Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12840
- Subject:
- NR_149156.2
- Aligned Length:
- 4376
- Identities:
- 709
- Gaps:
- 3666
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGACCTGCAGAGTGAAGAAAGCTGGTAATAGATGTCTGACAAACTAAAGAAAGACTTGTGTTACGATCAGAACA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TAATACCTGAAAATTTGCCAGCACCAACAGACAAATGTAAACTAAAATATCAGCAATGTAAAACTGAAATTAAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAGGGCTATAAGCAGTATAGTCAGAGAAATGCAGAAAATACAAAATCAAATGTTACACATAAACAGTCTCCAAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAACAAGATAGATGAAAAGTGTGTGCAAGATGAAGAAGCCAACACAGATGACCTTACGACTCTGGATAGGAAAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCATCTTACAGCAAGGTTATGCAGACAACTCTTGCGATAAACAACAGAGGGCAAGAAAATTGGATGCAGAAATT 370
Query 1 ------------------------------------------ATGATAGACCACTTATCTAGGGCTGTCATCAG 32
||||||||||||||||||||||||||||||||
Sbjct 371 GTGGCTGCAGAGAAGAAGAAACAGATTGTTGCAGAGCAAGTGATGATAGACCACTTATCTAGGGCTGTCATCAG 444
Query 33 TGATCCAGAGCAAAATTTAGCCATTGAGCAAAAAGAAAGTGATCATATCCTTCCAGATTCAAAGATGACACCTC 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGATCCAGAGCAAAATTTAGCCATTGAGCAAAAAGAAAGTGATCATATCCTTCCAGATTCAAAGATGACACCTC 518
Query 107 TTCGATTTAGAAAAAGAACACTACATGAAACAAAGATAAGAACTCATTCTACATTAACTGAAAATGTGCTTTCT 180
||||||||||||||||||||||||||||||||||
Sbjct 519 TTCGATTTAGAAAAAGAACACTACATGAAACAAA---------------------------------------- 552
Query 181 CATAAATTACAGTTTGATGGTAGGATCGTATCACGAACAAATGTGCTTCCTTTTATTCAAAAAAGCATTTATAG 254
Sbjct 553 -------------------------------------------------------------------------- 552
Query 255 TCATCAGTGTGGACGAAGAAAAGGAAAACAATACCGACTTGGTGATTTTTATGTTGGTGCAACCTTGACATTTT 328
|||||||||||||||||||
Sbjct 553 -------------------------------------------------------GGTGCAACCTTGACATTTT 571
Query 329 TGAGTTCTGATCATCTCAGCCTTCCAGAAAGCATCAAAGAAAACACATTACTTAAACTCCGAATCACAAATATT 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TGAGTTCTGATCATCTCAGCCTTCCAGAAAGCATCAAAGAAAACACATTACTTAAACTCCGAATCACAAATATT 645
Query 403 GATCAAATAGCTTTGGATTCTCTCAAAACTGCTTCTATGGAACAGGAGGATGATATAATCATTCAAGAAACCAA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 GATCAAATAGCTTTGGATTCTCTCAAAACTGCTTCTATGGAACAGGAGGATGATATAATCATTCAAGAAACCAA 719
Query 477 TGATAGGCTGGTCTTCAAAGCAATTCAAGATGTGCTAAAAGAAAAACTACATAAAAGAGGTGTTCGTATTTTGA 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGATAGGCTGGTCTTCAAAGCAATTCAAGATGTGCTAAAAGAAAAACTACATAAAAGAGGTGTTCGTATTTTGA 793
Query 551 CTGGATTGGGAAAATATTTTCAACAGTTGGACAAGGAAGGAAATGGACTTTTAGATAAGGCAGATTTTAAGCAA 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 CTGGATTGGGAAAATATTTTCAACAGTTGGACAAGGAAGGAAATGGACTTTTAGATAAGGCAGATTTTAAGCAA 867
Query 625 GCTCTAAAAGTGTTTCACTTAGAAGTGTCTGAAAAGGATTTTGAGTCTGCATGGCTAATTCTGAATGACAATGG 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 GCTCTAAAAGTGTTTCACTTAGAAGTGTCTGAAAAGGATTTTGAGTCTGCATGGCTAATTCTGAATGACAATGG 941
Query 699 CAATGGCAAGGTTGATTATGGAGAATTCAAACGTGGTATTATTGGTGAAATGAATGAATACAGGAAATCATATG 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 CAATGGCAAGGTTGATTATGGAGAATTCAAACGTGGTATTATTGGTGAAATGAATGAATACAGGAAATCATATG 1015
Query 773 TTCGAAAGGCCTTTATGAAACTGGATTTCAACAAAAGTGGCAGTGTGCCTATTATAAACATAAGAAAATGTTAC 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TTCGAAAGGCCTTTATGAAACTGGATTTCAACAAAAGTGGCAGTGTGCCTATTATAAACATAAGAAAATGTTAC 1089
Query 847 TGTGCAAAGAAGCATTCTCAAGTAATTTCAGGT----------------------------------------- 879
||||||||||||||||||||||||||||||||.
Sbjct 1090 TGTGCAAAGAAGCATTCTCAAGTAATTTCAGGCCATTCAACAGAGGAAGAAATCAAATCATCCTTTCTAGAAAC 1163
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1164 ATTAAAAGTTGCCTGCAGCAAGTCTGATGAAGTGTCATATGGTGAATTTGAAGATTACTATGAAGGTTTAAGTA 1237
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1238 TAGGAATAGTAGATGATGAAGACTTTGTTAACATCTTACGTACTCCATGGGGGATTTAGTCTTTAATAATACAT 1311
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1312 ATGTCATCAACACTAAGCATTTTATTGGAGAGATGATATCAATGTAAAGGATGATCAAACACTGGAATATATTT 1385
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1386 TCCTAGGACTTCCTTTATTCTGGTTTCTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTCTCAAAAATGTTGAATT 1459
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1460 TGGAAAGAGAACTATCCAGAAAGATAGATGTAGGGGTGTGTTAGTGTTTGTGCATGTGTATGCCTGTTCACATG 1533
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1534 TCCTTACATTTGTAAAGATATCTTTTTGGTTTATTACTTATCTTGCGTATATTTTAGAGGTCATTTTTTATTAA 1607
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1608 CTTCAGTAGGAAAGTTACATCTGCATCAAACAATATGGCAACATCTATTTATTAACCAAGTTTCCTGTCCTTTC 1681
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1682 ACATTGTTTTTTGCTACCTCTTCCTCAGAATATATTTGCCACCATGGTCAATTTGATAAATTAGAATTGGGCCC 1755
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1756 AAAGCCAGTGAGATAATTCAATGTGTTTTTAACACATGAAAATATTAAAGGATATGCAAGAGAAATTTTTCAAG 1829
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1830 CAGTGTGATTATAGATGTTTTCTGTATATAGAATATTTCAAATGATGGAGGTTTACCCCATGATGCTCATTTAA 1903
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1904 ATACTGACTTGTCTTTTAAATCTGTCTTCTAAATTATGTACTGTTGTTGGTTAAATAGAGCACAATGTAGTTAT 1977
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1978 TCTAATGCCCAGTTGTATTTGTTCTTTTATTCTGCTTTTTAACTGTAATCCTTTTTACCAGCATACGATTGTTA 2051
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2052 TTGAGCAATATGAAAGGGAAATGTTCTTTATTAAAATCAATACATTATCTTATTAAACAAAGATCCTAAAAGTA 2125
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2126 TATTGTTGCATATATGAATCCAAGGAATAGTTCAGTAATTATTGCCTAAAATGTGAAAGCATATTTTGTATCCT 2199
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2200 AAAATGAATGTATGATATTCTAAACATCTGTTTTAGTATAACAAACAATTGAAACATTTCCTTCTAAATATATG 2273
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2274 TTATTTAATAGTTACATGTATTATAATCATTCTTTCTAAATTCTTTGCTAGTCATTTCTTCCTGGGAATACAGA 2347
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2348 GAAAAGAGACAACTTTATGAGTTGTTTTCAACTTCATAATTTTAAATTTTCTATGTTAATATAACATAAATTAG 2421
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2422 AAAAAATAAGTGATTCAAAATGAAAATATTTACTTTGTAGAATATGACTTTAGACATATCACTGTATCCATCTA 2495
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2496 TACTTGGCAGCAACATGAGAAGTGTGATACATGTGAACCCAACAAATTCAAAGTTGCACTTTTCAAGATGTGAG 2569
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2570 AAGGTACTAAAACTTAATACTAAAACATGAGAGGGAAAATATGTGTAAACCTCTAGTGCTATTTTCACTGGCTA 2643
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2644 AATTCTTTATTTCTTGATTTTTTTAAAAATTAGGTTATTAAAATTAAAACAATATGCTAGAAGACATTTTGGCA 2717
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2718 GAAATAAGTCTATAACACTATTTTTGTCACATATCTTTTTCTTGGAAAAATTTATCCAACTATAGACATCTTAA 2791
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2792 ACCCTACAAATTGTTCTTGTTAAAAATGACTAATACTGGGGGTGCTCAATATGCATATAGTGTTTTTCATTGAT 2865
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2866 AATTTTTATTTAGTTCTTAAGAAACCTGTTCTTAATGTTGGCATGTCACATTTTTCTGTTACTATAATCAGAAA 2939
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2940 ATGTATAGTCTGTTATACTGTAAAAAAAAAAAAAAAGGGAAGCTACTTTTGGAATGTAACGTGTTAACATGACA 3013
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3014 GCATACTCTTAGTATTAATCTTAATCTTCCTAACATAAGCATTCACATGTGGTTATTTGTAGGAAATAGCTCTA 3087
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3088 TTTATGAGATTTTTTTTGGTGTATTTTGTTAGAATTGGTGACACAGTAAATCATTCTGCTTTTGGATTTGCCTG 3161
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3162 ACTGCCTGCATTCTTCTTTGATTTTGGTATAGTAAAATCTGTTATTTAGTGTTAAACTTAATAAAAGAGCATTT 3235
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3236 AAGAGAAGTGACATTTCAAACATCCACAACACAACTGACTTTTGAAATCCTATGCTTAATAGTCTTTGTAATTC 3309
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3310 TAAAAGACCTTTTGAAAATGTTAAAATATTAAATTATATGTTGTAATGCTGTTACATGAATTTTATAGTTATGT 3383
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3384 ATATTTTATAGATCTCTATGTCTTTGTAAGTTACTTGCTTGTATGCTATATAATTGCTTTCTCAGTTAACCATA 3457
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3458 CTGTTTATGGAATTGTATATACTGATTTTTCTGTTTTTATATTTTAAAAATAAAAGTTGAGAATTTTAAGGAAA 3531
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3532 AACATTTTATTAAAAAGACAAGGTATATTATATAGGAATTTTAAGCTAACTTTTAATGGAAAGGACATACATAT 3605
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3606 TTGCATGATGGAGCAATCACATTATAGTTAAACATGTATGTCCCTGTTTTAAATTTTATAGTATATAAATATAT 3679
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3680 GTGCTAATGAACCAGCGACTCTGCATAGAGGCAGTCACTTAGAGTAATTAATAATCTTGATACAGCTGTAGATC 3753
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3754 ATATCTTATTTTACATATTACTTTTGACTTCCAGTTTAAGTTGTTTGTTATCAAGTATTTCAGGAGAGAATTGT 3827
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3828 GTACATTAGGCTATGTTTACTGCAGATTATGTAACATGCTTTTATGAGATTATAGTTTGTAGTGCTTGCAAATA 3901
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3902 TAAAACATGTACCCTGATAAACTATAATCACTACTAGGTTGACCAGCAAGGACAAACATGAAAATGCTTAAAAA 3975
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3976 AAAGAAAGCGCTTAAAACAAAGAAATAGAAGGTAATGGGCATATATAAAATAAGCCAAGCAAGAGAAGAGCAAA 4049
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4050 GACAATCTGCAGGGTGGACATGGATGTATTCGTTTCTGATCATGAGAAGAGGCTCTTGTCATACATATCGTTCC 4123
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4124 ATTTTTATTTTAAAGTTCTATAAACTTCTGAGGTAAACTGATTTCTTGGATGTACTTAATAAAGAATAAATGTT 4197
Query 880 ---------- 879
Sbjct 4198 TCATATTGGA 4207
