Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- XR_001753371.1
- Aligned Length:
- 4204
- Identities:
- 192
- Gaps:
- 3985
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATAGGTGTTGGTGCAGAACGGTTAAGAAGGCTCCTTCTGTACCAGAAGTGAGGCCCAAGTAGGAGCTTATTCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGTCAGTGGAAATCGTGCAGACCTTCCAGAAGGGAATGATGTAATTGGAAAGCATTTTTGGATACTGCACGGCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTCGTTTGAAGAAAAAACTGGAGAGATGGGGGATGGAAGCCTGGGAGTCACATTTTTTCAAGCAAGACATCACA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGGGTGAGGCCCAGTGACAGAGATGACAGATATTCAAAGATGGAATGAAAGAGGTTTGGTGACTGGATATAAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAACGAAACAGGAAGAATTGAATTTGGGTCTGATATTTCCTGGATGCAAGATCAGGAGGATGTTGGCACCATGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTTAGTGGGGAAACTGGGGACCGATTCTGGAGGTATACCAGCATGGTGAGTTTGGTTTTAGATGGGTTGTGTTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GACATAGGGCTAGCAATTCTAAGTGAAGATGTCTAAAGAAAGATAGAAGTGACTCAGCTCTGAAGTTCTGAAAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GATCAGCCATCAGCGTGGCATGAGGAAGACCTAGGAACAGACAGACTGGGGAGAAGACACAGAGCCAAGCAGGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCTGGCCTGCAGCCCAAACCCTGTGGAATCCCTACATTCAAGGACCAGGTTGAAGTGAAGCCATTGACAGGAAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGAGATGCAGTAGTGTTCTGGAAGTCAAGTGAGGAGGAGGATTGAAGAAGAGGTTGGTCAAAATTCTGGGGGTT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCCCAGTGGAAACACCAGACTGCAAAGCTTTGAGAAGTCTGTATGAGATGAACAACTGGAAAAGGTTCTTCGTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGAATTTGTGTGGTGAAGAGCTGGAATAGCGGCTTGAGGGAGAGAAGCCAGATGGAGTCTCACTCTGTCGCCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGGCTGGAGTACAGTGGTGTGATCCGGGCTGACTGCAAGCTCTGCCTCCCGAGTTCACACCATTCTCCTGCCTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGTCTCCCGAATAGCTGGGACTACAGGCTCCCACCACCACACCCGGCTAATTTTTTGTACGTTTTTTTTTTTTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGTAGAGACAGAGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACATTGTGATCCACCCGCCTTGGTC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TCACAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCATGTTGATTTGTTTTAATGGTAGTTGCAAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACTTGTGAGAGTGACATCCACCTGGATGCTGACTTGAATGGAATTTCATAACTGTTGGGTACTGACCATGAGTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GGTGTGGGGACATACAAAGTTGAACAAGACATAGGCTTGCCTCATAGTGTCTACAGCCTGGAAGAGGGAAGAAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GTGACAACACAAATAGTTCTGCATCTTATGAATTCATGGGAAGAGGAGAGGTGTCATAAGACAGAAAACCAGAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GTTTTGGCAACCGTATGCTGATTCTGCCATCTCCAGCCTGATTCCTTGGGAGAGGTTAACCTTCCACAGTGGTG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCAAAAGTCAGCAGGCAATGAAGGCTATTTCCACCTGAGTCACCAGAAAGAATGGCTAGGTCATAAGCCACATG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GCTGGACTCTATCTACCTCCCTGTAATCTCCACTCTTTCACCTGTGCCAGCAATGGTTTAGAGATGAACAGACC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATAAAGACTATGGAAATCCAATAATCTTTAATGCATTTGCTCTGTCAGTGACATTTGCCATAGGAGAGAGAGAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ATTTGGAATTTATAATTTGTACACCCTGATTCTGCACAGCCTTAGTCTCTGACAATGTGTGAATGCATATTTGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AAGGGACACATTCTCCCAGTTTACTGCAATATCCTCGCTCCCTATTAATTACACCCAGTGATTAAGCCCACAAT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GCCTTTTAAATTTTCCCAGCAAGCCTTGTACAACAATCCAAATCAGGCCAAAAGTAGGAGGAGAGCTATTTTCT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TCCTGCCTGCTTTCCCTCTGAGCATACAAATTTGGAGGCCCCATAACAACTGCTCCCCTCTTCATGCTGGCAGA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GCCTAATTATTTCTCAACTTATCCCTAAACAAAGAATAGATCACCAAAATACTTCAGATGAAACGTAGAGCAGA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CAGGTCCTGGGCTGGGAATCCAGGAGACTGATGCAACAAATGCAACAAAGAGCATTAAGAGACTAGCAATGTCC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ATGAAGAAGGGAACCTAATAAGTAAGCTGCCACAGCTCAAGTCCTCCTGGCCAAAGCCAGGTCATGTCCCTCTA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TAACCAGCCAGTGAGAAGGGAATGAGGTCCCTAAACGGGTTCGGGGGATTCATGATTCTCTCTGGGGACTGGAG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGAGAGCCTGGAGGTCTCACTTTCTTGAGCACATCGGGGTGACTGATGGACCCTGCCGGGTGGTCAAGGTGAGA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TGGCTTCTGGCACAGGTATTGGATGTGACATAATCCTTGCGAAGGGCCTAGACAGTTAAGGAAGTGCACCCTAC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CTCCTGAAAGCTCCCTCCATACCTGGCACTAAAAGGTATTATCACCAGTTCAGATATTTTGATATATATGGTTC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GCTTCTGTCTGATGACTCCCTGCAAAAAGGCTACCCTCCAAGCTACCCTCTAGGGTGAGTCATTAGACAGAACA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AGGATATAACACATCCCCTGCTCTCCTAAGGAAATTCTCTCAGTGTGAATTTTCTTGTGCTGAATGAACAAAGA 2664
Query 1 ------------------------ATGG-------------AGTCTCATTCTGTCGCCCAGACTGGAGTGAAGT 37
.||| |||||||.||||||.|||||.||||||||.|||
Sbjct 2665 TTTTTTTTTGTTTGTTTGTTTTTTTTGGTTTGTTTTTAGACAGTCTCAGTCTGTCACCCAGGCTGGAGTGCAGT 2738
Query 38 GGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGC 111
||||.|||||.||||.||||||||||||||||||.|.|.|||||.||||||..||||||.||||||.|||||||
Sbjct 2739 GGCACGATCTTGGCTTACTGCAACCTCTGCCTCTGGGGTTCAAGTGATTCTTGTGCCTCAGCCTCCCGAGTAGC 2812
Query 112 TGGGATTACAGGCACACGCAACCATGCCCGGCTAA-----TTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCA 180
|||||||||||||||..||.||||.||||.||||| ||||||||||||||||.|||||||||||||||..
Sbjct 2813 TGGGATTACAGGCACCTGCCACCACGCCCAGCTAATTTTTTTTTTTTTGTATTTTTTGTAGAGATGGGGTTTTG 2886
Query 181 CCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG----------------------------------- 219
|||||||||.|||||||||||.||||.||||||||||||
Sbjct 2887 CCATGTTGGTCAGGCTGGTCTTGAACCCCTGACCTCAAGTGATCCTCCCGCCTTGGCCTCCCAGAGTGCTGGGA 2960
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2961 TTACAGACATGAGCCACTGCGCCTGGCCTCAATGAGTAAATGTTTTGCTAAAAAATTTCCCACACTGCCTCAGC 3034
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3035 ATAAAGCCTTACTTCAGTGTCAACTTTTGGTGCTGAACAAGGCACTCCTTGGCTGAAACCTTCCCACATTCTAT 3108
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3109 GCATTCATAAGGCTTTTGCAGGGTGAACTTTCTGGTGCTGAGCAAGGTTAGAGGGACAGCCAAAGGCTCTCTCA 3182
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3183 CATTGTCCCCACTCATAAAACCTTTCTGTGTTGTGAACTTTCTGGTGCCCTGCAAGGTGGACATTTCTGCTGTA 3256
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3257 GGATTTCCCACACCTGCTGTACACATAAGGGCTTGCTCCAGAGTGAAGTCTCTGGTGGTGAACAAGGCTGGAGC 3330
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3331 TCTGGCTAAAGGATTTCCCACATTCTTTGCACTCATAAGGACTTTCTCCAATATGGGTTCTTTGATGTTGACCA 3404
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3405 AGTCCATATTTGGAGCTCAAAGATTTCTTACGCAATGTAAATTAGTATAACCACTATGGAGAACAGTTTGGAGG 3478
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3479 TTCCTCAAAAAACTAAAAATAGAGCTACCATATGACCCATCAATCTGACTTCTAGTTATATACCCCAAAGAAAA 3552
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3553 GAAATCAGTACATTGAAGAGATATCTGCCCTCCCATCTTTGTTGCAGCACTATTCACAATAGCCAAGATTTGGA 3626
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3627 AGTAACCCAAATGTCCATCAACAGACAAATGGATAAAGAAAATGTGGTGCATATACACAATGGAGTAGTATTCA 3700
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3701 GCCATAAAAAAGAATGAGATCTTGTCATCTGCAACAACATGGATGGAACTGGAGGTCCTTAAGGTTAAGCAAAA 3774
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3775 TAATCCAGGCACAGAAAGAAAACATTGCATGTTCTCATCTATTTGTGAGAACTAAAAATTAAAACAATTGAACT 3848
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3849 CATGGAGATAGAGAGTAGAAGGATGGTTACCAGAGGCTGGGAAGGGTAGTGAGGGCGAGTGAGGGGGAAGTGGG 3922
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3923 GTGTTTAATGTGTCCAAAAAATGGTCAGAAACAATGAATAAAGTCTAATATATGACAGCAAAAGAGTGTGACTA 3996
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3997 TAGTCAATAATAATCGAATGGTACATTTAAAAATAACTAAAAGTGTATATTTGGATTGTTTGTAACATAAAGGA 4070
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4071 TAAATGCTTGAGGTGATGGATACCCCATTTACCCTGATGTGATTGTTACACATTGTATGCCTGTATCAAAGTAT 4144
Query 220 ------------------------------------------------------------ 219
Sbjct 4145 CCATATACCCCATGAATAAATGTATATACCTACTATGCACCTACAAAAATTAAAATAATA 4204
