Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_001736986.1
Aligned Length:
3744
Identities:
188
Gaps:
3529

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCTCAGAGCTCGGGGGCGGCGCTCAGAAAACATCTGGAGAAAATGACCCATTGGTTTCATAGGAACCCATTAAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCCACAGCTCCTGTGTCTTTTAATTACTATGGTGTAGTCACTGGCCCTTCTGCTTCAAAAATATGCAATGACT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGAGGTCATCCAGGGCACGACTCCTTGAACTGTTCACTGATTTGAGCTGTAATCCAGAAATGATGAAGAATGCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCAGATTCATATTTCTCACTTTTACAAGGTTTCATAAATTCTTTGGATGAATCTACCCAAGAAAGCAAGTTACG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ATATATTCAAAATTTCAAGTGGACTGATACATTGCAAGGACAGGTTCCAAGTGCCCAGCAGGATGCTGTTTTTG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AATTAATTTCCATGGGATTTAATGTAGCTTTATGGTATACCAAATATGCTTCAAGACTGGCTGGAAAAGAAAAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATAACAGAAGATGAAGCAAAAGAAGTTCATCGAAGCCTAAAGATTGCAGCTGGGATTTTTAAACATTTAAAGGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AAGTCATCTCCCAAAACTCATTACACCTGCGGAAAAAGGAAGAGATTTAGAGTCACGACTCATAGAAGCATACG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTATTCAATGTCAGGCTGAAGCTCAAGAAGTAACAATTGCTCGAGCAATTGAACTAAAACATGCTCCTGGACTA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ATTGCTGCACTGGCGTATGAAACAGCCAATTTCTATCAAAAAGCTGTTTGGAGCCTGCATATTCTGCCAAATGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AGAAAATATCTTCACTTGAAGATGTGTTTCTACACAGCTTATGCTTACTGTTACCATGGTGAGACTTTATTGGC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TAGTGATAAATGCGGTGAAGCAATCAGGTCTCTCCAAGAAGCAGAAAAATTGTATGCAAAGGCAGAAGCACTGT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTAAAGAATATGGAGAAACCAAAGGACCTGGACCAACAGTCAAACCTTCAGGACATCTGTTCTTTAGGAAACTT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGAAACCTTGTGAAGAACACCCTAGAAAAATGTCAGAGAGAAAATGGATTTATTTACTTTCAAAAAATTCCAAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AGAAGCCCCACAGCTGGAACTCAAAGCAAATTATGGTCTCGTAGAGCCTATACCTTTCGAATTTCCTCCTACAA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GTGTTCAGTGGACACCAGAAACATTGGCTGCATTTGATCTCACCAAAAGACCCAAGGATGACAGTACTAAACCC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AAACCAGAAGAAGAAGTGAAACCTGTGAAAGAACCAGACATCAAACCTCAAAAGGACACTGGGTGCTACATCTC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CTAAAATACAACTTGCACTTAGAATTTCTCTAGCAGTAAATAAGATAAACCACAGAATTTCAGTTCTTATTTCT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CAAAATGATTTCTCTGAAGCTTGTAGAATAACTATTATATTCAGAGGGTTATCTGCCTTCAGCTTACTTGTTCT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TAATTTTTAATACAGCGGAGATGTTTCTTGCTTTGTTTTCAGACTCTCCTTTTTAATCAGGACAACATTTGAAA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GATTTTATTGTGCCTCTAAAGGGTATATTTGGGGGTTGGGTCTTTTTGTTAAACTCTGGATAGTAATAAGTTTC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AGGTCAGTATAGGCCCGAATCATGTGGTTTCAGGTATGTTTTTCTTTTTTCTTTTTCTTTTTTTTTTTTCTTTT  1628

Query    1  --------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCA  54
                                .|||||||||..|||||.||||||.||||||||.||||||||||||||||||||
Sbjct 1629  TTTTTTTTTTTTTTTTTGAGGTGGAGTCTCCCTCTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCA  1702

Query   55  CTGCAA-CCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACA  127
            |||||| ||||..||||..||..|.|||.||||||||||||||.||||||.||||||||||||||||||||||.
Sbjct 1703  CTGCAACCCTCCACCTCCTGAATTAAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACG  1776

Query  128  CGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCT  201
            |.|.||.|..|||.|.|||   |||||||||||||||||||||.|.|.||||||||||||||||||||||||||
Sbjct 1777  CACCACTACACCCAGATAA---TTTTTGTATTTTTAGTAGAGACGTGATTTCACCATGTTGGCCAGGCTGGTCT  1847

Query  202  CGAACTCCTGACCTCAAG--------------------------------------------------------  219
            ||||||||||||||| ||                                                        
Sbjct 1848  CGAACTCCTGACCTC-AGCTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGATCCACTGC  1920

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1921  ACCTGGCCTCAGGTATGTTTTTCTATCTACACACAAAAAGTTTATTTTCCTTCCTCTTATTTGATATCAGAAGA  1994

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1995  ATGACAGGAATCAGTTTTTAACAGAGATAGTTTTTCCGTTTCTCCATTGTGTTAATCAGAGCGCAGACTTACAT  2068

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2069  TCTCAGTCATTTATCTTTTCTGGTGGAGAATAAAAAGTCACTTATAGTTAAAGATCAGAAAATTATCACACCAA  2142

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2143  ATCCATTACATATGTTAGAATCAATAATTTACTCAAAAATCAGCTTTTATAGGTATGTTGGCACCTTATCCAAG  2216

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2217  AACTTATCCCTGTTCCAGTACCCCTGTGCTTCATTCAGTATCAGTAACCCTGCAATGATTTTTACAAATATCTT  2290

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2291  TTTCTAGTGGGTTTTTTACTTAGAGGAAAGAACTTTGTAATAGCTCTTAATGTTTATATATAAGAGAAGACAGA  2364

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2365  ATGGAAAATGTTTTTTGAAGTCAAATATTGCATGATGTAAAGAAAAAACTTTAAACTTAAATGAGTAGGTTGTC  2438

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2439  CTGAATTACACTGGTAACTCTCTACTTCTTTATTAAAGAAGTTATAGTAAGATGCCTTTGTTACCTGATTTCAG  2512

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2513  TGTACATTGTTTTTATGTGGTTTTCTGATAATGTCCTGTCAGAATTGTATTGGTTTAGGCCAAAGGCCATAGCA  2586

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2587  AAAACATAGAGAACAAATATGATCTTAAAAATAGATTGTAACATTTTAAACAATTAGTTTAGTAATTTGGGAAA  2660

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2661  TAGTGGATGCATAATACTTTAACAGAAGTCACACATCTGTAGGTTTATCTTTTGATTATTCTCCTGAGGCATTA  2734

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2735  GATAGTTTTTCTATTATAAGTGACAGATTGACTCACTTAATATAAATAAGTAGCATACACTAAAAGCTTACTAT  2808

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2809  GTGCCAGATACTGTGCTGGACACTTACATAGATAAGCCATTGAATCCACACAGCAGCCCTGTAAGAAATAAGTA  2882

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2883  AAATCTGCATAAAGTGTTGAAATAGGAATATACATTTCATTATGAAAAATGAATAGATTATGCCTATCTGAATC  2956

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2957  AATATTGCATTCAAATAAGTGATTACTTAAATCATATATCATAGTTTACACTCCTTAAAAAAAGGTACATAAAT  3030

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3031  TCAGTGAGGTTTTTTTCTTAACATACAGAAGTACTAAATACTGCTTGCAGTATAATATTGATATTGGAAGCTGC  3104

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3105  AGTTTCCAGAATAAGTGGAGTAATAACTAAACAGACATTTAATTTTATTTCAATATCTATGGAAAAAACACTTA  3178

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3179  TTAAATCTCCCTGTATTTTATGTTGTCTTTATTACAGAATCACTTGTCTGTTTGTTGTGTGCCACTTACTGACA  3252

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3253  AAACTTTAAACAGTACTTGATGCCAGCTCTCTACTCTGTGGCTGTGGGACCTGTTTCTTTTAGGTACTTGTGCT  3326

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3327  TATTAATCTACTTACTAAATTTTCACATTGACATTTTTGGGGATGATACTACCATATACGAAATGGAAAATGTA  3400

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3401  ATATGCTCAGTGCTTCTGTAAAATGCAGCAATACTGGTATTACTTTACATCAGTAGGCATCTTTGACATGAGCA  3474

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3475  TATAAATATTTTGTTGACTCAGCAAAGGTGACACTTTGTGACTAAAGTATCCCATTATATATAATGTTTTTTGA  3548

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3549  AATGTTGGAAATTTTGGGGAATTATCAAATGTATAGAAGTTGCATGAAGGTTATAGAGAGGTGTAACTGTTTGT  3622

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3623  TAACTATTACATGGATTTCATACTAGGCAGTGACAACTAACATGTTACTTCAACTAAAAGTGTATAATGGGTTG  3696

Query  220  --------------------------------------------  219
                                                        
Sbjct 3697  TCTTTTTATTTATGAAAATAAAAGTAATTTTACTTACAATTTCA  3740

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