Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12786
Subject:
NM_173537.4
Aligned Length:
2878
Identities:
1421
Gaps:
1415

Alignment

Query    1  ATGGCCCAGGTAGCAGTGTCCACCCTGCCTGTTGAAGAAGAGTCCTCCTCAGAGACCAGGATGGTGGTGACATT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCCCAGGTAGCAGTGTCCACCCTGCCTGTTGAAGAAGAGTCCTCCTCAGAGACCAGGATGGTGGTGACATT  74

Query   75  CCTCGTGTCTGCCCTCGAATCCATGTGTAAAGAACTGGCCAAGTCCAAGGCAGAAGTGGCCTGCATCGCAGTGT  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CCTCGTGTCTGCCCTCGAATCCATGTGTAAAGAACTGGCCAAGTCCAAGGCAGAAGTGGCCTGCATCGCAGTGT  148

Query  149  ACGAAACAGACGTGTTTGTCGTCGGAACCGAGAGAGGATGCGCTTTTGTTAATGCCAGGACGGATTTTCAGAAA  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ACGAAACAGACGTGTTTGTCGTCGGAACCGAGAGAGGATGCGCTTTTGTTAATGCCAGGACGGATTTTCAGAAA  222

Query  223  GATTTTGCAAAATACTGCGTTGCAGAGGGACTGTGTGAGGTGAAACCTCCCTGCCCTGTGAACGGGATGCAGGT  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GATTTTGCAAAATACTGCGTTGCAGAGGGACTGTGTGAGGTGAAACCTCCCTGCCCTGTGAACGGGATGCAGGT  296

Query  297  CCACTCGGGCGAAACGGAAATACTCAGGAAGGCAGTGGAGGACTATTTCTGCTTTTGTTATGGTAAAGCCTTAG  370
            ||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CCACTCAGGCGAAACGGAAATACTCAGGAAGGCAGTGGAGGACTATTTCTGCTTTTGTTATGGTAAAGCCTTAG  370

Query  371  GGACAACAGTGATGGTGCCTGTTCCCTATGAGAAGATGCTGCGAGACCAGTCGGCTGTGGTAGTGCAGGGGCTT  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GGACAACAGTGATGGTGCCTGTTCCCTATGAGAAGATGCTGCGAGACCAGTCGGCTGTGGTAGTGCAGGGGCTT  444

Query  445  CCGGAAGGCGTTGCCTTTCAACACCCTGAGAATTACGACCTTGCAACCCTGAAATGGATTTTGGAGAACAAAGC  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CCGGAAGGCGTTGCCTTTCAACACCCTGAGAATTACGACCTTGCAACCCTGAAATGGATTTTGGAGAACAAAGC  518

Query  519  AGGGATTTCATTCATCATAAATAGACCCTTCCTAGGACCAGAGAGTCAGCTGGGTGGCCCTGGGATGGTAACAG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AGGGATTTCATTCATCATAAATAGACCCTTCCTAGGACCAGAGAGTCAGCTGGGTGGCCCTGGGATGGTAACAG  592

Query  593  ATGCGGAGAGATCCATAGTATCACCAAGTGAAAGCTGCGGCCCCATCAATGTGAAAACTGAACCCATGGAAGAT  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ATGCGGAGAGATCCATAGTATCACCAAGTGAAAGCTGCGGCCCCATCAATGTGAAAACTGAACCCATGGAAGAT  666

Query  667  TCTGGCATTTCACTGAAAGCAGAAGCTGTCTCAGTCAAGAAAGAATCAGAAGATCCTAATTACTATCAATATAA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TCTGGCATTTCACTGAAAGCAGAAGCTGTCTCAGTCAAGAAAGAATCAGAAGATCCTAATTACTATCAATATAA  740

Query  741  TATGCAAGGAAGCCACCCTTCTTCCACAAGCAATGAAGTAATAGAAATGGAATTACCAATGGAAGATTCCACTC  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TATGCAAGGAAGCCACCCTTCTTCCACAAGCAATGAAGTAATAGAAATGGAATTACCAATGGAAGATTCCACTC  814

Query  815  CGCTGGTCCCTTCAGAAGAACCAAATGAGGACCCTGAAGCCGAGGTGAAAATCGAAGGAAACACAAATTCATCC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CGCTGGTCCCTTCAGAAGAACCAAATGAGGACCCTGAAGCCGAGGTGAAAATCGAAGGAAACACAAATTCATCC  888

Query  889  AGTGTTACAAATTCTGCAGCAGGTGTTGAAGATCTTAACATCGTTCAAGTGACTGTTCCAGATAATGAGAAGGA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AGTGTTACAAATTCTGCAGCAGGTGTTGAAGATCTTAACATCGTTCAAGTGACTGTTCCAGATAATGAGAAGGA  962

Query  963  AAGATTATCAAGCATTGAAAAGATTAAACAGCTAAGAGAACAAGTTAATGACCTCTTTAGCCGAAAATTTGGTG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AAGATTATCAAGCATTGAAAAGATTAAACAGCTAAGAGAACAAGTTAATGACCTCTTTAGCCGAAAATTTGGTG  1036

Query 1037  AAGCAATTGGCGTGGATTTCCCTGTGAAAGTTCCCTACAGGAAGATCACATTCAACCCTGGCTGTGTGGTGATT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AAGCAATTGGCGTGGATTTCCCTGTGAAAGTTCCCTACAGGAAGATCACATTCAACCCTGGCTGTGTGGTGATT  1110

Query 1111  GATGGCATGCCCCCGGGGGTGGTATTCAAGGCCCCCGGCTATCTGGAAATCAGTTCCATGAGGAGGATCTTGGA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GATGGCATGCCCCCGGGGGTGGTATTCAAGGCCCCCGGCTATCTGGAAATCAGTTCCATGAGGAGGATCTTGGA  1184

Query 1185  GGCAGCTGAGTTTATCAAATTCACAGTCATCAGGCCGCTTCCAGGGCTTGAGCTCAGTAATGGACTTTTGGAGG  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |.|||..
Sbjct 1185  GGCAGCTGAGTTTATCAAATTCACAGTCATCAGGCCGCTTCCAGGGCTTGAGCTCAGTAATG-----TGGGAAA  1253

Query 1259  CCG-------GGGCAGGAGGATTGCTTGAGGCCGGGAGTTTGA---------GGCCAG------------CCTG  1304
            .||       |..||||||          |||||.|.||||.|         ||..||            |.||
Sbjct 1254  ACGCAAGATAGACCAGGAG----------GGCCGTGTGTTTCAAGAAAAGTGGGAGAGAGCGTATTTCTTCGTG  1317

Query 1305  G--------------GCAACATGGC-------------AAGACCCCATCTC----TACAAAAAATTTAA---AA  1344
            |              .|||||||.|             |||    |||.||    |.||||.|||.|||   ||
Sbjct 1318  GAAGTACAGAATATTCCAACATGTCTCATATGCAAACAAAG----CATGTCTGTGTCCAAAGAATATAACCTAA  1387

Query 1345  ------------------------------ATT-----------------------------------------  1347
                                          |||                                         
Sbjct 1388  GACGCCACTATCAAACCAATCACAGCAAGCATTATGACCAGTATATGGAAAGAATGCGTGACGAGAAGCTTCAC  1461

Query 1348  -AGCTGGAAACAGTGGCTC-------------------------ACACC---TGTAGCCCCAGC---------T  1383
             |||||.|||.|| |||||                         |||||   |||  |||.|||         |
Sbjct 1462  GAGCTGAAAAAAG-GGCTCAGGAAGTATCTCTTAGGCTCATCAGACACCGAGTGT--CCCGAGCAAAAACAAGT  1532

Query 1384  ACTTG-------------------------------GCAGGCTGAAGCGGGAGGA--TCGCT-TGAACTCA--G  1421
            ..|||                               ||||.|||.|    |||||  |.||| .|||||.|  |
Sbjct 1533  GTTTGCAAACCCAAGTCCAACCCAGAAATCCCCCGTGCAGCCTGTA----GAGGACCTAGCTGGGAACTTATGG  1602

Query 1422  GAG------------------------TTTGAGACA---------GCA------GAGAAC-----CATAATTGC  1451
            |||                        ||||.|.||         |||      ||||.|     .||||.|  
Sbjct 1603  GAGAAGTTACGTGAAAAAATCAGGTCTTTTGTGGCATATTCTATCGCAATCGATGAGATCACGGATATAAAT--  1674

Query 1452  AATACTGCACTCCAG---------------CCTGG-------------------GTGACAGAACAA------GA  1485
            |||||  ||| ||||               |.|||                   |||.|.|||.||      ||
Sbjct 1675  AATAC--CAC-CCAGTTGGCCATATTCATCCGTGGTGTCGATGAGAATTTCGATGTGTCCGAAGAACTTCTGGA  1745

Query 1486  CCCTGTCTC-----------------------------------------------------------------  1494
            |.|.||..|                                                                 
Sbjct 1746  CACGGTGCCCATGACGGGTACAAAATCTGGCAACGAGATCTTTTCGCGTGTTGAGAAAAGCCTGAAAAACTTCT  1819

Query 1495  --------------------------------------------------------------------------  1494
                                                                                      
Sbjct 1820  GTATCGACTGGTCGAAATTAGTAAGCGTGGCCTCCACTGGCACCCCAGCGATGGTGGATGCCAATAACGGGCTT  1893

Query 1495  --------------------------------------------------------------------------  1494
                                                                                      
Sbjct 1894  GTCACAAAACTGAAGTCCAGGGTGGCGACGTTCTGCAAGGGTGCGGAACTGAAGTCCATCTGTTGTATAATTCA  1967

Query 1495  --------------------------------------------------------------------------  1494
                                                                                      
Sbjct 1968  TCCGGAATCACTCTGTGCTCAGAAGTTGAAGATGGACCACGTCATGGACGTGGTAGTGAAGTCCGTGAACTGGA  2041

Query 1495  --------------------------------------------------------------------------  1494
                                                                                      
Sbjct 2042  TATGCTCCCGGGGACTGAACCACAGTGAGTTCACAACCTTGCTCTATGAGCTGGACAGCCAGTATGGTAGCCTC  2115

Query 1495  --------------------------------------------------------------------------  1494
                                                                                      
Sbjct 2116  CTGTACTACACGGAGATTAAGTGGCTCAGTCGCGGGCTCGTGCTAAAGAGATTTTTCGAATCCTTGGAAGAAAT  2189

Query 1495  --------------------------------------------------------------------------  1494
                                                                                      
Sbjct 2190  CGACTCCTTCATGTCATCCAGAGGGAAACCCCTGCCTCAACTGAGCTCCATAGATTGGATCCGAGACCTGGCCT  2263

Query 1495  --------------------------------------------------------------------------  1494
                                                                                      
Sbjct 2264  TCTTGGTTGACATGACGATGCATCTGAACGCTTTGAACATCTCTCTCCAAGGACACTCCCAAATCGTCACGCAG  2337

Query 1495  --------------------------------------------------------------------------  1494
                                                                                      
Sbjct 2338  ATGTATGACCTGATCCGGGCGTTCCTAGCAAAACTGTGCCTCTGGGAGACTCATTTGACGAGGAATAATCTGGC  2411

Query 1495  --------------------------------------------------------------------------  1494
                                                                                      
Sbjct 2412  CCACTTTCCCACCCTGAAATTGGCTTCCAGAAATGAAAGCGATGGCCTGAACTACATTCCCAAAATCGCGGAAC  2485

Query 1495  --------------------------------------------------------------------------  1494
                                                                                      
Sbjct 2486  TCCAGACCGAATTCCAGAAAAGGCTGTCTGATTTCAAACTCTACGAAAGCGAACTGACTCTGTTCAGCTCCCCG  2559

Query 1495  --------------------------------------------------------------------------  1494
                                                                                      
Sbjct 2560  TTCTCCACGAAGATCGACAGTGTGCACGAGGAGCTCCAGATGGAGGTTATCGACCTGCAATGCAACACGGTCCT  2633

Query 1495  --------------------------------------------------------------------------  1494
                                                                                      
Sbjct 2634  GAAGACGAAATACGACAAGGTGGGAATACCAGAATTCTACAAGTACCTCTGGGGTAGCTACCCGAAATACAAGC  2707

Query 1495  --------------------------------------------------------------------------  1494
                                                                                      
Sbjct 2708  ACCATTGCGCAAAGATTCTTTCCATGTTCGGGAGCACCTACATCTGCGAACAGCTGTTCTCCATTATGAAACTG  2781

Query 1495  ------------------------------------------------------------------  1494
                                                                              
Sbjct 2782  AGCAAAACAAAATACTGCTCCCAGTTAAAGGATTCCCAGTGGGATTCTGTACTCCACATCGCAACG  2847

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