Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12574
Subject:
NR_131769.2
Aligned Length:
5984
Identities:
1005
Gaps:
4964

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGTCAGCACTAATGGATAACTGAAAGCAAGTCGACAAAGATTTGGAAAATGAGGCATACGTCTAAAAGAAAAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CACAATATTATGAGGCTGAAATGGTACTGAAATATTACAAACACTTGGAGGAAGGCAGTGTCTCGCTCTGTTGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCAGGCTGGAGTGCAGTGGCACAATCACGGCTCACTGCTGCCTCAACCTTTGGTGCTCAAGTGATTCTTCTATT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCAGCTTTCTGAGCAGCTAAGACTACAGGAACTGAAGCTGCCCACCTTCCGAGCCCACTCCCCACTCCTGAAGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCCGCCGGTTCTTCGTGGACATCCTGACCCTGCTGAGCAGCCACTGCCAGCTCTGCCCTGCAGCCCGGCACCTG  370

Query    1  ------------------------ATGGATCGCTACAACGTCACCACCTCCAAGCAGCTCTACACCGTGGCCGT  50
                                    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GCCGTCTACCTGCTGGACCACTTCATGGATCGCTACAACGTCACCACCTCCAAGCAGCTCTACACCGTGGCCGT  444

Query   51  CTCCTGCCTCCTGCTTGCAAACGGAGTTTCGCTCTTATCGCCCAGGCTGAAGTGCAGTGG--CATGATCTCAGC  122
            |||||||||||||||||||                        ||.|.|||   ||..||  ||.|.||    |
Sbjct  445  CTCCTGCCTCCTGCTTGCA------------------------AGTCGGAA---CAAAGGATCAGGGTC----C  487

Query  123  TCATTGCAACCTCCACCTCCCAGGTTCA----AGCAATTCTCCTGCTTCAGCGCCCCACCCCCCAC-----CCA  187
            .||.|||     |||     ||.|||||    ||||.|.|     |.||||             ||     |||
Sbjct  488  CCAGTGC-----CCA-----CACGTTCAGCGCAGCAGTGC-----CGTCAG-------------ACCTGGGCCA  533

Query  188  CA--CCGCCCCAAGTAGCTGAGACTACAGGTAAGTTCGAGGATCGGGAAGACCACGTCCCCAAGTTGGAGCAAA  259
            .|  |.||||                |.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  534  GAGGCAGCCC----------------CTGGTAAGTTCGAGGATCGGGAAGACCACGTCCCCAAGTTGGAGCAAA  591

Query  260  TAAACAGCACGAGGATCCTGAGCAGCCAGAACTTCACCCTCACCAAGAAGGAGCTGCTGAGCACAGAGCTGCTG  333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  592  TAAACAGCACGAGGATCCTGAGCAGCCAGAACTTCACCCTCACCAAGAAGGAGCTGCTGAGCACAGAGCTGCTG  665

Query  334  CTCCTGGAGGCCTTCAGCTGGAACCTCTGCCTGCCCACGCCTGCCCACTTCCTGGACTACTACCTCTTGGCCTC  407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  666  CTCCTGGAGGCCTTCAGCTGGAACCTCTGCCTGCCCACGCCTGCCCACTTCCTGGACTACTACCTCTTGGCCTC  739

Query  408  CGTCAGCCAGAAGGACCACCACTGCCACACCTGGCCCACCACCTGCCCCCGCAAGACCAAAGAGTGCCTCAAGG  481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  740  CGTCAGCCAGAAGGACCACCACTGCCACACCTGGCCCACCACCTGCCCCCGCAAGACCAAAGAGTGCCTCAAGG  813

Query  482  AGTATGCCCATTACTTCCTAGAGGTCACCCTGCAAGATCACATATTCTACAAATTCCAGCCTTCTGTGGTCGCT  555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  814  AGTATGCCCATTACTTCCTAGAGGTCACCCTGCAAGATCACATATTCTACAAATTCCAGCCTTCTGTGGTCGCT  887

Query  556  GCGGCCTGTGTTGGGGCCTCCAGGATTTGCCTGCAGCTTTCTCCCTACTGGACCAGAGACCTGCAGAGGATCTC  629
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  888  GCGGCCTGTGTTGGGGCCTCCAGGATTTGCCTGCAGCTTTCTCCCTACTGGACCAGAGACCTGCAGAGGATCTC  961

Query  630  AAGCTATTCCCTGGAGCACCTCAGCACGTGTATTGAAATCCTGCTGGT--------------------------  677
            ||||||||||||||||||||||||||||||||||||||||||||||||                          
Sbjct  962  AAGCTATTCCCTGGAGCACCTCAGCACGTGTATTGAAATCCTGCTGGTCCCCCTTTTCAGATGAAAAATCCTAG  1035

Query  678  --------------------------------------------------------------------------  677
                                                                                      
Sbjct 1036  GCCCCAGCGGTCAATTTGGTTGATATCAGCTAGCTAAGGAGTGACCCCGCTGGGGATGGAGCTGGCCCAGAATT  1109

Query  678  --------------------------------------------------------------------------  677
                                                                                      
Sbjct 1110  GCCTGGAAAGCAGAGATTGGGCTCATTCAGGCCCCAGGAACACTCCAGTGCCAGGGGATGGGAAGGCATTGGTG  1183

Query  678  ---------------------------------AGTGTATGACAACGTCCTCAAGGATGCCGTAGCCGTCAAGA  718
                                             |||||||||||||||||||||||||||||||||||||||||
Sbjct 1184  AGCACAAGCAGGCGCCATCCTCCTGGAAGCCAGAGTGTATGACAACGTCCTCAAGGATGCCGTAGCCGTCAAGA  1257

Query  719  GCCAGGCCTTGGCAATGGTGCCCGGCACACCCCCCACCCCCACTCAAGTGCTGTTCCAGCCACCAGCCTACCCG  792
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258  GCCAGGCCTTGGCAATGGTGCCCGGCACACCCCCCACCCCCACTCAAGTGCTGTTCCAGCCACCAGCCTACCCG  1331

Query  793  GCCCTCGGCCAGCCAGCGACCACCCTGGCACAGTTCCAGACCCCCGTGCAGGACCTATGCTTGGCCTATCGGGA  866
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332  GCCCTCGGCCAGCCAGCGACCACCCTGGCACAGTTCCAGACCCCCGTGCAGGACCTATGCTTGGCCTATCGGGA  1405

Query  867  CTCCTTGCAGGCCCACCGTTCAGGGAGCCTGCTCTCGGGGAGTACAGGCTCATCCCTCCACACCCCGTACCAAC  940
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406  CTCCTTGCAGGCCCACCGTTCAGGGAGCCTGCTCTCGGGGAGTACAGGCTCATCCCTCCACACCCCGTACCAAC  1479

Query  941  CGCTGCAGCCCTTGGATATGTGTCCCGTGCCCGTCCCTGCATCCCTTAGCATGCATATGGCCATTGCAGCTGAG  1014
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480  CGCTGCAGCCCTTGGATATGTGTCCCGTGCCCGTCCCTGCATCCCTTAGCATGCATATGGCCATTGCAGCTGAG  1553

Query 1015  CCCAGGCACTGCCTCGCCACCACCTATGGAAGCAGCTACTTCAGTGGGAGCCACATGTTCCCCACCGGCTGCTT  1088
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554  CCCAGGCACTGCCTCGCCACCACCTATGGAAGCAGCTACTTCAGTGGGAGCCACATGTTCCCCACCGGCTGCTT  1627

Query 1089  TGACAGA-------------------------------------------------------------------  1095
            |||||||                                                                   
Sbjct 1628  TGACAGATAGGCCACCTCCAGACCTCACGAGGAAGCCTTGGAGATGTGGGCAGAGGAAGAGGACACTGAAGAGG  1701

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 1702  AGAGCTCAGCCAAGTGAGGCAGCAGGAGGCCATCCCTGAAGAGCCTTGGAACGTGGAGGGTCTGTGCTCCTTTT  1775

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 1776  AAATAAAACTGACCCAGAGCAAAACATTCAATAACATACCTCACCCGAGAGCATTCCTCTGAGAAACGTCTGCC  1849

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 1850  ACGTGTGGCTAGGGTACAAAAGGATGGCTTGGTGGCCGTCCCCCCACACAGGGGCCCAGTGAATCGAGAAAGAC  1923

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 1924  TTGATAAGAGGCCAGGAGAGTGGGAACTGGACACAGACCACTGATCTCAAGCATGTCCAGTTTTTAGCATTAAA  1997

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 1998  GACTTTTCTATTCTTTGCTGATGGCAGCTACACCGCTGAAAAAGGAGGGGCAGCCTGGCGTGTTCTCAGGACCC  2071

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2072  CCGGAGGATCCCATATTGGGTGCTTTTCTTTCCCTGGCTCTATGCAGAGGGGCCTGAGTTGGTGTGTATGCCTG  2145

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2146  AGTGTTTGCCTTGCGAGGCACAGTGGGTGGCTGTCTTGCCTTTGTTTTCGAACCTAAAACCATTTTCAGCCTTT  2219

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2220  TAGATATGTCATGTGCTGCTGCTTCCCGAAGTGGTCTTGCTTTCTGTTTCGTAAGATGTCTTGTTTACACACTG  2293

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2294  TATCAGGGATTTGGTGATACTTGAAAATTCCTTTGGAGAAAAAAACAAATTTAATTGCCACACTGCCTGTCCCA  2367

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2368  CATGAGGGCTGTTAATTTGGAACCCAAGTTTGAACCCAACTTGTGATGGACCCGCAGGTAACCACAGAGCTTCC  2441

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2442  TTTTTGAAGGCATATGGTTGGAGAGAACCATTTTCCCAGCTCTCGGTTCCGGAAGATTCCACGTCTTGGAGGCT  2515

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2516  GTGTTCACCACTAGAACTTTAATAACTACCCAGGGAGGGAGAAGCTCGTTGAAAGGAAGACAAAGATTTAAACA  2589

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2590  GTTCCCACCTCTCTCCACCACATACTTACAGGGCATGAGTTTAACCCAGTCTAGGCTTTGAGTGTGGCTGATAG  2663

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2664  CGAAGGATAGCAATGTGGAAAATTTGCTTAGTCCCACCTGTATTTGGGGAGTGGGATGTACATGGGCGTTTGAT  2737

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2738  ACCACCATTGATAGGCAAGCGACTGGTTGGATCAAAAGCCAGTATTTAGGGATCTGCAGCGAGAGGGCCCTCAG  2811

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2812  GAAGACTCTTGTAACCATGTGCAATATGTTTTTATTCTGACTCGCAGCTTGTGCTCAGCATGTTCTTTGGTTTA  2885

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2886  GTTTGGGGTTGGGGGACACATTGTTCACCCAGCAGAACTGGGAGGTGCAAAGGACCGTGGAAGCAATTTTTGTT  2959

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2960  TTGTTTGAGGAATACCTGTCTTGGATTCCTTAGCCCCTTGCCAGTCCTGGAGACTGTGGCAGGGGCCGCCAGGA  3033

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3034  AGGCAGCTGTCTGCTGCTGAGTCAGATCGGAAGGTGGTGAATCTTTCCAGAGCAGCTGAAAATCTCAGCATGGA  3107

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3108  GACAGTAAGAAAAGAGACGGGGTGTGGATAAGACTCTGCCACCGTGTCACACTAGCATAGGAGGCTGCACGTTC  3181

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3182  ATTTGTTGTTGTTTTTTTTTCCTTTGCCAACCTCCGTTCTATTTATGTGCAAGCAGTTTGGATTCAAGTTCTTG  3255

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3256  TATCTGTCTGTTCTGGGACCTGGGGATTGTGAGGGTTCCCTCACAGCCAGCACGACCCCCAGAAAGAGGCGTCC  3329

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3330  CACAATAAACACGTCACCTGCTCTTGATCTCTCACCTCTTGTCCTAGGCATCCCCTCTTGGGCCGGCCCCTCCT  3403

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3404  TCCCTCTCTCAAATCAGCCCTGGTGAGCATCTCCCTATGGTAGAGGGTGGAATATTGGGGGCAGCAGCAAGACC  3477

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3478  TCGGGAGCTGAGTCCTGCCCTCTGAGTAGGAGCTGGGCCTCCCTGGGCACACAGAGGCCAGCGGAGGGGTGTAT  3551

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3552  AAGGCTTGACACCCCAGCTCCATCACCGTCTCAGGGTTTTTCCAAAGAAACCAGTAGGATATATATGGAGAGAG  3625

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3626  ATTTATTTTAAGGAATTGGCTCATGTGATTGCAGAGGCTGTGGTCTAAAATTTGTGGGGCATGTCAGCAGGCTG  3699

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3700  GAAATTCAGGTAAGAGCTGATGTTGCAGTAGAGTTCAAAATCTGTAGGGCAGGCCCACAGGCTGGAAACTCAGG  3773

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3774  CATGATTTCTGTGTTAGCAGTCGTGAGGCAAAATTTATTCTCCAGGAAACCTCAATCTTTGCTCTTACGACCTT  3847

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3848  TTACCAGTTGGATGAGGCCCACCCACATTATGGAGGCTTTTCTTAAAGTCAACTGATTGTAAATGTTAATCACA  3921

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3922  TCTAAAAATACCTTGACAGCAACATCTAGACTAGTACCTAGCCACACAACAGGCACTGTAGCCTAGCCAAGCTG  3995

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3996  CCACATAAACTTAATGATCACACCACTTACCAGCTGTTGGAAGGCAGTTGACCCAACCTCTCTCTGAGCCTCCA  4069

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 4070  TCTTGTCACCTGTTAAAATGGGAGTGATAACACCTTGCCTCATAGGGTTCTTAAGAGGATTAAATAACATAATG  4143

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 4144  TACATCAAGGCCAGTACCTCCAAAAAAGGAGATAATTATTATATTTCTTCAAGCATAAGATCAGCTTTTTGTAA  4217

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 4218  GATGCACTATTATTTTATGCACTAATAAGACTTTTTAGAAAACTAAATCATGAGGCAGTTTGCAAGATACCATT  4291

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 4292  GATTATATGTTGCATTCTGATTTCAGAAGCGTTACATGTCAAAATATGTATATGTAGAATTGATGAGATATAGC  4365

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 4366  ATCAGCTGTTATGAAAAATGTCAGATTCGTACTCCTCCTTGAAGGGAGTCTCACTCAAGACTTCTGTCTTGCCC  4439

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 4440  TCTACCTACCCAGCTTCCAGCAGGAGAACCACCCCAGAGAGCCGGTGTCACTGTGGGGCTGAGACATTTGCTAA  4513

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 4514  GTGCAGATGCCTTTGATTAGACAATTAGGGGAGGAATGGGAAGATGAGCTCAGGGCCTGAGGCTGCAGCCCAGA  4587

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 4588  CCCAGGAGTGTGTTTGACACCGCCAAGGGCGGGGCTGAGGGCAGTGCTCACCACCCGCTGTGTGCAAGGCTAGG  4661

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 4662  TGAGGCAGGAAGCTCTAAGTTTTGGGGATTCAGAGACAAGGCAAGTCTTGGGTTGACCAAGAGCACCCACCTCA  4735

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 4736  CTTTGGACAAATCCCTCCCTCTTTGGGCTTCCATTTCTCCATCTGTTACTATGGAGATGGTCAAGTTGGTGGAT  4809

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 4810  GGTTCTAAGCTCTTGGGGCGGGGGGAGACTGTGCCACAGAGGCTGTGACCTCTGTGGCCTTCAGCCAGAGGGAT  4883

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 4884  CCACTTGTATTTCTTCCACCCTTGGGCACTCCCATGTAAGATTGTGTTAATTCCCATGCTGGAGGACAGCTATG  4957

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 4958  AAAGCTTTAAAAAGCACAAAGATAGTCTTAAAGTTCCTCCCAGGGCTGGCATCAGGTTAAATTCAGAGGTTTTC  5031

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 5032  AAGCCTGAGCAAGCTGCAGAATGACCTGGAGCCTTCTCTAGGAGGGGTGGGGACCTGGAATCTGCACTTTAGCC  5105

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 5106  AGCTTCTTGGTCATTCAGGCATATGATTTCTTTGTTTGTTTTTTATATTTCAGTTGTATTTTTATAACTCCCCA  5179

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 5180  GTTTAGTTTGATTTTTTAAATTTTTATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTTG  5253

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 5254  AAACAGGGTCTCACTCTGTGGCCCAGGCTAGAGTGCAGTGGCACAGTCACGGCTCACTGCAGCTTCAACCTTCT  5327

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 5328  GGGCTCAAGTGATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACCTGTCACCATACCCAGCTAA  5401

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 5402  TTTTGGTATTTTTTGTAGAGATGAGGTTTCACCATGTTGTCCAGGCTGGTCTCAGACTCCTGAGCTCAAGCAAT  5475

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 5476  CTGACTGCCTCGGCCTCCCAAAGTGCTGAGATTACAGGTATAAGCCACTACGCCTGGTCCAGCTTGTTTTGAAA  5549

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 5550  AGTATTTTCTGACGTCTATATGAATTTAACAGAATTATCTCAAAGTACACAGAAATTACCTGTATTTGCCAGTA  5623

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 5624  AATATGAGATGCTGATGAAAGAATACTCAATATACCAATATTTAAGCATGTCAACATAATAGAACTTTTTCCAC  5697

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 5698  CTTTTAAAATTATTTTTCCCACCTAACCCAATTTATATTTGACATTTGGGTTACATGTGCATATAGAAACAGAC  5771

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 5772  CTATTCCACAACTGACCATAGATAAACTAGCATGCAAGTGTCCTTTCTGGATGTAATTAAGTTTCAGAGGCAGC  5845

Query 1096  ----------------------------------------------------------------  1095
                                                                            
Sbjct 5846  ATGGTTCAAATGGGAGCAAATGAGCTGACCTCCTCATGAAATACACTAGGCAAAAAATCAAGAA  5909

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