Construct: ORF ccsbBroadEn_12717

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001757.1_s300c1, BRDN0000397225
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FBXO38 (81545)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 81545 FBXO38 F-box protein 38 NM_001271723.1 100% 100%
2 human 81545 FBXO38 F-box protein 38 NM_030793.5 84.7% 84.7% 1918_2427del
3 human 81545 FBXO38 F-box protein 38 XM_006714797.2 82.2% 82.2% 1916_2524del
4 human 81545 FBXO38 F-box protein 38 NM_205836.3 79.3% 79.3% 1914_2648del
5 human 81545 FBXO38 F-box protein 38 XM_024446223.1 79.3% 79.3% 1914_2648del
6 human 81545 FBXO38 F-box protein 38 XR_001742284.1 62.5% (many diffs)
7 human 81545 FBXO38 F-box protein 38 XM_017009901.2 51.8% 51.8% 0_1ins1098;820_1329del
8 human 81545 FBXO38 F-box protein 38 XM_017009899.1 48.5% 48.5% 0_1ins1098;816_1550del
9 human 81545 FBXO38 F-box protein 38 XM_017009902.2 48% 47.4% (many diffs)
10 human 81545 FBXO38 F-box protein 38 XM_011537684.3 44.9% 44.4% (many diffs)
11 human 81545 FBXO38 F-box protein 38 XM_017009900.2 44.9% 44.4% (many diffs)
12 mouse 107035 Fbxo38 F-box protein 38 XM_006525502.3 74.3% 80.3% (many diffs)
13 mouse 107035 Fbxo38 F-box protein 38 XM_006525501.3 74.3% 80.2% (many diffs)
14 mouse 107035 Fbxo38 F-box protein 38 NM_134136.3 69.7% 75.3% (many diffs)
15 mouse 107035 Fbxo38 F-box protein 38 XM_006525497.3 69.6% 75.3% (many diffs)
16 mouse 107035 Fbxo38 F-box protein 38 XM_006525498.1 69.6% 75.3% (many diffs)
17 mouse 107035 Fbxo38 F-box protein 38 XM_006525499.3 69.6% 75.3% (many diffs)
18 mouse 107035 Fbxo38 F-box protein 38 XM_017317781.1 38.8% 40.9% (many diffs)
19 mouse 107035 Fbxo38 F-box protein 38 XM_017317780.1 38.8% 40.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2895
ORF length:
2829
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GCCACGAAAG AAAAGTGTGA AAACATGTAT CATGAATAAT GAAATTCCAG
121AAGAAATGAC AGCAGATGAA ACAAAGGACT ATATGAATCA ACTTTCACAT GAAGTACTTT
181GCCATATTTT TAGGTACCTC CCTCTGCAGG ATATCATGTG TATGGAATGT CTTTCCCGGA
241AGCTAAAGGA AGCAGTGACC CTATATCTGC GAGTTGTGAG AGTTGTAGAT CTCTGTGCAG
301GGCGGTGGTG GGAATACATG CCAAGTGGCT TTACAGATGC CAGTTTTCTA ACACTATTAA
361AGAAGATGCC AGATGTTGAA CAGCTATATG GCCTTCACCC TCGATACCTT GAGAGGCGAA
421GAGTAAGGGG CCATGAGGCT TTTAGCATTC CAGGAGTCCT AGAAGCTTTG CAGGCATGCC
481CAAACTTAGT GGGTGTGGAA ACTTCTCATT TGGAGTTGGT AGAATCCATT TGGACATATA
541TGCCCCATGT TCATATTTTG GGGAAATTTC GTAATCGTAA TGGAGCTTTT CCAATTCCTC
601CTGAAAATAA ACTGAAAATT CCTATAGGAG CCAAAATTCA AACTTTACAT TTAGTTGGGG
661TGAATGTTCC TGAAATTCCT TGTATCCCAA TGCTAAGGCA CCTTTATATG AAGTGGGTAA
721GACTCACTAA ACCACAGCCA TTTAAAGACT TCCTTTGTAT CAGCTTAAGA ACTTTCGTCA
781TGAGGAACTG TGCAGGACCC ACAAATTCCT TGAAATATGT CCCTTTAGTA ACAGGCTTAG
841CCTCTGCCCG AAACTTGGAA CACTTAGAAA TGGTTCGAGT TCCTTTCCTT GGAGGTCTTA
901TCCAACATGT TGTTGAAGAC AGTTGGAGAT CAGGTGGTTT TAGAAATTTG CACACTATTG
961TTCTGGGAGC TTGCAAAAAT GCTCTTGAAG TAGATCTTGG TTACCTCATC ATTACTGCTG
1021CCCGTAGGTT ACATGAAGTT CGGATCCAGC CTTCCCTAAC CAAAGATGGT GTCTTTTCTG
1081CCCTAAAGAT GGCAGAGTTG GAGTTTCCCC AGTTTGAAAC CCTTCATCTA GGATATGTAG
1141ATGAGTTTTT GCTACAGAGC AGAATGGCTA ATGCGGATCT GGTGAAGTAT GGTTTGGCTG
1201ATGTGGTAGA AAATCCTGGT ATCATCACTG ATATAGGGAT GAAAGCAGTC AATGAAGTTT
1261TTTCCTGTAT CAAATATCTG GCAATTTACA ATTGCCCTCA TCTACACAAC CCATACAATT
1321GGATCTCAGA CCACTCAAGA TGGACTCGAT TGGTTGATAT CAACCTAGTA CGGTGCCATG
1381CTTTGAAGCT GGACTCTTTT GGCCAGTTTA TTGAATTATT ACCCAGCCTA GAGTTTATTT
1441CACTGGATCA GATGTTTCGT GAACCACCCA AGGGTTGTGC TCGAGTTGGT CTGAGTGCAG
1501GCACAGGAAT TGGTGTTTCA TCAGCTCTTG TTAGCAACCA GAACTCCAAC AATGACGATA
1561ATAATGCCCA GAATAACAAT GCCAACATCC ACGACAACAA TCACCATCAT CCAGATGACT
1621CAGACGAGGA GAATGACTTT CGGCAAGATC TGCAGCCAGG AGAGCAGCAG TTTGCAGCTG
1681ACGCATTAAA TGAGATGGAA GACATCGTCC AAGAAGATGG AGAGGTGGTG GCCGAGAGTG
1741GAAATAATAC TCCAGCTCAC AGCCAGGCAA TTATTCCTGT GGATGTTGAT GAGGAACAAG
1801CAGGACCCAG TGGTCTTCAG CGTGTAGTAA AACCAACCTC AATTACTGTT CATGATTCAG
1861AGAGTGATGA TGAAGAAGAT AGTCTAGAAC TCCAAGAAGT CTGGATTCCT AAGAACGGTA
1921CTCGGCGTTA CTCTGAACGT GAAGAAAAAA CTGGAGAGTC AGTGCAGTCC AGAGAATTGT
1981CAGAAGTAGC CAAAACAAAG CCACGTCACG CCATGAAACG GAAGCGGACA GCAGATAAAT
2041CCACTAGTAC AAGTGATCCT GTGATCGAGG ATGACCATGT GCAGGTTCTT GTATTAAAAT
2101CCAAGAATCT TGTTGGAGTC ACTATGACCA ATTGTGGAAT CACAGATCTA GTGCTAAAAG
2161ACTGTCCAAA GATGATGTTC ATCCATGCTA CCAGGTGCAG GGTACTAAAA CATTTAAAGG
2221TAGAAAATGC ACCAATTGTA AACCGATTTG ACTATGCACA GTGCAAGAAA CTGAACATGG
2281ATCAGGTACT AGACCAGATA CTAAGAATGC CACCCGAGAG AAACCGCATC ATATACCTAC
2341GCCCAATGCA GCAGGTGGAC ACTCTAACTT TGGAGCAGAA GCTATTTAGT GGTCCCTACC
2401CCTATCACAT CTGTATTATC CATGAATTCA GTAACCCTCC CAATGTCCGG AATAAGGTGC
2461GCATTCGCAG CTGGATGGAC ACTATAGCAA ACATCAATCA AGAGCTCATT AAATATGAAT
2521TCTTCCCTGA AGCCACTCGA AGTGAAGAAG ACTTAAAGAA ATACCCCAAG TACCCCTGGG
2581GGAGAGAAAT CTATACTTTA GAAGGTGTTG TGGATGGAGC TCCATATTCC ATGATTTCTG
2641ACTTCCCTTG GCTGAGGTCA TTACGAGCTG CAGAGCCCAA CAGCTTCGCT CGATACGACT
2701TTGAAGACGA TGAAGAAAGC ACTATCTATG CTCCTAGAAG GAAAGGACAG CTGTCTGCAG
2761ACATCTGTAT GGAAACAATA GGAGAGGAAA TTTCAGAGAT GCGTCAGATG AAGAAGGGTG
2821TATTTCAGCG AGTAGTGGCA ATTTTTATCC ACTATTGTGA TGTCAATGGA GAGCCAGTTG
2881AAGATGACTA CATTTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
2941tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)