Construct: ORF ccsbBroadEn_12614

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013682.1_s300c1, BRDN0000456657
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MCTP1 (79772)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79772 MCTP1 multiple C2 and transmembra... XM_017009865.2 82.6% 81.7% (many diffs)
2 human 79772 MCTP1 multiple C2 and transmembra... XM_017009856.1 76.9% 75.8% (many diffs)
3 human 79772 MCTP1 multiple C2 and transmembra... NM_001002796.3 76.8% 75.7% (many diffs)
4 human 79772 MCTP1 multiple C2 and transmembra... XM_017009859.1 75.4% 74.7% (many diffs)
5 human 79772 MCTP1 multiple C2 and transmembra... XM_005272082.5 75.3% 74.2% (many diffs)
6 human 79772 MCTP1 multiple C2 and transmembra... NM_001297777.1 74.3% 73.7% (many diffs)
7 human 79772 MCTP1 multiple C2 and transmembra... XM_017009860.1 73.4% 72.3% (many diffs)
8 human 79772 MCTP1 multiple C2 and transmembra... XM_011543649.3 71.9% 70.8% (many diffs)
9 human 79772 MCTP1 multiple C2 and transmembra... XM_005272090.4 70.9% 69.8% (many diffs)
10 human 79772 MCTP1 multiple C2 and transmembra... XM_017009855.2 70.2% 69.1% (many diffs)
11 human 79772 MCTP1 multiple C2 and transmembra... XM_017009863.1 69.2% 68.1% (many diffs)
12 human 79772 MCTP1 multiple C2 and transmembra... XM_017009857.1 68.5% 67.5% (many diffs)
13 human 79772 MCTP1 multiple C2 and transmembra... XM_006714692.4 67.9% 66.8% (many diffs)
14 human 79772 MCTP1 multiple C2 and transmembra... XM_017009858.2 66.9% 65.8% (many diffs)
15 human 79772 MCTP1 multiple C2 and transmembra... XM_017009861.2 66% 64.9% (many diffs)
16 human 79772 MCTP1 multiple C2 and transmembra... XM_017009864.2 66% 64.9% (many diffs)
17 human 79772 MCTP1 multiple C2 and transmembra... XM_017009862.2 64.3% 63.2% (many diffs)
18 human 79772 MCTP1 multiple C2 and transmembra... XM_011543650.2 61.6% 60.6% (many diffs)
19 human 79772 MCTP1 multiple C2 and transmembra... NM_024717.5 58.2% 57.2% (many diffs)
20 human 79772 MCTP1 multiple C2 and transmembra... XR_001742266.1 38% (many diffs)
21 human 79772 MCTP1 multiple C2 and transmembra... XR_001742267.1 37.1% (many diffs)
22 human 79772 MCTP1 multiple C2 and transmembra... XR_001742264.2 33.3% (many diffs)
23 mouse 78771 Mctp1 multiple C2 domains, transm... XM_017315644.1 67.6% 69.9% (many diffs)
24 mouse 78771 Mctp1 multiple C2 domains, transm... XM_006517469.3 66.1% 68% (many diffs)
25 mouse 78771 Mctp1 multiple C2 domains, transm... XM_006517468.3 64.8% 66.6% (many diffs)
26 mouse 78771 Mctp1 multiple C2 domains, transm... XM_006517471.3 62.2% 64.4% (many diffs)
27 mouse 78771 Mctp1 multiple C2 domains, transm... XM_006517470.3 60.8% 63.2% (many diffs)
28 mouse 78771 Mctp1 multiple C2 domains, transm... NM_030174.2 59.8% 62.6% (many diffs)
29 mouse 78771 Mctp1 multiple C2 domains, transm... XM_006517466.3 51.9% 52.6% (many diffs)
30 mouse 78771 Mctp1 multiple C2 domains, transm... XM_006517463.3 50.5% 51.2% (many diffs)
31 mouse 78771 Mctp1 multiple C2 domains, transm... XM_006517462.3 49.7% 50.4% (many diffs)
32 mouse 78771 Mctp1 multiple C2 domains, transm... XM_017315643.1 49.6% 50.6% (many diffs)
33 mouse 78771 Mctp1 multiple C2 domains, transm... XM_017315642.1 48.7% 49.8% (many diffs)
34 mouse 78771 Mctp1 multiple C2 domains, transm... XM_006517464.3 47.9% 49% (many diffs)
35 mouse 78771 Mctp1 multiple C2 domains, transm... XM_006517467.3 47.5% 48.5% (many diffs)
36 mouse 78771 Mctp1 multiple C2 domains, transm... XM_006517472.3 42.2% 42.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1866
ORF length:
1800
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT AGACAGCTGC AAGCTGAAAA GTGCCTGCAA TTTGCCATTT ATTTGTAATA
121AGAAAATAAT AAACACTGCT GGAACCAGTA ATGCAGAAGT CCCCTTGGCT GATCCCGGAA
181TGTACCAGCT GGACATTACA TTAAGAAGGG GTCAAAGTTT AGCTGCTCGA GATCGAGGAG
241GGACGAGTGA TCCATATGTG AAGTTTAAAA TCGGAGGAAA AGAAGTTTTT AGAAGTAAGA
301TAATACACAA GAACCTCAAC CCTGTGTGGG AAGAAAAAGC TTGTATTCTG GTTGATCATC
361TTAGGGAGCC ATTGTATATA AAGGTATTTG ACTATGATTT TGGACTACAG GATGACTTTA
421TGGGCTCAGC CTTTCTGGAT CTGACACAAT TGGAGTTAAA CAGGCCCACA GATGTGACCC
481TTACTCTGAA AGATCCTCAT TATCCTGACC ATGATCTTGG AATCATTTTG CTCTCAGTCA
541TCCTTACCCC TAAAGAAGGA GAGTCCAGGG ATGTGACAAT GCTAATGAGG AAGAGTTGGA
601AAAGATCAAG TAAGGAACTT TCAGAAAATG AAGTGGTTGG ATCTTATTTC TCTGTGAAGT
661CTCTCTTTTG GAGGACGTGC GGCAGGCCAG CTCTTCCTGT CCTGGGCTTC TGCAGAGCAG
721AGCTTCAGAA TCCTTATTGC AAAAATGTAC AATTTCAGAC CCAAAGTTTA CGCCTATCAG
781ACCTACACAG AAAATCGCAT CTTTGGAGAG GAATAGTCAG CATCACCTTG ATTGAAGGGA
841GAGACCTCAA GGCCATGGAT TCCAACGGGT TGAGCGATCC CTACGTGAAG TTCCGGCTTG
901GGCATCAGAA GTACAAGAGC AAGATTATGC CAAAAACGTT GAATCCTCAG TGGAGGGAAC
961AATTTGATTT TCACCTTTAT GAAGAAAGAG GAGGAGTCAT TGATATCACT GCATGGGACA
1021AAGATGCTGG GAAAAGGGAT GATTTCATTG GCAGGTGCCA GGTCGACCTG TCAGCCCTCA
1081GTAGGGAACA GACGCACAAG CTGGAGTTGC AGCTGGAAGA GGGTGAGGGA CACCTGGTGC
1141TGCTGGTCAC TCTGACAGCA TCAGCCACAG TCAGCATCTC TGACCTGTCT GTCAACTCCC
1201TGGAGGACCA GAAGGAACGA GAGGAGATAT TAAAGAAATA TAGCCCATTG AGGATATTTC
1261ACAACCTGAA AGATGTGGGA TTTCTCCAGG TGAAAGTCAT CAGAGCGGAA GGGTTAATGG
1321CTGCCGACGT CACTGGAAAA AGTGACCCAT TTTGTGTGGT AGAACTGAAC AACGATAGAC
1381TGCTAACACA TACTGTCTAC AAAAATCTCA ATCCTGAGTG GAATAAAGTC TTCACGTTCA
1441ACATTAAAGA TATCCATTCA GTTCTTGAAG TGACAGTTTA TGATGAAGAT CGGGATCGAA
1501GTGCTGACTT TCTGGGCAAA GTTGCTATAC CATTGCTGTC TATTCAAAAT GGTGAACAGA
1561AAGCCTACGT CTTGAAAAAC AAGCAGCTGA CAGGGCCAAC AAAGGGGGTC ATCTATCTTG
1621AAATAGATGT GATTTTTAAT GCTGTGAAAG CCAGCTTACG AACATTAATA CCCAAAGAAC
1681AGAAGTACAT TGAAGAGGAA AACAGACTCT CTAAACAGCT GCTACTAAGA AACTTTATCA
1741GAATGAAACG TTGTGTCATG GTGCTGGTAA ATGCTGCATA CTACGTTAAT AGTTGCTTTG
1801ATTGGGATTC ACCCCCAAGG AGTCTCGCTG CTTTTGTGGC CTTGTATGGG ACTTTCATTA
1861ATGTCTGCCC AACTTTCTTG TACAAAGTTG Gcattataag aaagcattgc ttatcaattt
1921gttgcaacga ac

Download FASTA (ORF) (Full)

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