGATAAGACTCTGCCACCGTGTCACACTAGCATAGGAGGCTGCACGTTC 3181
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3182 ATTTGTTGTTGTTTTTTTTTCCTTTGCCAACCTCCGTTCTATTTATGTGCAAGCAGTTTGGATTCAAGTTCTTG 3255
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3256 TATCTGTCTGTTCTGGGACCTGGGGATTGTGAGGGTTCCCTCACAGCCAGCACGACCCCCAGAAAGAGGCGTCC 3329
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3330 CACAATAAACACGTCACCTGCTCTTGATCTCTCACCTCTTGTCCTAGGCATCCCCTCTTGGGCCGGCCCCTCCT 3403
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3404 TCCCTCTCTCAAATCAGCCCTGGTGAGCATCTCCCTATGGTAGAGGGTGGAATATTGGGGGCAGCAGCAAGACC 3477
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3478 TCGGGAGCTGAGTCCTGCCCTCTGAGTAGGAGCTGGGCCTCCCTGGGCACACAGAGGCCAGCGGAGGGGTGTAT 3551
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3552 AAGGCTTGACACCCCAGCTCCATCACCGTCTCAGGGTTTTTCCAAAGAAACCAGTAGGATATATATGGAGAGAG 3625
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3626 ATTTATTTTAAGGAATTGGCTCATGTGATTGCAGAGGCTGTGGTCTAAAATTTGTGGGGCATGTCAGCAGGCTG 3699
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3700 GAAATTCAGGTAAGAGCTGATGTTGCAGTAGAGTTCAAAATCTGTAGGGCAGGCCCACAGGCTGGAAACTCAGG 3773
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3774 CATGATTTCTGTGTTAGCAGTCGTGAGGCAAAATTTATTCTCCAGGAAACCTCAATCTTTGCTCTTACGACCTT 3847
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3848 TTACCAGTTGGATGAGGCCCACCCACATTATGGAGGCTTTTCTTAAAGTCAACTGATTGTAAATGTTAATCACA 3921
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3922 TCTAAAAATACCTTGACAGCAACATCTAGACTAGTACCTAGCCACACAACAGGCACTGTAGCCTAGCCAAGCTG 3995
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3996 CCACATAAACTTAATGATCACACCACTTACCAGCTGTTGGAAGGCAGTTGACCCAACCTCTCTCTGAGCCTCCA 4069
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 4070 TCTTGTCACCTGTTAAAATGGGAGTGATAACACCTTGCCTCATAGGGTTCTTAAGAGGATTAAATAACATAATG 4143
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 4144 TACATCAAGGCCAGTACCTCCAAAAAAGGAGATAATTATTATATTTCTTCAAGCATAAGATCAGCTTTTTGTAA 4217
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 4218 GATGCACTATTATTTTATGCACTAATAAGACTTTTTAGAAAACTAAATCATGAGGCAGTTTGCAAGATACCATT 4291
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 4292 GATTATATGTTGCATTCTGATTTCAGAAGCGTTACATGTCAAAATATGTATATGTAGAATTGATGAGATATAGC 4365
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 4366 ATCAGCTGTTATGAAAAATGTCAGATTCGTACTCCTCCTTGAAGGGAGTCTCACTCAAGACTTCTGTCTTGCCC 4439
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 4440 TCTACCTACCCAGCTTCCAGCAGGAGAACCACCCCAGAGAGCCGGTGTCACTGTGGGGCTGAGACATTTGCTAA 4513
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 4514 GTGCAGATGCCTTTGATTAGACAATTAGGGGAGGAATGGGAAGATGAGCTCAGGGCCTGAGGCTGCAGCCCAGA 4587
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 4588 CCCAGGAGTGTGTTTGACACCGCCAAGGGCGGGGCTGAGGGCAGTGCTCACCACCCGCTGTGTGCAAGGCTAGG 4661
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 4662 TGAGGCAGGAAGCTCTAAGTTTTGGGGATTCAGAGACAAGGCAAGTCTTGGGTTGACCAAGAGCACCCACCTCA 4735
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 4736 CTTTGGACAAATCCCTCCCTCTTTGGGCTTCCATTTCTCCATCTGTTACTATGGAGATGGTCAAGTTGGTGGAT 4809
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 4810 GGTTCTAAGCTCTTGGGGCGGGGGGAGACTGTGCCACAGAGGCTGTGACCTCTGTGGCCTTCAGCCAGAGGGAT 4883
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 4884 CCACTTGTATTTCTTCCACCCTTGGGCACTCCCATGTAAGATTGTGTTAATTCCCATGCTGGAGGACAGCTATG 4957
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 4958 AAAGCTTTAAAAAGCACAAAGATAGTCTTAAAGTTCCTCCCAGGGCTGGCATCAGGTTAAATTCAGAGGTTTTC 5031
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 5032 AAGCCTGAGCAAGCTGCAGAATGACCTGGAGCCTTCTCTAGGAGGGGTGGGGACCTGGAATCTGCACTTTAGCC 5105
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 5106 AGCTTCTTGGTCATTCAGGCATATGATTTCTTTGTTTGTTTTTTATATTTCAGTTGTATTTTTATAACTCCCCA 5179
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 5180 GTTTAGTTTGATTTTTTAAATTTTTATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTTG 5253
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 5254 AAACAGGGTCTCACTCTGTGGCCCAGGCTAGAGTGCAGTGGCACAGTCACGGCTCACTGCAGCTTCAACCTTCT 5327
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 5328 GGGCTCAAGTGATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACCTGTCACCATACCCAGCTAA 5401
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 5402 TTTTGGTATTTTTTGTAGAGATGAGGTTTCACCATGTTGTCCAGGCTGGTCTCAGACTCCTGAGCTCAAGCAAT 5475
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 5476 CTGACTGCCTCGGCCTCCCAAAGTGCTGAGATTACAGGTATAAGCCACTACGCCTGGTCCAGCTTGTTTTGAAA 5549
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 5550 AGTATTTTCTGACGTCTATATGAATTTAACAGAATTATCTCAAAGTACACAGAAATTACCTGTATTTGCCAGTA 5623
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 5624 AATATGAGATGCTGATGAAAGAATACTCAATATACCAATATTTAAGCATGTCAACATAATAGAACTTTTTCCAC 5697
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 5698 CTTTTAAAATTATTTTTCCCACCTAACCCAATTTATATTTGACATTTGGGTTACATGTGCATATAGAAACAGAC 5771
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 5772 CTATTCCACAACTGACCATAGATAAACTAGCATGCAAGTGTCCTTTCTGGATGTAATTAAGTTTCAGAGGCAGC 5845
Query 1096 ---------------------------------------------------------------- 1095
Sbjct 5846 ATGGTTCAAATGGGAGCAAATGAGCTGACCTCCTCATGAAATACACTAGGCAAAAAATCAAGAA 5909
