Construct: ORF ccsbBroadEn_12758
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000914.1_s300c1, BRDN0000396662
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATAD3B (83858)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83858 | ATAD3B | ATPase family AAA domain co... | NM_001317238.2 | 100% | 100% | |
| 2 | human | 83858 | ATAD3B | ATPase family AAA domain co... | NM_031921.6 | 88% | 83.9% | (many diffs) |
| 3 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XM_011542244.1 | 86.4% | 86.4% | 1_282del |
| 4 | human | 55210 | ATAD3A | ATPase family AAA domain co... | NM_001170536.2 | 79.7% | 76% | (many diffs) |
| 5 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XM_005244806.3 | 77.6% | 72.5% | (many diffs) |
| 6 | human | 55210 | ATAD3A | ATPase family AAA domain co... | NM_001170535.3 | 77.5% | 69.2% | (many diffs) |
| 7 | human | 55210 | ATAD3A | ATPase family AAA domain co... | XM_024448098.1 | 74.5% | 66.5% | (many diffs) |
| 8 | human | 55210 | ATAD3A | ATPase family AAA domain co... | NM_018188.5 | 74.1% | 72.1% | (many diffs) |
| 9 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_946776.2 | 67.5% | (many diffs) | |
| 10 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_001737470.1 | 67.1% | (many diffs) | |
| 11 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_241045.2 | 66% | (many diffs) | |
| 12 | human | 55210 | ATAD3A | ATPase family AAA domain co... | XR_001737282.1 | 65.5% | (many diffs) | |
| 13 | human | 55210 | ATAD3A | ATPase family AAA domain co... | XR_002956997.1 | 63.5% | (many diffs) | |
| 14 | human | 219293 | ATAD3C | ATPase family AAA domain co... | NM_001039211.3 | 62.3% | 58% | (many diffs) |
| 15 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XM_011542241.3 | 61.8% | 52.9% | (many diffs) |
| 16 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_001737468.1 | 56.5% | (many diffs) | |
| 17 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_002957738.1 | 48.3% | (many diffs) | |
| 18 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_001737469.1 | 46% | 1_1161del;2361_2925del;3533_3921del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1872
- ORF length:
- 1806
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA GCTGGAAGCC CTGAACCTGC TGCACACACT AGTCTGGGCA CGGAGTCTCT 121 GCCGTGCCGG AGCTGTGCAG ACACAGGAGC GGCTGTCAGG CAGTGCCAGC CCTGAGCAAG 181 TGCCAGCTGG TGAGTGCTGT GCTCTGCAGG AGTATGAGGC CGCCGTGGAG CAGCTCAAGA 241 GCGAGCAGAT CCGGGCGCAG GCTGAGGAGA GGAGGAAGAC CCTGAGCGAG GAGACCCGGC 301 AGCACCAGGC CAGGGCCCAG TATCAAGACA AGCTGGCCCG GCAGCGCTAC GAGGACCAAC 361 TGAAGCAGCA GCAACTTCTC AATGAGGAGA ATTTACGGAA GCAGGAGGAG TCCGTGCAGA 421 AGCAGGAAGC CATGCGGCGA GCCACCGTGG AGCGGGAGAT GGAGCTGCGG CACAAGAATG 481 AGATGCTGCG AGTGGAGACC GAGGCCCGGG CGCGCGCCAA GGCCGAGCGG GAGAATGCAG 541 ACATCATCCG CGAGCAGATC CGCCTGAAGG CGTCCGAGCA CCGTCAGACC GTCTTGGAGT 601 CCATCAGGAC GGCTGGCACC TTGTTTGGGG AAGGATTCCG TGCCTTTGTG ACAGACCGGG 661 ACAAAGTGAC AGCCACGGTG GCTGGGCTGA CGCTGCTGGC TGTCGGGGTC TACTCAGCCA 721 AGAATGCGAC AGCCGTCACT GGCCGCTTCA TCGAGGCTCG GCTGGGGAAG CCGTCCCTAG 781 TGAGGGAGAC GTCCCGCATC ACGGTGCTGG AGGCGCTGCG GCACCCCATC CAGGTCAGCC 841 GGCGGCTCCT CAGTCGACCC CAGGACGTGC TGGAGGGTGT TGTGCTTAGT CCCAGCCTGG 901 AAGCACGGGT GCGCGACATC GCCATAGCAA CCAGGAACAC CAAGAAGAAC CGGGGCCTGT 961 ACAGGCACAT CCTGCTGTAT GGGCCACCAG GCACCGGGAA GACGCTGTTT GCCAAGAAAC 1021 TCGCCCTGCA CTCAGGCATG GACTACGCCA TCATGACAGG CGGGGACGTG GCCCCCATGG 1081 GGCGGGAAGG CGTGACCGCC ATGCACAAGC TCTTTGACTG GGCCAATACC AGCCGGCGCG 1141 GCCTCCTGCT CTTCATGGAT GAAGCAGACG CCTTCCTTCG GAAGCGAGCC ACTGAGGAGA 1201 TAAGCAAGGA CCTCAGAGCC ACACTGAACG CCTTCCTGTA CCACATGGGC CAACACAGCA 1261 ACAAATTCAT GCTGGTCCTG GCCAGCAATC TGCCTGAGCA GTTCGACTGT GCCATCAACA 1321 GCCGCATTGA CGTGATGGTC CACTTCGACC TGCCGCAGCA GGAGGAGCGG GAGCGCCTGG 1381 TGAGACTGCA TTTTGACAAC TGTGTTCTTA AGCCGGCCAC AGAAGGAAAA CGGCGCCTGA 1441 AGCTGGCCCA GTTTGACTAC GGGAGGAAGT GCTCGGAGGT CGCTCGGCTG ACGGAGGGCA 1501 TGTCGGGCCG GGAGATCGCT CAGCTGGCCG TGTCCTGGCA GGCCACGGCA TATGCCTCCA 1561 AGGACGGGGT CCTCACTGAG GCCATGATGG ACGCCTGTGT GCAAGATGCT GTCCAGCAGT 1621 ACCGACAGAA GATGCGCTGG CTGAAGGCGG AGGGGCCTGG GCGCGGGGTC GAGCACCCCC 1681 TATCCGGAGT CCAAGGCGAG ACCCTCACCT CATGGAGCCT GGCCACGGAC CCCTCCTACC 1741 CCTGCCTTGC CGGCCCCTGC ACATTTAGGA TATGCTCCTG GATGGGGACT GGGCTGTGCC 1801 CAGGGCCTCT GTCCCCCAGG ATGTCTTGTG GTGGCGGTCG GCCGTTCTGC CCCCCAGGGC 1861 ACCCCCTGTT GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1921 caatttgttg caacgaac