Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12614
- Subject:
- XM_006517463.3
- Aligned Length:
- 3021
- Identities:
- 1526
- Gaps:
- 1329
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGAGCCCCGGGCTGCCACGACTGGCGAGCTCGTGCGGGCCGCGTCCCCCTCCTTCCAGGCCCGGCTCTGGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAACCTGCAGCTGGGGGTGGGCAAGGGCAAGGGCGGCGGAGGCGGGCGCGCTGGGGGCCCCGAGCACCGCACTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGCCACTCCGACCCCGTCCCCGCCGCCCCCGGGGACCACGCAGGACGCCCTGGCCGGTGTGGGAAGTACTGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGCAGGTGGAGCGGCTTCAAGAAGCGGAAGCAAGTGCTGGACCGAGTGTTCTCCTCCTCACAGCCCAACCTGTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTGCTCCTCACCAGAGCCCCTGGAGCCAGGCGGAGCAGGCAGAGCCGAGCAAGGGTCCACGCTGCGCCGCCGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TACGCGAACATCTGCTGCCCGTGGCTAAGGGGTCCTCGACAGCCACAGGGACAGGCGGAGTGACGCCTCCTGGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGACGCTCTCCGGACTCAGCTCCTTCTTCGTCTTCCGCCTCATCTTCCCTGTCCTCTTCTCCCCAACCGCCCCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGGGGGGACCGCGTCCGTGATGAGAGTACACGGCGTGGGGGCCCTGGGGTGCACCTGTGCCACCAAAAGAGCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCTCTCTGCCCGGAACCGCGTGCCTGGAGCAGTTGCTGGAACCGGCGCCACCCCCCGCAGAACCGGCCCGGGGT 666
Query 1 -------------ATGCTAGACAGCTGC--AAGCTGA-AAAGTGC----CTGCAATTTGCCATTTATTTGTAAT 54
|.||| |||| ||| || |.||.|| ||||| |||
Sbjct 667 CCCGCCGAACCCCAGGCT------CTGCAGAAG--GACATAGAGCGCGACTGCA----GCC------------- 715
Query 55 AAGAAAATAA-TAAACACTGCTGGAACCAGTAATGCAGAAGTCCCCTTGGCTGATCCCGGAATGTACCAGCTGG 127
||||||||| | ||.|.|||||.||||||||||||.|||||.||||||||||||||||||||||||.|||
Sbjct 716 -AGAAAATAAGT----ACAGTTGGAAACAGTAATGCAGATGTCCCTTTGGCTGATCCCGGAATGTACCAGTTGG 784
Query 128 ACATTACATTAAGAAGGGGTCAAAGTTTAGCTGCTCGAGATCGAGGAGGGACGAGTGATCCATATGTGAAGTTT 201
|.||.|||.|||||||||||||||||||||||||.||.||||||||||||||.||.|||||.||||||||||||
Sbjct 785 ATATCACACTAAGAAGGGGTCAAAGTTTAGCTGCCCGTGATCGAGGAGGGACAAGCGATCCGTATGTGAAGTTT 858
Query 202 AAAATCGGAGGAAAAGAAGTTTTTAGAAGTAAGATAATACACAAGAACCTCAACCCTGTGTGGGAAGAAAAAGC 275
|||||.|||.|||||||||||||||||||.||.||.||.|||||||||||.||.|||||||||||.|||||.||
Sbjct 859 AAAATTGGAAGAAAAGAAGTTTTTAGAAGCAAAATTATCCACAAGAACCTAAATCCTGTGTGGGAGGAAAAGGC 932
Query 276 TTGTATTCTGGTTGATCATCTTAGGGAGCCATTGTATATAAAGGTATTTGACTATGATTTTGGACTACAGGATG 349
|||..|.||..||||.||||||||.||||||.|.|||||.||||||||||||||||||||||||||.||.||||
Sbjct 933 TTGCGTGCTCATTGACCATCTTAGAGAGCCACTATATATCAAGGTATTTGACTATGATTTTGGACTGCAAGATG 1006
Query 350 ACTTTATGGGCTCAGCCTTTCTGGATCTGACACAATTGGAGTTAAACAGGCCCACAGATGTGACCCTTACTCTG 423
||||||||||||||||||||||.|||||.||.||.|||||||||||||||.||||||||||.|||||.||||||
Sbjct 1007 ACTTTATGGGCTCAGCCTTTCTTGATCTCACTCAGTTGGAGTTAAACAGGTCCACAGATGTTACCCTAACTCTG 1080
Query 424 AAAGATCCTCATTATCCTGACCATGATCTTGGAATCATTTTGCTCTCAGTCATCCTTACCCCTAAAGAAGGAGA 497
|||||.||.|||||||||||||||||.|||||||||||||||||.||||||||||||||.|||||.|||||.||
Sbjct 1081 AAAGACCCCCATTATCCTGACCATGACCTTGGAATCATTTTGCTGTCAGTCATCCTTACGCCTAAGGAAGGTGA 1154
Query 498 GTCCAGGGATGTGACAATGCTAATGAGGAAGAGTTGGAAAAGATCAAGTAAGGAACTTTCAGAAAATGAAGTGG 571
...||||||||||||||||||||||||||||||||||||||||||.|||||||||||.|||||||||||||||.
Sbjct 1155 ACACAGGGATGTGACAATGCTAATGAGGAAGAGTTGGAAAAGATCCAGTAAGGAACTCTCAGAAAATGAAGTGT 1228
Query 572 TTGGATCTTATTTCTCTGTGAAGTCTCTCTTTTGGAGGACGTGCGGCAGGCCAGCTCTTCCTGTCCTGGGCTTC 645
||||||.|.|.|||||||||.|||||.|||||||||||
Sbjct 1229 TTGGATTTCACTTCTCTGTGCAGTCTTTCTTTTGGAGG------------------------------------ 1266
Query 646 TGCAGAGCAGAGCTTCAGAATCCTTATTGCAAAAATGTACAATTTCAGACCCAAAGTTTACGCCTATCAGACCT 719
|||||||||||||||||||||||.||.||||.
Sbjct 1267 ------------------------------------------TTTCAGACCCAAAGTTTACGCCTGTCCGACCA 1298
Query 720 ACACAGAAAATCGCATCTTTGGAGAGGAATAGTCAGCATCACCTTGATTGAAGGGAGAGACCTCAAGGCCATGG 793
.|||||.|||||.||.|||||||||||||||||||||||||||||||||||.||..||||.|||||.||.||||
Sbjct 1299 GCACAGGAAATCACACCTTTGGAGAGGAATAGTCAGCATCACCTTGATTGAGGGTCGAGATCTCAAAGCAATGG 1372
Query 794 ATTCCAACGGGTTGAGCGATCCCTACGTGAAGTTCCGGCTTGGGCATCAGAAGTACAAGAGCAAGATTATGCCA 867
|||||||.||||||||.|||||.||.|||||||||||||||||.|||||||||||||||||||||||||||||.
Sbjct 1373 ATTCCAATGGGTTGAGTGATCCATATGTGAAGTTCCGGCTTGGCCATCAGAAGTACAAGAGCAAGATTATGCCC 1446
Query 868 AAAACGTTGAATCCTCAGTGGAGGGAACAATTTGATTTTCACCTTTATGAAGAAAGAGGAGGAGTCATTGATAT 941
|||||.|||||.||||||||||||||.|||||||||||.||.||.||||||||||||||.||..||||.||.||
Sbjct 1447 AAAACTTTGAACCCTCAGTGGAGGGAGCAATTTGATTTCCATCTCTATGAAGAAAGAGGTGGGATCATGGACAT 1520
Query 942 CACTGCATGGGACAAAGATGCTGGGAAAAGGGATGATTTCATTGGCAGGTGCCAGGTCGACCTGTCAGCCCTCA 1015
||||||.|||||||||||||||||||||||.|||||.||.|||||.|||||||||||.||||||||..||||||
Sbjct 1521 CACTGCCTGGGACAAAGATGCTGGGAAAAGAGATGACTTTATTGGAAGGTGCCAGGTTGACCTGTCTTCCCTCA 1594
Query 1016 GTAGGGAACAGACGCACAAGCTGGAGTTGCAGCTGGAAGAGGGTGAGGGACACCTGGTGCTGCTGGTCACTCTG 1089
|||||||.||.||.||||||||||||||.||.|||||||||||||||||.||||||||.|||||.|||||||||
Sbjct 1595 GTAGGGAGCAAACTCACAAGCTGGAGTTACATCTGGAAGAGGGTGAGGGCCACCTGGTTCTGCTTGTCACTCTG 1668
Query 1090 ACAGCATCAGCCACAGTCAGCATCTCTGACCTGTCTGTCAACTCCCTGGAGGACCAGAAGGAACGAGAGGAGAT 1163
|||||.||.|||||||||.|.|||||||||||.||||||||.|||.||||||||||||||||.||.||.|||||
Sbjct 1669 ACAGCCTCGGCCACAGTCTGTATCTCTGACCTCTCTGTCAATTCCATGGAGGACCAGAAGGAGCGGGAAGAGAT 1742
Query 1164 ATTAAAGAAATATAGCCCATTGAGGATATTTCACAACCTGAAAGATGTGGGATTTCTCCAGGTGAAAGTCATCA 1237
||||||||.||||||||||.|||||||||||.|||||||.|||||.||||||||||||||||||||||||||||
Sbjct 1743 ATTAAAGAGATATAGCCCACTGAGGATATTTAACAACCTAAAAGACGTGGGATTTCTCCAGGTGAAAGTCATCA 1816
Query 1238 GAGCGGAAGGGTTAATGGCTGCCGACGTCACTGGAAAAAGTGACCCATTTTGTGTGGTAGAACTGAACAACGAT 1311
||||.|||||.||.||||||||.||.|||||.||.||||||||.|||||||||||.||||||||||||||.|||
Sbjct 1817 GAGCAGAAGGTTTGATGGCTGCAGATGTCACAGGTAAAAGTGATCCATTTTGTGTAGTAGAACTGAACAATGAT 1890
Query 1312 AGACTGCTAACACATACTGTCTACAAAAATCTCAATCCTGAGTGGAATAAAGTCTTCACGTTCAACATTAAAGA 1385
||.|||||||||||.|||||.||||||||.|||||||||||||||||.|||||.|||||.||.|||||||||||
Sbjct 1891 AGGCTGCTAACACACACTGTGTACAAAAACCTCAATCCTGAGTGGAACAAAGTGTTCACATTTAACATTAAAGA 1964
Query 1386 TATCCATTCAGTTCTTGAAGTGACAGTTTATGATGAAGATCGGGATCGAAGTGCTGACTTTCTGGGCAAAGTTG 1459
.||.||||||||||||||||||||||||||||||||||||||.||.||.|||||.|||||||||||||.|||.|
Sbjct 1965 CATTCATTCAGTTCTTGAAGTGACAGTTTATGATGAAGATCGTGACCGGAGTGCCGACTTTCTGGGCAGAGTCG 2038
Query 1460 CTATACCATTGCTGTCTATTCAAAATGGTGAACAGAAAGCCTACGTCTTGAAAAACAAGCAGCTGACAGGGCCA 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2039 CTATACCATTGCTGTCTATTCAAAATGGTGAACAGAAAGCCTACGTCTTGAAAAACAAGCAGCTGACAGGGCCA 2112
Query 1534 ACAAAGGGGGTCATCTATCTTGAAATAGATGTGATTTTTAATGCTGTGAAAGCCAGCTTACGAACATTAATACC 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2113 ACAAAGGGGGTCATCTATCTTGAAATAGATGTGATTTTTAATGCTGTGAAAGCCAGCTTACGAACATTAATACC 2186
Query 1608 CAAAGAACAGAAGTACATTGAAGAGGAAAACAGACTCTCTAAACAGCTGCTACTAAGAAACTTTATCAGAATGA 1681
||||||||.||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||..|
Sbjct 2187 CAAAGAACGGAAGTACATTGAAGAGGAAAACAGACTCTCTAAACAGCTGCTTCTAAGAAACTTTATCAGAACAA 2260
Query 1682 AACGTTGTGTCATGGTGCTGGTAAATGCTGCATACTACGTTAATAGTTGCTTTGATTGGGATTCACCCCCAAGG 1755
|||||||||||||.|||||.|||||.||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 2261 AACGTTGTGTCATAGTGCTTGTAAACGCTGCATACTACGTTAATAGTTGCTTTGATTGGGATTCGCCCCCAAGG 2334
Query 1756 AGTCTCGCTGCTTTTGTG----------GCCTTGTATGGGACTTT--------CAT------------------ 1793
|||||.|||||||||||| .|.||||.|||.||||| |||
Sbjct 2335 AGTCTTGCTGCTTTTGTGCTCTTTCTCCTCATTGTCTGGAACTTTGAGCTCTACATGATACCACTGCTGCTGTT 2408
Query 1794 -----TAATGTC-------------------------------------------------------------- 1800
||.||.|
Sbjct 2409 GTTACTATTGACATGGAACTACTTCCTGATAATATCCGGGAAAGACAACAGGCAACGGGACACAGTAGTGGAGG 2482
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2483 ACATGCTGGAGGACGAAGAGGAAGAAGATGACAGAGATGACAAGGATGGTGAAAAGAAAGGATTTATAAATAAA 2556
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2557 ATCTATGCGATCCAGGAAGTCTGTGTCAGTGTGCAGAACATCCTAGATGAAGTGGCTTCCCTTGGTGAAAGGAT 2630
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2631 AAAGAATACTTTCAACTGGACTGTCCCCTTCTTAAGCTGGCTGGCCATTGTAGCCCTGTGTGTGTTCACCGCCA 2704
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2705 TTCTGTACTTCATCCCACTGAGATACATTGTTCTTGTTTGGGGAATTAATAAATTTACAAAAAAGCTTCGGAGT 2778
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2779 CCATATGCAATTGATAACAATGAACTACTTGACTTCCTTTCCAGAGTTCCTTCAGATGTACAAGTGGTGCAGTA 2852
Query 1801 ------------------------------------------------------------- 1800
Sbjct 2853 CCAAGAACTGAAACCAGATCATTCTCATAGCCCATACAAAAGGAAGAAAAACAACCTTGGC 2913
