Construct: ORF ccsbBroadEn_12574

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010907.1_s300c1, BRDN0000387009
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCNJL (79616)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79616 CCNJL cyclin J like XM_011534646.3 100% 100%
2 human 79616 CCNJL cyclin J like XM_011534647.3 87.2% 83% (many diffs)
3 human 79616 CCNJL cyclin J like XM_017009848.1 86.8% 86.5% 70_71ins144
4 human 79616 CCNJL cyclin J like XM_006714917.4 84.4% 84.4% 1_201del
5 human 79616 CCNJL cyclin J like NM_024565.7 83.9% 83.9% 1_210del
6 human 79616 CCNJL cyclin J like NM_001308173.2 72.8% 72.6% 1_210del;280_281ins144
7 human 79616 CCNJL cyclin J like XM_017009847.1 68.4% 40.2% (many diffs)
8 human 79616 CCNJL cyclin J like XM_017009846.2 67.9% 67.9% 1_516del
9 human 79616 CCNJL cyclin J like XR_427810.4 30.2% 1_588del;1266_1472del;1891_3619del
10 human 79616 CCNJL cyclin J like XR_427811.3 27% (many diffs)
11 human 79616 CCNJL cyclin J like NR_131769.2 16.7% (many diffs)
12 mouse 380694 Ccnjl cyclin J-like NM_001045530.2 75% 64.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1161
ORF length:
1095
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA TCGCTACAAC GTCACCACCT CCAAGCAGCT CTACACCGTG GCCGTCTCCT
121GCCTCCTGCT TGCAAACGGA GTTTCGCTCT TATCGCCCAG GCTGAAGTGC AGTGGCATGA
181TCTCAGCTCA TTGCAACCTC CACCTCCCAG GTTCAAGCAA TTCTCCTGCT TCAGCGCCCC
241ACCCCCCACC CACACCGCCC CAAGTAGCTG AGACTACAGG TAAGTTCGAG GATCGGGAAG
301ACCACGTCCC CAAGTTGGAG CAAATAAACA GCACGAGGAT CCTGAGCAGC CAGAACTTCA
361CCCTCACCAA GAAGGAGCTG CTGAGCACAG AGCTGCTGCT CCTGGAGGCC TTCAGCTGGA
421ACCTCTGCCT GCCCACGCCT GCCCACTTCC TGGACTACTA CCTCTTGGCC TCCGTCAGCC
481AGAAGGACCA CCACTGCCAC ACCTGGCCCA CCACCTGCCC CCGCAAGACC AAAGAGTGCC
541TCAAGGAGTA TGCCCATTAC TTCCTAGAGG TCACCCTGCA AGATCACATA TTCTACAAAT
601TCCAGCCTTC TGTGGTCGCT GCGGCCTGTG TTGGGGCCTC CAGGATTTGC CTGCAGCTTT
661CTCCCTACTG GACCAGAGAC CTGCAGAGGA TCTCAAGCTA TTCCCTGGAG CACCTCAGCA
721CGTGTATTGA AATCCTGCTG GTAGTGTATG ACAACGTCCT CAAGGATGCC GTAGCCGTCA
781AGAGCCAGGC CTTGGCAATG GTGCCCGGCA CACCCCCCAC CCCCACTCAA GTGCTGTTCC
841AGCCACCAGC CTACCCGGCC CTCGGCCAGC CAGCGACCAC CCTGGCACAG TTCCAGACCC
901CCGTGCAGGA CCTATGCTTG GCCTATCGGG ACTCCTTGCA GGCCCACCGT TCAGGGAGCC
961TGCTCTCGGG GAGTACAGGC TCATCCCTCC ACACCCCGTA CCAACCGCTG CAGCCCTTGG
1021ATATGTGTCC CGTGCCCGTC CCTGCATCCC TTAGCATGCA TATGGCCATT GCAGCTGAGC
1081CCAGGCACTG CCTCGCCACC ACCTATGGAA GCAGCTACTT CAGTGGGAGC CACATGTTCC
1141CCACCGGCTG CTTTGACAGA TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1201attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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