Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12758
Subject:
XR_001737469.1
Aligned Length:
3921
Identities:
1806
Gaps:
2115

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGGGGTGTGTGTTTCGCCTGCGCAGTGGTCCTGGCCACCGGCTCGCGGCGCGTGGAGGCTGCTCCCAGCCGCGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCGAGTCAGACTCGGGTGGGGGTCCCGGCGGCGGTAGCGGCGGCGGCGGTGCGAGCATGTCGTGGCTCTTCGGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTTAACAAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTTGCCGCCCGCGCAGCCCGGGGCCGAGGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGGCGGGGACCGCGGTTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAGCAACTTCGACCCCACCGGCCTGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTACGCCAAGGAGGCCCTGAATCTGGCGCAGATG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGCTGGAGTGCAATGGCGCAATCTCGGCTCACT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCAACCTCCGCCTCCCGGGTTCAAGCGATTCATCTGCCTCAGCCTCTGGAGTAGCTGGGATTACAGGCACGCGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CACCACGCCTGGCTAATGTTGTATTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCTAACTCC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CGACCTCAGGTGATCCACCCGCCTCGGCCTCTCAAACTGCTGGGATTACAGGCACGCGCCACCACGCCTGGCCT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ATTTTATTTTATTTTGAGACAGAGTGTCACTCTGTCCCCCAGTCTGGCGTGCAATGGTTTGATCTCGGCTCACT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCAACCTCCACCTCCCGGGTTCAACCTCCTGCCTCAGCCTTCCGAGCAGCTGGGACTACAGGAGCCTGCCACCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CATCTGGCGAATTTTTGTATTTTTAGTAGAGAAGGGGGTTCAGCATGTTGTCCAGGTTGGTCTTGAACTCCTGA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCTCAGGTGATCCAGCCACTTTGGCCTCACAAAGTGCTGGGATTATAGGCAAGAGCGATGGCGCCCGGCCCACT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CAGCAGGATTCCTAGAATGGGCACGAGCTCTGCCCTCATCACAGTCCAAAAGTGAGCACCTGCCTGGAGCTGCC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CAGAAACAGCCTTGTGGGGTGGGGTTGGTGTCTGACCTCCCTCCCCGGGGGCCTTCGCAGGCTTCTCTGCTGGT  1110

Query    1  ---------------------------------------------------ATGCAGCTGGAAGCCCTGAACCT  23
                                                               |||||||||||||||||||||||
Sbjct 1111  GCTTCTGTGCCTGTGGGTCTGGATTCCTCCAGGGCCTGATCCTGGGTGCAGATGCAGCTGGAAGCCCTGAACCT  1184

Query   24  GCTGCACACACTAGTCTGGGCACGGAGTCTCTGCCGTGCCGGAGCTGTGCAGACACAGGAGCGGCTGTCAGGCA  97
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GCTGCACACACTAGTCTGGGCACGGAGTCTCTGCCGTGCCGGAGCTGTGCAGACACAGGAGCGGCTGTCAGGCA  1258

Query   98  GTGCCAGCCCTGAGCAAGTGCCAGCTGGTGAGTGCTGTGCTCTGCAGGAGTATGAGGCCGCCGTGGAGCAGCTC  171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GTGCCAGCCCTGAGCAAGTGCCAGCTGGTGAGTGCTGTGCTCTGCAGGAGTATGAGGCCGCCGTGGAGCAGCTC  1332

Query  172  AAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGC  245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGC  1406

Query  246  CAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAGCAACTTCTCAATG  319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAGCAACTTCTCAATG  1480

Query  320  AGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCACCGTGGAGCGGGAG  393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCACCGTGGAGCGGGAG  1554

Query  394  ATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGACCGAGGCCCGGGCGCGCGCCAAGGCCGAGCGGGA  467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  ATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGACCGAGGCCCGGGCGCGCGCCAAGGCCGAGCGGGA  1628

Query  468  GAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGTCCGAGCACCGTCAGACCGTCTTGGAGTCCATCA  541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGTCCGAGCACCGTCAGACCGTCTTGGAGTCCATCA  1702

Query  542  GGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGACAAAGTGACAGCCACGGTG  615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGACAAAGTGACAGCCACGGTG  1776

Query  616  GCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGCCGTCACTGGCCGCTTCATCGA  689
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGCCGTCACTGGCCGCTTCATCGA  1850

Query  690  GGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTGGAGGCGCTGCGGCACCCCA  763
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTGGAGGCGCTGCGGCACCCCA  1924

Query  764  TCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGCTGGAGGGTGTTGTGCTTAGTCCCAGCCTGGAA  837
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  TCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGCTGGAGGGTGTTGTGCTTAGTCCCAGCCTGGAA  1998

Query  838  GCACGGGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGAACCGGGGCCTGTACAGGCACATCCTGCT  911
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GCACGGGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGAACCGGGGCCTGTACAGGCACATCCTGCT  2072

Query  912  GTATGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCCA  985
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  GTATGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCCA  2146

Query  986  TCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGCC  1059
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  TCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGCC  2220

Query 1060  AATACCAGCCGGCGCGGCCTCCTGCTCTTCATGGATGAAGCAGACGCCTTCCTTCGGAAGCGAGCCACTGAGGA  1133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  AATACCAGCCGGCGCGGCCTCCTGCTCTTCATGGATGAAGCAGACGCCTTCCTTCGGAAGCGAGCCACTGAGGA  2294

Query 1134  GATAAGCAAGGACCTCAGAGCCACACTGAACGCCTTCCTGTACCACATGGGCCAACACAGCAACAA--------  1199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct 2295  GATAAGCAAGGACCTCAGAGCCACACTGAACGCCTTCCTGTACCACATGGGCCAACACAGCAACAACCCCAGTC  2368

Query 1200  --------------------------------------------------------------------------  1199
                                                                                      
Sbjct 2369  ACGTGTCACACGGAGGATCAAGTCCTGCTGGTCGGCCGTGGCTGACTCTTCAGGCACGTTGGGCTCCTGGGTCA  2442

Query 1200  --------------------------------------------------------------------------  1199
                                                                                      
Sbjct 2443  GCTGCTGCCGTTCGACGCTCCCTGGAGCCCTGACTCAGGTCCTTCCCAGAGAGGCAAGGCTGGGGCCCTGCTGA  2516

Query 1200  --------------------------------------------------------------------------  1199
                                                                                      
Sbjct 2517  GCCTCTGCTGAACCCGGGCCCCCGAGGTCCTGCTTCTGGCTCGCATGGCCATAATCTTGACAGGGACTCTGGGT  2590

Query 1200  --------------------------------------------------------------------------  1199
                                                                                      
Sbjct 2591  CCCGCATCCCTGCTCCCAGCACAGCGGGGCTCAGGTAGCAGGAGGGAGTGGTGTTCCCGGCACTGCCTATCAGG  2664

Query 1200  --------------------------------------------------------------------------  1199
                                                                                      
Sbjct 2665  CTGGGCGAGGGTCAGCGGGGAAGTACCACACAGGGCAAGAACAGAGGCCCGAGAAGCCGGGCGGGGGGCAGCTG  2738

Query 1200  --------------------------------------------------------------------------  1199
                                                                                      
Sbjct 2739  GGCGTGGTGGGGCAGGCAGGCGGGTGACCAGGGCTGTGGCTGCGTTCTCCCCATGTTTCCTGTGCTCACAAGCT  2812

Query 1200  --------------------------------------------------------------------------  1199
                                                                                      
Sbjct 2813  GCCGCTTTAGATTCTCCCAAAAAGTCTCCCCGAGGGGGCTGAGGAGCCCCCGTTGCCCTCGGGGCATCTCAGCT  2886

Query 1200  ---------------------------------------ATTCATGCTGGTCCTGGCCAGCAATCTGCCTGAGC  1234
                                                   |||||||||||||||||||||||||||||||||||
Sbjct 2887  GGCAGCCCCAGCGTTTCCTTCCCCATCCCTGTCCTACAGATTCATGCTGGTCCTGGCCAGCAATCTGCCTGAGC  2960

Query 1235  AGTTCGACTGTGCCATCAACAGCCGCATTGACGTGATGGTCCACTTCGACCTGCCGCAGCAGGAGGAGCGGGAG  1308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  AGTTCGACTGTGCCATCAACAGCCGCATTGACGTGATGGTCCACTTCGACCTGCCGCAGCAGGAGGAGCGGGAG  3034

Query 1309  CGCCTGGTGAGACTGCATTTTGACAACTGTGTTCTTAAGCCGGCCACAGAAGGAAAACGGCGCCTGAAGCTGGC  1382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035  CGCCTGGTGAGACTGCATTTTGACAACTGTGTTCTTAAGCCGGCCACAGAAGGAAAACGGCGCCTGAAGCTGGC  3108

Query 1383  CCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCTC  1456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109  CCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCTC  3182

Query 1457  AGCTGGCCGTGTCCTGGCAGGCCACGGCATATGCCTCCAAGGACGGGGTCCTCACTGAGGCCATGATGGACGCC  1530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183  AGCTGGCCGTGTCCTGGCAGGCCACGGCATATGCCTCCAAGGACGGGGTCCTCACTGAGGCCATGATGGACGCC  3256

Query 1531  TGTGTGCAAGATGCTGTCCAGCAGTACCGACAGAAGATGCGCTGGCTGAAGGCGGAGGGGCCTGGGCGCGGGGT  1604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257  TGTGTGCAAGATGCTGTCCAGCAGTACCGACAGAAGATGCGCTGGCTGAAGGCGGAGGGGCCTGGGCGCGGGGT  3330

Query 1605  CGAGCACCCCCTATCCGGAGTCCAAGGCGAGACCCTCACCTCATGGAGCCTGGCCACGGACCCCTCCTACCCCT  1678
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331  CGAGCACCCCCTATCCGGAGTCCAAGGCGAGACCCTCACCTCATGGAGCCTGGCCACGGACCCCTCCTACCCCT  3404

Query 1679  GCCTTGCCGGCCCCTGCACATTTAGGATATGCTCCTGGATGGGGACTGGGCTGTGCCCAGGGCCTCTGTCCCCC  1752
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405  GCCTTGCCGGCCCCTGCACATTTAGGATATGCTCCTGGATGGGGACTGGGCTGTGCCCAGGGCCTCTGTCCCCC  3478

Query 1753  AGGATGTCTTGTGGTGGCGGTCGGCCGTTCTGCCCCCCAGGGCACCCCCTGTTG--------------------  1806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
Sbjct 3479  AGGATGTCTTGTGGTGGCGGTCGGCCGTTCTGCCCCCCAGGGCACCCCCTGTTGTAGGCACTGGCTAGGGAGGG  3552

Query 1807  --------------------------------------------------------------------------  1806
                                                                                      
Sbjct 3553  GCAGGCCTCCTTCCTGCCCCTCGAGACACTCTTGGGAGATGCATTTTCCGTCTGGCTCACAGGGGGAGGGTGAG  3626

Query 1807  --------------------------------------------------------------------------  1806
                                                                                      
Sbjct 3627  GCTTTGTACCCCAGCCCCTGCCCAGGCCACTGTGAGGGTGGGTGCTGGCTGAGCCCCTGGGGCAGAAGGAGTGG  3700

Query 1807  --------------------------------------------------------------------------  1806
                                                                                      
Sbjct 3701  GGCAGGCGGGGTCTTTGTTCTCGGCTCCCACAGCAGAGCCAGGTGAGGGGGGGCCTGCCAGGACTAGACAGAAG  3774

Query 1807  --------------------------------------------------------------------------  1806
                                                                                      
Sbjct 3775  TGGGGCGGCCTGAACCCTGCTTCCAGCCATGGCCAGGGGCCACGGAACCCGGCAGGGGTGTCTGAGGCCGCCCT  3848

Query 1807  -------------------------------------------------------------------------  1806
                                                                                     
Sbjct 3849  GTCAGCTGGCCGGTCCAAGCCTGTGGCTGGAGCTGGTGTGTGTTTATCTAATAAAGTCCCACAGGTGCCTCAC  3921

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.