Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12717
- Subject:
- XM_017317780.1
- Aligned Length:
- 3587
- Identities:
- 1393
- Gaps:
- 2002
Alignment
Query 1 ATGGGGCCACGAAAGAAAAGTGTGAAAACATGTATCATGAATAATGAAATTCCAGAAGAAATGACAGCAGATGA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 AACAAAGGACTATATGAATCAACTTTCACATGAAGTACTTTGCCATATTTTTAGGTACCTCCCTCTGCAGGATA 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TCATGTGTATGGAATGTCTTTCCCGGAAGCTAAAGGAAGCAGTGACCCTATATCTGCGAGTTGTGAGAGTTGTA 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 GATCTCTGTGCAGGGCGGTGGTGGGAATACATGCCAAGTGGCTTTACAGATGCCAGTTTTCTAACACTATTAAA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 GAAGATGCCAGATGTTGAACAGCTATATGGCCTTCACCCTCGATACCTTGAGAGGCGAAGAGTAAGGGGCCATG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 AGGCTTTTAGCATTCCAGGAGTCCTAGAAGCTTTGCAGGCATGCCCAAACTTAGTGGGTGTGGAAACTTCTCAT 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 TTGGAGTTGGTAGAATCCATTTGGACATATATGCCCCATGTTCATATTTTGGGGAAATTTCGTAATCGTAATGG 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 AGCTTTTCCAATTCCTCCTGAAAATAAACTGAAAATTCCTATAGGAGCCAAAATTCAAACTTTACATTTAGTTG 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 GGGTGAATGTTCCTGAAATTCCTTGTATCCCAATGCTAAGGCACCTTTATATGAAGTGGGTAAGACTCACTAAA 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 CCACAGCCATTTAAAGACTTCCTTTGTATCAGCTTAAGAACTTTCGTCATGAGGAACTGTGCAGGACCCACAAA 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 TTCCTTGAAATATGTCCCTTTAGTAACAGGCTTAGCCTCTGCCCGAAACTTGGAACACTTAGAAATGGTTCGAG 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 TTCCTTTCCTTGGAGGTCTTATCCAACATGTTGTTGAAGACAGTTGGAGATCAGGTGGTTTTAGAAATTTGCAC 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 ACTATTGTTCTGGGAGCTTGCAAAAATGCTCTTGAAGTAGATCTTGGTTACCTCATCATTACTGCTGCCCGTAG 962
Sbjct 1 -------------------------------------------------------------------------- 0
Query 963 GTTACATGAAGTTCGGATCCAGCCTTCCCTAACCAAAGATGGTGTCTTTTCTGCCCTAAAGATGGCAGAGTTGG 1036
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1037 AGTTTCCCCAGTTTGAAACCCTTCATCTAGGATATGTAGATGAGTTTTTGCTACAGAGCAGAATGGCTAATGCG 1110
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1111 GATCTGGTGAAGTATGGTTTGGCTGATGTGGTAGAAAATCCTGGTATCATCACTGATATAGGGATGAAAGCAGT 1184
|||||||
Sbjct 1 ---------------------------------------------------------------ATGAAAG---- 7
Query 1185 CAATGAAGTTTTTTCCTGTATCAAATATCTGGCAATTTACAATTGCCCTCATCTACACAACCCATACAATTGGA 1258
||| ||||.||| ||
Sbjct 8 ---------------------------TCT----------------CCTCTTCT-CA----------------- 20
Query 1259 TCTCAGACCACTCAAGATGGACTCGATTGGTTGATATCAACCTAGTACGGTGCCATGCTTTGAAGCTGGACTCT 1332
|||||||||.||.||||..|||.||||||||||||||||.||.|||||||||||||||||||||||.|||
Sbjct 21 ----AGACCACTCGAGGTGGATGCGACTGGTTGATATCAACCTCGTGCGGTGCCATGCTTTGAAGCTGGATTCT 90
Query 1333 TTTGGCCAGTTTATTGAATTATTACCCAGCCTAGAGTTTATTTCACTGGATCAGATGTTTCGTGAACCACCCAA 1406
||||||||||||.||||||||||.||||||||.||.||||||||.|||||.||||||||.|||||.||||||||
Sbjct 91 TTTGGCCAGTTTGTTGAATTATTGCCCAGCCTGGAATTTATTTCTCTGGACCAGATGTTCCGTGAGCCACCCAA 164
Query 1407 GGGTTGTGCTCGAGTTGGTCTGAGTGCAGGCACAGGAATTGGTGTTTCATCAGCTCTTGTTAGCAACCAGAACT 1480
|||.||||||||||||||||||||||||||.||.||||||||.|||||.|||||.|||||.|||||||||||.|
Sbjct 165 GGGCTGTGCTCGAGTTGGTCTGAGTGCAGGAACTGGAATTGGGGTTTCCTCAGCGCTTGTCAGCAACCAGAATT 238
Query 1481 CCAACAATGAC---GATAATAATGC-CCAGAATAACAATGCCAACATCCACGACAACAATCACCATCATCCAGA 1550
||||||||||| ||.|||||||| ||| ||||||||.||||||.||||.||.||||||||||||||.|||||
Sbjct 239 CCAACAATGACAATGACAATAATGCTCCA-AATAACAACGCCAACCTCCATGATAACAATCACCATCACCCAGA 311
Query 1551 TGACTCAGACGAGGAGAATGACTTTCGGCAAGATCTGCAGCCAGGAGA-GCAGCAGTTTGCAGCTGACGCATTA 1623
|||.||.||.||.||.|||||||||||.|.|||.||.||..||||||| ||| ||.||||||||.||.||.||.
Sbjct 312 TGATTCGGATGACGACAATGACTTTCGTCCAGACCTACAAGCAGGAGAGGCA-CAATTTGCAGCCGATGCGTTG 384
Query 1624 AATGAGATGGAAGACATCGTCCAAGAAGATGGAGAGGTGGTGGCCGAGAGTGGAAATAATACTCCAGCTCACAG 1697
|||||||||||||||||.|||||.|||||||||||..||||.|||||||||||||||..||..||||||||||.
Sbjct 385 AATGAGATGGAAGACATGGTCCAGGAAGATGGAGAACTGGTAGCCGAGAGTGGAAATGGTATGCCAGCTCACAA 458
Query 1698 CCAGGCAATTATTCCTGTGGATGTTGATGAGGAACAAGCAGGACCCAGTGGTCTTCAGCGTGTAGTAAAACCAA 1771
.|.||.|.||.||||||||||||.|||||||||||||||||||||.||||||||.||.||.||.||||||||.|
Sbjct 459 TCGGGAAGTTCTTCCTGTGGATGCTGATGAGGAACAAGCAGGACCTAGTGGTCTACAACGCGTGGTAAAACCTA 532
Query 1772 CCTCAATTACTGTTCATGATTCAGAGAGTGATGATGAAGAAGATAGTCTAGAACTCCAAGAAGTCTGGATTCCT 1845
|..|||||.|||.|||.|||||||||||.||||||||||||||||||.||||||||||||||||||||..||||
Sbjct 533 CACCAATTGCTGATCACGATTCAGAGAGCGATGATGAAGAAGATAGTTTAGAACTCCAAGAAGTCTGGGCTCCT 606
Query 1846 AAGAACGGTACTCGGCGTTACTCTGAACGTGAAGAAAAAACTGGAGAGTCAGTGCAGTCCAGAGAA-------- 1911
|||||.||.||.|||||||||||.||.||.||||||||.||||||||.||||..||||||||.|||
Sbjct 607 AAGAATGGCACCCGGCGTTACTCAGAGCGGGAAGAAAAGACTGGAGACTCAGGACAGTCCAGGGAAACGGCAGC 680
Query 1912 --------------------------TT---------------------------------------------- 1913
||
Sbjct 681 AGTAAGTGGGAAAGGCAAGACTCCACTTCGAAAGAGGTGCAACAACTCCCACCAGACGGGCCAGGCGAAGCCGT 754
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 755 TTCCCCTGGAGGAGAGCAGCTGTGAGAAAGGCTGTCAGGTGACCAGTGAGCAGATCAAAGCCGATATGAAAGCA 828
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 829 GCTAGGGATGTTTCTGAAAAGAAAAAATCCAAGGATGTCTATCCCAGCTGCAGCAGCAGCAGCAGCAGCACAGC 902
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 903 CGCCAGCACAGCGGGAAACGCCAGCTCACCCAGCACTGCTTCCCAGAGCCCGGACTTTGCAAGGACGGTGACCA 976
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 977 GCAGCGGCTCTTCCGAGCCGAGCCCTCCAGAAGTAGATGTATCCAGGCAGTGTGTCTGCTCCCCTGGTGGGTCA 1050
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 1051 GAGGACTCTGAGGCCATGGAGGAGGGAGATGCAGAGAGCTCTGTCTGCCCCAGATGCTGCTGTCTCAGGCCCCA 1124
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 1125 GGAGTCTCAAAGGAGAACTGGCAGGTGTTCTGATGAGGAGCGTCCTTCAACCAGCCGAGCCTGTGTTGTGAATG 1198
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 1199 GCGCGGATGGTACGAGATCCGCCTTTTCCTTTAGGACTCTGCCACAAGGGGGGTCTTCAGGCCCAGCACATGAT 1272
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 1273 GAGAGGACTAATGGGAGTGGCTGTGGGGCTACAGGTGAGGACAGGAGGGGGAGCTCCCAGCCTGAGAGTTGTGA 1346
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 1347 CGTGCAGTCTAATGAAGACTATCCTCGGAGGCCCCTAACCAGGGCCAGGAGCAGACTGTCCCATGTACCGCTGA 1420
Query 1914 -------GTCAGAAGTAGCCAAAACAAAGCCACGTCACGCCATGAAACGGAAGCGGACAGCAGATAAATCCACT 1980
|||||||||.|||||||||||||||.|.||.|||||||||||.|||||.||.||||||||.||.||.
Sbjct 1421 TATCTGAGTCAGAAGTTGCCAAAACAAAGCCATGCCATGCCATGAAACGAAAGCGAACTGCAGATAAGTCTACC 1494
Query 1981 AGTACAAGTGATCCTGTGATCGAGGATGACCATGTGCAGGTTCTTGTATTAAAATCCAAGAATCTTGTTGGAGT 2054
||.||.|||||.||||||||.||.||||||||.||.|||||||||||||||||||||||.||||||||||||||
Sbjct 1495 AGCACCAGTGACCCTGTGATTGAAGATGACCACGTACAGGTTCTTGTATTAAAATCCAAAAATCTTGTTGGAGT 1568
Query 2055 CACTATGACCAATTGTGGAATCACAGATCTAGTGCTAAAAGACTGTCCAAAGATGATGTTCATCCATGCTACCA 2128
|||.|||||||||||||||||||||||||||||.||.||||||||.||.|||||||||||||||||||||||||
Sbjct 1569 CACAATGACCAATTGTGGAATCACAGATCTAGTACTGAAAGACTGCCCCAAGATGATGTTCATCCATGCTACCA 1642
Query 2129 GGTGCAGGGTACTAAAACATTTAAAGGTAGAAAATGCACCAATTGTAAACCGATTTGACTATGCACAGTGCAAG 2202
|||||||||||||.||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 GGTGCAGGGTACTGAAGCATTTAAAGGTAGAAAATGCACCAATTGTAAACCGATTTGACTATGCACAGTGCAAG 1716
Query 2203 AAACTGAACATGGATCAGGTACTAGACCAGATACTAAGAATGCCACCCGAGAGAAACCGCATCATATACCTACG 2276
|||||.||.|||||.||||||||||||||.|||||.||.|||||.||.|||||.|||||.|||||.|||||.||
Sbjct 1717 AAACTAAATATGGACCAGGTACTAGACCAAATACTGAGGATGCCTCCGGAGAGGAACCGGATCATCTACCTGCG 1790
Query 2277 CCCAATGCAGCAGGTGGACACTCTAACTTTGGAGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTA 2350
|||||||||||||||.|||||.||||||.|||||||||||||.||.||.||.||||||||||||||||||||.|
Sbjct 1791 CCCAATGCAGCAGGTAGACACACTAACTCTGGAGCAGAAGCTCTTCAGCGGGCCCTACCCCTATCACATCTGCA 1864
Query 2351 TTATCCATGAATTCAGTAACCCTCCCAATGTCCGGAATAAGGTGCGCATTCGCAGCTGGATGGACACTATAGCA 2424
|.|||||.||.|||||.||.||||||||.||.|||||.|||||||||||.||||..|||||||||||.|||||.
Sbjct 1865 TCATCCACGAGTTCAGCAATCCTCCCAACGTGCGGAACAAGGTGCGCATCCGCAATTGGATGGACACGATAGCC 1938
Query 2425 AACATCAATCAAGAGCTCATTAAATATGAATTCTTCCCTGAAGCCACTCGAAGTGAAGAAGACTTAAAGAAATA 2498
||||||||||||||||||||||||||.||||||||||..|||||||||||.|.||||||.||.||||||||.||
Sbjct 1939 AACATCAATCAAGAGCTCATTAAATACGAATTCTTCCTGGAAGCCACTCGGACTGAAGAGGATTTAAAGAAGTA 2012
Query 2499 CCCCAAGTACCCCTGGGGGAGAGAAATCTATACTTTAGAAGGTGTTGTGGATGGAGCTCCATATTCCATGATTT 2572
|||.|||||.||||||||||||||||||||.||||||||.||||||||.||||||||.||.|||||||||||||
Sbjct 2013 CCCTAAGTATCCCTGGGGGAGAGAAATCTACACTTTAGAGGGTGTTGTAGATGGAGCGCCGTATTCCATGATTT 2086
Query 2573 CTGACTTCCCTTGGCTGAGGTCATTACGAGCTGCAGAGCCCAACAGCTTCGCTCGATACGACTTTGAAGACGAT 2646
|.|||||||||||||||||||||.|.||..|.|||||||||||||||||.||..||||.||.||||||||.|||
Sbjct 2087 CCGACTTCCCTTGGCTGAGGTCACTGCGGACCGCAGAGCCCAACAGCTTTGCCAGATATGATTTTGAAGATGAT 2160
Query 2647 GAAGAAAGCACTATCTATGCTCCTAGAAGGAAAGGACAGCTGTCTGCAGACATCTGTATGGAAACAATAGGAGA 2720
|||||.|||||.||||||||||||.||||.|||||.|||.|||||||||||||.||||||||.|||||||||||
Sbjct 2161 GAAGAGAGCACCATCTATGCTCCTCGAAGAAAAGGGCAGTTGTCTGCAGACATTTGTATGGAGACAATAGGAGA 2234
Query 2721 GGAAATTTCAGAGATGCGTCAGATGAAGAAGGGTGTATTTCAGCGAGTAGTGGCAATTTTTATCCACTATTGTG 2794
|||.||.|||||||||||.||||||||||.|||..||||||||||||||||.||.||||||||||||||.||||
Sbjct 2235 GGAGATCTCAGAGATGCGCCAGATGAAGAGGGGCATATTTCAGCGAGTAGTAGCGATTTTTATCCACTACTGTG 2308
Query 2795 ATGTCAATGGAGAGCCAGTTGAAGATGACTACATT 2829
|||||||||||||||||||||||||.|||||||||
Sbjct 2309 ATGTCAATGGAGAGCCAGTTGAAGACGACTACATT 2343
