Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12574
Subject:
XR_427810.4
Aligned Length:
3619
Identities:
1095
Gaps:
2524

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCCAGAGCTGGCAAAGAAAGGCTCCAATTCCCAGCCCCCCGCCCCGCGGGGCGCGGGGGCGCCGGCAGCGCAT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCGCGAGGCCCGGCCCCCAATTCCCCCAGCGAGGGAGGGAGGCCCCCGGCGGCCGGGAGCCTGCGAGCCGCGGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGACCCGAGCGCACGCAGGGGCGCGGCGACGGCGGGGGCTAGTCGGGCTGCGGAGGCGGCCGTCGGGAGTGCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAGCGCCTCGGACGAGGGTCCAACCGCCGGCAGGCACCAGAGGGCACGGCTGGCTCGGCACTGGGAGGGGCCCG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCGCTCGCAGCCCCCCACGCCCAGAGAGGATGCGGTGCGCCCTGAGAGCCGGGTAGCCTCGGATAGCGGCGCTG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CGTACGCGATGATGGATGAGCCGTGGTGGGAAGGGCGCGTCGCCTCGGACGTCCACTGCACCCTGCGCGAGAAG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GAACTGAAGCTGCCCACCTTCCGAGCCCACTCCCCACTCCTGAAGAGCCGCCGGTTCTTCGTGGACATCCTGAC  518

Query    1  ----------------------------------------------------------------------ATGG  4
                                                                                  ||||
Sbjct  519  CCTGCTGAGCAGCCACTGCCAGCTCTGCCCTGCAGCCCGGCACCTGGCCGTCTACCTGCTGGACCACTTCATGG  592

Query    5  ATCGCTACAACGTCACCACCTCCAAGCAGCTCTACACCGTGGCCGTCTCCTGCCTCCTGCTTGCAAACGGAGTT  78
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ATCGCTACAACGTCACCACCTCCAAGCAGCTCTACACCGTGGCCGTCTCCTGCCTCCTGCTTGCAAACGGAGTT  666

Query   79  TCGCTCTTATCGCCCAGGCTGAAGTGCAGTGGCATGATCTCAGCTCATTGCAACCTCCACCTCCCAGGTTCAAG  152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TCGCTCTTATCGCCCAGGCTGAAGTGCAGTGGCATGATCTCAGCTCATTGCAACCTCCACCTCCCAGGTTCAAG  740

Query  153  CAATTCTCCTGCTTCAGCGCCCCACCCCCCACCCACACCGCCCCAAGTAGCTGAGACTACAGGTAAGTTCGAGG  226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CAATTCTCCTGCTTCAGCGCCCCACCCCCCACCCACACCGCCCCAAGTAGCTGAGACTACAGGTAAGTTCGAGG  814

Query  227  ATCGGGAAGACCACGTCCCCAAGTTGGAGCAAATAAACAGCACGAGGATCCTGAGCAGCCAGAACTTCACCCTC  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  ATCGGGAAGACCACGTCCCCAAGTTGGAGCAAATAAACAGCACGAGGATCCTGAGCAGCCAGAACTTCACCCTC  888

Query  301  ACCAAGAAGGAGCTGCTGAGCACAGAGCTGCTGCTCCTGGAGGCCTTCAGCTGGAACCTCTGCCTGCCCACGCC  374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACCAAGAAGGAGCTGCTGAGCACAGAGCTGCTGCTCCTGGAGGCCTTCAGCTGGAACCTCTGCCTGCCCACGCC  962

Query  375  TGCCCACTTCCTGGACTACTACCTCTTGGCCTCCGTCAGCCAGAAGGACCACCACTGCCACACCTGGCCCACCA  448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGCCCACTTCCTGGACTACTACCTCTTGGCCTCCGTCAGCCAGAAGGACCACCACTGCCACACCTGGCCCACCA  1036

Query  449  CCTGCCCCCGCAAGACCAAAGAGTGCCTCAAGGAGTATGCCCATTACTTCCTAGAGGTCACCCTGCAAGATCAC  522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CCTGCCCCCGCAAGACCAAAGAGTGCCTCAAGGAGTATGCCCATTACTTCCTAGAGGTCACCCTGCAAGATCAC  1110

Query  523  ATATTCTACAAATTCCAGCCTTCTGTGGTCGCTGCGGCCTGTGTTGGGGCCTCCAGGATTTGCCTGCAGCTTTC  596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  ATATTCTACAAATTCCAGCCTTCTGTGGTCGCTGCGGCCTGTGTTGGGGCCTCCAGGATTTGCCTGCAGCTTTC  1184

Query  597  TCCCTACTGGACCAGAGACCTGCAGAGGATCTCAAGCTATTCCCTGGAGCACCTCAGCACGTGTATTGAAATCC  670
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TCCCTACTGGACCAGAGACCTGCAGAGGATCTCAAGCTATTCCCTGGAGCACCTCAGCACGTGTATTGAAATCC  1258

Query  671  TGCTGGT-------------------------------------------------------------------  677
            |||||||                                                                   
Sbjct 1259  TGCTGGTCCCCCTTTTCAGATGAAAAATCCTAGGCCCCAGCGGTCAATTTGGTTGATATCAGCTAGCTAAGGAG  1332

Query  678  --------------------------------------------------------------------------  677
                                                                                      
Sbjct 1333  TGACCCCGCTGGGGATGGAGCTGGCCCAGAATTGCCTGGAAAGCAGAGATTGGGCTCATTCAGGCCCCAGGAAC  1406

Query  678  ------------------------------------------------------------------AGTGTATG  685
                                                                              ||||||||
Sbjct 1407  ACTCCAGTGCCAGGGGATGGGAAGGCATTGGTGAGCACAAGCAGGCGCCATCCTCCTGGAAGCCAGAGTGTATG  1480

Query  686  ACAACGTCCTCAAGGATGCCGTAGCCGTCAAGAGCCAGGCCTTGGCAATGGTGCCCGGCACACCCCCCACCCCC  759
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  ACAACGTCCTCAAGGATGCCGTAGCCGTCAAGAGCCAGGCCTTGGCAATGGTGCCCGGCACACCCCCCACCCCC  1554

Query  760  ACTCAAGTGCTGTTCCAGCCACCAGCCTACCCGGCCCTCGGCCAGCCAGCGACCACCCTGGCACAGTTCCAGAC  833
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  ACTCAAGTGCTGTTCCAGCCACCAGCCTACCCGGCCCTCGGCCAGCCAGCGACCACCCTGGCACAGTTCCAGAC  1628

Query  834  CCCCGTGCAGGACCTATGCTTGGCCTATCGGGACTCCTTGCAGGCCCACCGTTCAGGGAGCCTGCTCTCGGGGA  907
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  CCCCGTGCAGGACCTATGCTTGGCCTATCGGGACTCCTTGCAGGCCCACCGTTCAGGGAGCCTGCTCTCGGGGA  1702

Query  908  GTACAGGCTCATCCCTCCACACCCCGTACCAACCGCTGCAGCCCTTGGATATGTGTCCCGTGCCCGTCCCTGCA  981
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GTACAGGCTCATCCCTCCACACCCCGTACCAACCGCTGCAGCCCTTGGATATGTGTCCCGTGCCCGTCCCTGCA  1776

Query  982  TCCCTTAGCATGCATATGGCCATTGCAGCTGAGCCCAGGCACTGCCTCGCCACCACCTATGGAAGCAGCTACTT  1055
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  TCCCTTAGCATGCATATGGCCATTGCAGCTGAGCCCAGGCACTGCCTCGCCACCACCTATGGAAGCAGCTACTT  1850

Query 1056  CAGTGGGAGCCACATGTTCCCCACCGGCTGCTTTGACAGA----------------------------------  1095
            ||||||||||||||||||||||||||||||||||||||||                                  
Sbjct 1851  CAGTGGGAGCCACATGTTCCCCACCGGCTGCTTTGACAGATAGGCCACCTCCAGACCTCACGAGGAAGCCTTGG  1924

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 1925  AGATGTGGGCAGAGGAAGAGGACACTGAAGAGGAGAGCTCAGCCAAGTGAGGCAGCAGGAGGCCATCCCTGAAG  1998

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 1999  AGCCTTGGAACGTGGAGGGTCTGTGCTCCTTTTAAATAAAACTGACCCAGAGCAAAACATTCAATAACATACCT  2072

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2073  CACCCGAGAGCATTCCTCTGAGAAACGTCTGCCACGTGTGGCTAGGGTACAAAAGGATGGCTTGGTGGCCGTCC  2146

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2147  CCCCACACAGGGGCCCAGTGAATCGAGAAAGACTTGATAAGAGGCCAGGAGAGTGGGAACTGGACACAGACCAC  2220

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2221  TGATCTCAAGCATGTCCAGTTTTTAGCATTAAAGACTTTTCTATTCTTTGCTGATGGCAGCTACACCGCTGAAA  2294

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2295  AAGGAGGGGCAGCCTGGCGTGTTCTCAGGACCCCCGGAGGATCCCATATTGGGTGCTTTTCTTTCCCTGGCTCT  2368

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2369  ATGCAGAGGGGCCTGAGTTGGTGTGTATGCCTGAGTGTTTGCCTTGCGAGGCACAGTGGGTGGCTGTCTTGCCT  2442

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2443  TTGTTTTCGAACCTAAAACCATTTTCAGCCTTTTAGATATGTCATGTGCTGCTGCTTCCCGAAGTGGTCTTGCT  2516

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2517  TTCTGTTTCGTAAGATGTCTTGTTTACACACTGTATCAGGGATTTGGTGATACTTGAAAATTCCTTTGGAGAAA  2590

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2591  AAAACAAATTTAATTGCCACACTGCCTGTCCCACATGAGGGCTGTTAATTTGGAACCCAAGTTTGAACCCAACT  2664

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2665  TGTGATGGACCCGCAGGTAACCACAGAGCTTCCTTTTTGAAGGCATATGGTTGGAGAGAACCATTTTCCCAGCT  2738

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2739  CTCGGTTCCGGAAGATTCCACGTCTTGGAGGCTGTGTTCACCACTAGAACTTTAATAACTACCCAGGGAGGGAG  2812

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2813  AAGCTCGTTGAAAGGAAGACAAAGATTTAAACAGTTCCCACCTCTCTCCACCACATACTTACAGGGCATGAGTT  2886

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2887  TAACCCAGTCTAGGCTTTGAGTGTGGCTGATAGCGAAGGATAGCAATGTGGAAAATTTGCTTAGTCCCACCTGT  2960

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2961  ATTTGGGGAGTGGGATGTACATGGGCGTTTGATACCACCATTGATAGGCAAGCGACTGGTTGGATCAAAAGCCA  3034

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3035  GTATTTAGGGATCTGCAGCGAGAGGGCCCTCAGGAAGACTCTTGTAACCATGTGCAATATGTTTTTATTCTGAC  3108

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3109  TCGCAGCTTGTGCTCAGCATGTTCTTTGGTTTAGTTTGGGGTTGGGGGACACATTGTTCACCCAGCAGAACTGG  3182

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3183  GAGGTGCAAAGGACCGTGGAAGCAATTTTTGTTTTGTTTGAGGAATACCTGTCTTGGATTCCTTAGCCCCTTGC  3256

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3257  CAGTCCTGGAGACTGTGGCAGGGGCCGCCAGGAAGGCAGCTGTCTGCTGCTGAGTCAGATCGGAAGGTGGTGAA  3330

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3331  TCTTTCCAGAGCAGCTGAAAATCTCAGCATGGAGACAGTAAGAAAAGAGACGGGGTGTGGATAAGACTCTGCCA  3404

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3405  CCGTGTCACACTAGCATAGGAGGCTGCACGTTCATTTGTTGTTGTTTTTTTTTCCTTTGCCAACCTCCGTTCTA  3478

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3479  TTTATGTGCAAGCAGTTTGGATTCAAGTTCTTGTATCTGTCTGTTCTGGGACCTGGGGATTGTGAGGGTTCCCT  3552

Query 1096  -------------------------------------------------------------------  1095
                                                                               
Sbjct 3553  CACAGCCAGCACGACCCCCAGAAAGAGGCGTCCCACAATAAACACGTCACCTGCTCTTGATCTCTCA  3619

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