Construct: ORF ccsbBroadEn_12717
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001757.1_s300c1, BRDN0000397225
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FBXO38 (81545)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 81545 | FBXO38 | F-box protein 38 | NM_001271723.1 | 100% | 100% | |
| 2 | human | 81545 | FBXO38 | F-box protein 38 | NM_030793.5 | 84.7% | 84.7% | 1918_2427del |
| 3 | human | 81545 | FBXO38 | F-box protein 38 | XM_006714797.2 | 82.2% | 82.2% | 1916_2524del |
| 4 | human | 81545 | FBXO38 | F-box protein 38 | NM_205836.3 | 79.3% | 79.3% | 1914_2648del |
| 5 | human | 81545 | FBXO38 | F-box protein 38 | XM_024446223.1 | 79.3% | 79.3% | 1914_2648del |
| 6 | human | 81545 | FBXO38 | F-box protein 38 | XR_001742284.1 | 62.5% | (many diffs) | |
| 7 | human | 81545 | FBXO38 | F-box protein 38 | XM_017009901.2 | 51.8% | 51.8% | 0_1ins1098;820_1329del |
| 8 | human | 81545 | FBXO38 | F-box protein 38 | XM_017009899.1 | 48.5% | 48.5% | 0_1ins1098;816_1550del |
| 9 | human | 81545 | FBXO38 | F-box protein 38 | XM_017009902.2 | 48% | 47.4% | (many diffs) |
| 10 | human | 81545 | FBXO38 | F-box protein 38 | XM_011537684.3 | 44.9% | 44.4% | (many diffs) |
| 11 | human | 81545 | FBXO38 | F-box protein 38 | XM_017009900.2 | 44.9% | 44.4% | (many diffs) |
| 12 | mouse | 107035 | Fbxo38 | F-box protein 38 | XM_006525502.3 | 74.3% | 80.3% | (many diffs) |
| 13 | mouse | 107035 | Fbxo38 | F-box protein 38 | XM_006525501.3 | 74.3% | 80.2% | (many diffs) |
| 14 | mouse | 107035 | Fbxo38 | F-box protein 38 | NM_134136.3 | 69.7% | 75.3% | (many diffs) |
| 15 | mouse | 107035 | Fbxo38 | F-box protein 38 | XM_006525497.3 | 69.6% | 75.3% | (many diffs) |
| 16 | mouse | 107035 | Fbxo38 | F-box protein 38 | XM_006525498.1 | 69.6% | 75.3% | (many diffs) |
| 17 | mouse | 107035 | Fbxo38 | F-box protein 38 | XM_006525499.3 | 69.6% | 75.3% | (many diffs) |
| 18 | mouse | 107035 | Fbxo38 | F-box protein 38 | XM_017317781.1 | 38.8% | 40.9% | (many diffs) |
| 19 | mouse | 107035 | Fbxo38 | F-box protein 38 | XM_017317780.1 | 38.8% | 40.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2895
- ORF length:
- 2829
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GCCACGAAAG AAAAGTGTGA AAACATGTAT CATGAATAAT GAAATTCCAG 121 AAGAAATGAC AGCAGATGAA ACAAAGGACT ATATGAATCA ACTTTCACAT GAAGTACTTT 181 GCCATATTTT TAGGTACCTC CCTCTGCAGG ATATCATGTG TATGGAATGT CTTTCCCGGA 241 AGCTAAAGGA AGCAGTGACC CTATATCTGC GAGTTGTGAG AGTTGTAGAT CTCTGTGCAG 301 GGCGGTGGTG GGAATACATG CCAAGTGGCT TTACAGATGC CAGTTTTCTA ACACTATTAA 361 AGAAGATGCC AGATGTTGAA CAGCTATATG GCCTTCACCC TCGATACCTT GAGAGGCGAA 421 GAGTAAGGGG CCATGAGGCT TTTAGCATTC CAGGAGTCCT AGAAGCTTTG CAGGCATGCC 481 CAAACTTAGT GGGTGTGGAA ACTTCTCATT TGGAGTTGGT AGAATCCATT TGGACATATA 541 TGCCCCATGT TCATATTTTG GGGAAATTTC GTAATCGTAA TGGAGCTTTT CCAATTCCTC 601 CTGAAAATAA ACTGAAAATT CCTATAGGAG CCAAAATTCA AACTTTACAT TTAGTTGGGG 661 TGAATGTTCC TGAAATTCCT TGTATCCCAA TGCTAAGGCA CCTTTATATG AAGTGGGTAA 721 GACTCACTAA ACCACAGCCA TTTAAAGACT TCCTTTGTAT CAGCTTAAGA ACTTTCGTCA 781 TGAGGAACTG TGCAGGACCC ACAAATTCCT TGAAATATGT CCCTTTAGTA ACAGGCTTAG 841 CCTCTGCCCG AAACTTGGAA CACTTAGAAA TGGTTCGAGT TCCTTTCCTT GGAGGTCTTA 901 TCCAACATGT TGTTGAAGAC AGTTGGAGAT CAGGTGGTTT TAGAAATTTG CACACTATTG 961 TTCTGGGAGC TTGCAAAAAT GCTCTTGAAG TAGATCTTGG TTACCTCATC ATTACTGCTG 1021 CCCGTAGGTT ACATGAAGTT CGGATCCAGC CTTCCCTAAC CAAAGATGGT GTCTTTTCTG 1081 CCCTAAAGAT GGCAGAGTTG GAGTTTCCCC AGTTTGAAAC CCTTCATCTA GGATATGTAG 1141 ATGAGTTTTT GCTACAGAGC AGAATGGCTA ATGCGGATCT GGTGAAGTAT GGTTTGGCTG 1201 ATGTGGTAGA AAATCCTGGT ATCATCACTG ATATAGGGAT GAAAGCAGTC AATGAAGTTT 1261 TTTCCTGTAT CAAATATCTG GCAATTTACA ATTGCCCTCA TCTACACAAC CCATACAATT 1321 GGATCTCAGA CCACTCAAGA TGGACTCGAT TGGTTGATAT CAACCTAGTA CGGTGCCATG 1381 CTTTGAAGCT GGACTCTTTT GGCCAGTTTA TTGAATTATT ACCCAGCCTA GAGTTTATTT 1441 CACTGGATCA GATGTTTCGT GAACCACCCA AGGGTTGTGC TCGAGTTGGT CTGAGTGCAG 1501 GCACAGGAAT TGGTGTTTCA TCAGCTCTTG TTAGCAACCA GAACTCCAAC AATGACGATA 1561 ATAATGCCCA GAATAACAAT GCCAACATCC ACGACAACAA TCACCATCAT CCAGATGACT 1621 CAGACGAGGA GAATGACTTT CGGCAAGATC TGCAGCCAGG AGAGCAGCAG TTTGCAGCTG 1681 ACGCATTAAA TGAGATGGAA GACATCGTCC AAGAAGATGG AGAGGTGGTG GCCGAGAGTG 1741 GAAATAATAC TCCAGCTCAC AGCCAGGCAA TTATTCCTGT GGATGTTGAT GAGGAACAAG 1801 CAGGACCCAG TGGTCTTCAG CGTGTAGTAA AACCAACCTC AATTACTGTT CATGATTCAG 1861 AGAGTGATGA TGAAGAAGAT AGTCTAGAAC TCCAAGAAGT CTGGATTCCT AAGAACGGTA 1921 CTCGGCGTTA CTCTGAACGT GAAGAAAAAA CTGGAGAGTC AGTGCAGTCC AGAGAATTGT 1981 CAGAAGTAGC CAAAACAAAG CCACGTCACG CCATGAAACG GAAGCGGACA GCAGATAAAT 2041 CCACTAGTAC AAGTGATCCT GTGATCGAGG ATGACCATGT GCAGGTTCTT GTATTAAAAT 2101 CCAAGAATCT TGTTGGAGTC ACTATGACCA ATTGTGGAAT CACAGATCTA GTGCTAAAAG 2161 ACTGTCCAAA GATGATGTTC ATCCATGCTA CCAGGTGCAG GGTACTAAAA CATTTAAAGG 2221 TAGAAAATGC ACCAATTGTA AACCGATTTG ACTATGCACA GTGCAAGAAA CTGAACATGG 2281 ATCAGGTACT AGACCAGATA CTAAGAATGC CACCCGAGAG AAACCGCATC ATATACCTAC 2341 GCCCAATGCA GCAGGTGGAC ACTCTAACTT TGGAGCAGAA GCTATTTAGT GGTCCCTACC 2401 CCTATCACAT CTGTATTATC CATGAATTCA GTAACCCTCC CAATGTCCGG AATAAGGTGC 2461 GCATTCGCAG CTGGATGGAC ACTATAGCAA ACATCAATCA AGAGCTCATT AAATATGAAT 2521 TCTTCCCTGA AGCCACTCGA AGTGAAGAAG ACTTAAAGAA ATACCCCAAG TACCCCTGGG 2581 GGAGAGAAAT CTATACTTTA GAAGGTGTTG TGGATGGAGC TCCATATTCC ATGATTTCTG 2641 ACTTCCCTTG GCTGAGGTCA TTACGAGCTG CAGAGCCCAA CAGCTTCGCT CGATACGACT 2701 TTGAAGACGA TGAAGAAAGC ACTATCTATG CTCCTAGAAG GAAAGGACAG CTGTCTGCAG 2761 ACATCTGTAT GGAAACAATA GGAGAGGAAA TTTCAGAGAT GCGTCAGATG AAGAAGGGTG 2821 TATTTCAGCG AGTAGTGGCA ATTTTTATCC ACTATTGTGA TGTCAATGGA GAGCCAGTTG 2881 AAGATGACTA CATTTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 2941 tatcaatttg ttgcaacgaa c